Browsing Mutation Sites on Lineage AA.1


Overview of the global distribution of genome sequences on lineage AA.1.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage AA.1.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage AA.1.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 AA.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V2965 AA.1 1.31e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 17750 17486C>T missense_variant A5829V Ala5829Val
V2967 AA.1 1.54e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 17762 17498C>T missense_variant A5833V Ala5833Val
V3009 AA.1 2.00e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18115 17851C>T missense_variant H5951Y His5951Tyr
V531 AA.1 2.31e-2 GU280_gp01_pp1a ORF1ab_pp1a 1820 1555G>A missense_variant G519S Gly519Ser
V3059 AA.1 2.15e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18394 18130G>T missense_variant A6044S Ala6044Ser
V2128 AA.1 9.54e-1 GU280_gp01_pp1a ORF1ab_pp1a 11132 10867G>T missense_variant A3623S Ala3623Ser
V3563 AA.1 1.54e-2 GU280_gp02 S 21707 145C>T missense_variant H49Y His49Tyr
V3748 AA.1 9.62e-1 GU280_gp02 S 22227 665C>T missense_variant A222V Ala222Val
V87 AA.1 2.00e-1 GU280_gp01_pp1a ORF1ab_pp1a 224 -42T>C upstream_gene_variant None None
V2176 AA.1 1.54e-2 GU280_gp01_pp1a ORF1ab_pp1a 11333 11068G>T missense_variant V3690L Val3690Leu
V677 AA.1 2.00e-1 GU280_gp01_pp1a ORF1ab_pp1a 2306 2041C>T missense_variant L681F Leu681Phe
V3969 AA.1 1.00e+0 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V2188 AA.1 9.54e-1 GU280_gp01_pp1a ORF1ab_pp1a 11417 11152G>T missense_variant V3718F Val3718Phe
V4006 AA.1 2.15e-1 GU280_gp02 S 23577 2015C>T missense_variant A672V Ala672Val
V4015 AA.1 6.38e-1 GU280_gp02 S 23593 2031G>T missense_variant Q677H Gln677His
V4034 AA.1 1.08e-1 GU280_gp02 S 23625 2063C>T missense_variant A688V Ala688Val
V4039 AA.1 2.31e-2 GU280_gp02 S 23634 2072C>T missense_variant S691F Ser691Phe
V4118 AA.1 6.15e-2 GU280_gp02 S 24198 2636C>T missense_variant A879V Ala879Val
V97 AA.1 9.54e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4119 AA.1 3.85e-2 GU280_gp02 S 24210 2648C>T missense_variant T883I Thr883Ile
V4203 AA.1 2.31e-2 GU280_gp02 S 24933 3371G>T missense_variant G1124V Gly1124Val
V4367 AA.1 2.31e-2 GU280_gp03 ORF3a 25513 121C>T missense_variant L41F Leu41Phe
V4380 AA.1 6.92e-2 GU280_gp03 ORF3a 25523 131G>A missense_variant G44E Gly44Glu
V2254 AA.1 2.00e-1 GU280_gp01_pp1a ORF1ab_pp1a 11851 11586G>T missense_variant M3862I Met3862Ile
V4641 AA.1 1.54e-2 GU280_gp03 ORF3a 26177 785C>T missense_variant P262L Pro262Leu
V5096 AA.1 9.23e-2 GU280_gp09 ORF8 27972 79C>T stop_gained Q27* Gln27*
V5505 AA.1 9.92e-1 GU280_gp10 N 28932 659C>T missense_variant A220V Ala220Val
V5596 AA.1 5.38e-2 GU280_gp10 N 29358 1085C>T missense_variant T362I Thr362Ile
V5713 AA.1 9.08e-1 GU280_gp11 ORF10 29645 88G>T missense_variant V30L Val30Leu
V5714 AA.1 1.23e-1 GU280_gp11 ORF10 29648 91G>C missense_variant D31H Asp31His
V864 AA.1 2.15e-1 GU280_gp01_pp1a ORF1ab_pp1a 3177 2912C>T missense_variant P971L Pro971Leu
V123 AA.1 5.38e-2 GU280_gp01_pp1a ORF1ab_pp1a 335 70C>T missense_variant R24C Arg24Cys
V1004 AA.1 1.54e-2 GU280_gp01_pp1a ORF1ab_pp1a 3692 3427G>T missense_variant V1143F Val1143Phe
V1260 AA.1 1.54e-2 GU280_gp01_pp1a ORF1ab_pp1a 5178 4913C>T missense_variant T1638I Thr1638Ile
V1277 AA.1 5.38e-2 GU280_gp01_pp1a ORF1ab_pp1a 5301 5036C>T missense_variant A1679V Ala1679Val
V1350 AA.1 1.54e-2 GU280_gp01_pp1a ORF1ab_pp1a 5835 5570C>T missense_variant S1857L Ser1857Leu
V1748 AA.1 2.31e-2 GU280_gp01_pp1a ORF1ab_pp1a 8240 7975C>T missense_variant H2659Y His2659Tyr
V5866 AA.1 9.85e-1 GU280_gp01_pp1a ORF1ab_pp1a 445 180T>C synonymous_variant V60V Val60Val
V5914 AA.1 1.23e-1 GU280_gp01_pp1a ORF1ab_pp1a 676 411C>T synonymous_variant G137G Gly137Gly
V6265 AA.1 9.92e-1 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6542 AA.1 9.77e-1 GU280_gp01_pp1a ORF1ab_pp1a 5170 4905C>T synonymous_variant Y1635Y Tyr1635Tyr
V6689 AA.1 9.69e-1 GU280_gp01_pp1a ORF1ab_pp1a 6286 6021C>T synonymous_variant T2007T Thr2007Thr
V7176 AA.1 9.08e-1 GU280_gp01_pp1a ORF1ab_pp1a 10078 9813C>T synonymous_variant F3271F Phe3271Phe
V7401 AA.1 2.15e-1 GU280_gp01_pp1a ORF1ab_pp1a 11956 11691C>T synonymous_variant D3897D Asp3897Asp
V8591 AA.1 9.92e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 21255 20991G>C synonymous_variant A6997A Ala6997Ala
V8671 AA.1 2.00e-1 GU280_gp02 S 21859 297C>T synonymous_variant N99N Asn99Asn
V8698 AA.1 1.00e+0 GU280_gp02 S 22051 489G>T synonymous_variant A163A Ala163Ala
V9322 AA.1 9.69e-1 GU280_gp05 M 26801 279C>G synonymous_variant L93L Leu93Leu
V6304 AA.1 6.46e-1 GU280_gp01_pp1a ORF1ab_pp1a 3373 3108C>T synonymous_variant D1036D Asp1036Asp
V6833 AA.1 8.46e-2 GU280_gp01_pp1a ORF1ab_pp1a 7420 7155C>T synonymous_variant I2385I Ile2385Ile
V7655 AA.1 3.62e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 13968 13704C>T synonymous_variant A4568A Ala4568Ala
V9727 AA.1 1.46e-1 GU280_gp10 N 29110 837A>T synonymous_variant P279P Pro279Pro
V8908 AA.1 5.38e-2 GU280_gp02 S 23689 2127T>C synonymous_variant N709N Asn709Asn
V6453 AA.1 4.62e-2 GU280_gp01_pp1a ORF1ab_pp1a 4540 4275C>T synonymous_variant Y1425Y Tyr1425Tyr
V7464 AA.1 2.31e-2 GU280_gp01_pp1a ORF1ab_pp1a 12400 12135C>T synonymous_variant L4045L Leu4045Leu
V7797 AA.1 2.31e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 14931 14667C>T synonymous_variant N4889N Asn4889Asn
V8369 AA.1 1.54e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 19263 18999C>T synonymous_variant N6333N Asn6333Asn
V9755 AA.1 1.54e-2 GU280_gp10 N 29218 945C>T synonymous_variant F315F Phe315Phe
V9058 AA.1 1.54e-2 GU280_gp02 S 24865 3303C>T synonymous_variant H1101H His1101His
V6591 AA.1 3.85e-2 GU280_gp01_pp1a ORF1ab_pp1a 5512 5247C>T synonymous_variant N1749N Asn1749Asn
V7368 AA.1 1.54e-2 GU280_gp01_pp1a ORF1ab_pp1a 11747 11482C>T synonymous_variant L3828L Leu3828Leu
V9304 AA.1 6.15e-2 GU280_gp05 M 26681 159C>T synonymous_variant F53F Phe53Phe
V9744 AA.1 4.62e-2 GU280_gp10 N 29179 906G>T synonymous_variant P302P Pro302Pro
V9087 AA.1 1.54e-2 GU280_gp02 S 25066 3504C>T synonymous_variant D1168D Asp1168Asp
V8270 AA.1 1.54e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18585 18321A>G synonymous_variant V6107V Val6107Val
V8272 AA.1 1.54e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18591 18327C>G synonymous_variant V6109V Val6109Val
V9523 AA.1 1.54e-2 GU280_gp09 ORF8 28001 108G>T synonymous_variant P36P Pro36Pro