Browsing Mutation Sites on Lineage AY.122.1


Overview of the global distribution of genome sequences on lineage AY.122.1.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage AY.122.1.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage AY.122.1.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2594 AY.122.1 1.08e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 14407 14143C>T missense_variant P4715S Pro4715Ser
V2595 AY.122.1 9.97e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V2694 AY.122.1 9.96e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15451 15187G>A missense_variant G5063S Gly5063Ser
V2762 AY.122.1 2.30e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16192 15928C>T missense_variant P5310S Pro5310Ser
V2789 AY.122.1 9.67e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 16466 16202C>T missense_variant P5401L Pro5401Leu
V2847 AY.122.1 1.08e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16975 16711G>T missense_variant V5571F Val5571Phe
V3126 AY.122.1 1.31e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18859 18595G>T missense_variant A6199S Ala6199Ser
V1982 AY.122.1 9.76e-1 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V3192 AY.122.1 8.91e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19220 18956C>T missense_variant A6319V Ala6319Val
V2116 AY.122.1 2.88e-2 GU280_gp01_pp1a ORF1ab_pp1a 11083 10818G>T missense_variant L3606F Leu3606Phe
V3326 AY.122.1 1.05e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 20274 20010G>T missense_variant M6670I Met6670Ile
V3362 AY.122.1 3.44e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 20438 20174G>T missense_variant S6725I Ser6725Ile
V616 AY.122.1 2.24e-2 GU280_gp01_pp1a ORF1ab_pp1a 2091 1826C>T missense_variant T609I Thr609Ile
V74 AY.122.1 9.64e-1 GU280_gp01_pp1a ORF1ab_pp1a 210 -56G>T upstream_gene_variant None None
V2137 AY.122.1 9.64e-1 GU280_gp01_pp1a ORF1ab_pp1a 11201 10936A>G missense_variant T3646A Thr3646Ala
V3533 AY.122.1 7.78e-1 GU280_gp02 S 21618 56C>G missense_variant T19R Thr19Arg
V641 AY.122.1 1.37e-2 GU280_gp01_pp1a ORF1ab_pp1a 2189 1924C>T missense_variant L642F Leu642Phe
V3635 AY.122.1 2.44e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3671 AY.122.1 7.38e-1 GU280_gp02 S 22028 467_472delAGTTCA disruptive_inframe_deletion E156_R158delinsG Glu156_Arg158delinsGly
V3672 AY.122.1 1.51e-2 GU280_gp02 S 22029 467A>G missense_variant E156G Glu156Gly
V3676 AY.122.1 2.18e-2 GU280_gp02 S 22034 472A>G missense_variant R158G Arg158Gly
V3886 AY.122.1 9.49e-1 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3900 AY.122.1 9.53e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3969 AY.122.1 9.98e-1 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V4023 AY.122.1 9.94e-1 GU280_gp02 S 23604 2042C>G missense_variant P681R Pro681Arg
V4076 AY.122.1 9.73e-1 GU280_gp02 S 23934 2372C>T missense_variant T791I Thr791Ile
V97 AY.122.1 9.73e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4143 AY.122.1 9.05e-1 GU280_gp02 S 24410 2848G>A missense_variant D950N Asp950Asn
V697 AY.122.1 2.53e-2 GU280_gp01_pp1a ORF1ab_pp1a 2445 2180C>T missense_variant T727I Thr727Ile
V4249 AY.122.1 1.54e-2 GU280_gp02 S 25169 3607C>T missense_variant L1203F Leu1203Phe
V4337 AY.122.1 9.95e-1 GU280_gp03 ORF3a 25469 77C>T missense_variant S26L Ser26Leu
V4371 AY.122.1 9.24e-1 GU280_gp03 ORF3a 25516 124C>T missense_variant P42S Pro42Ser
V4396 AY.122.1 1.12e-1 GU280_gp03 ORF3a 25549 157C>T missense_variant L53F Leu53Phe
V4438 AY.122.1 1.19e-2 GU280_gp03 ORF3a 25624 232C>T missense_variant H78Y His78Tyr
V4466 AY.122.1 1.72e-2 GU280_gp03 ORF3a 25690 298G>T missense_variant G100C Gly100Cys
V4483 AY.122.1 1.11e-2 GU280_gp03 ORF3a 25714 322C>T missense_variant L108F Leu108Phe
V2241 AY.122.1 1.75e-2 GU280_gp01_pp1a ORF1ab_pp1a 11750 11485C>T missense_variant L3829F Leu3829Phe
V4583 AY.122.1 2.85e-2 GU280_gp03 ORF3a 26031 639G>T missense_variant Q213H Gln213His
V4747 AY.122.1 1.63e-2 GU280_gp05 M 26727 205G>T missense_variant A69S Ala69Ser
V4760 AY.122.1 9.84e-1 GU280_gp05 M 26767 245T>C missense_variant I82T Ile82Thr
V4899 AY.122.1 1.22e-2 GU280_gp07 ORF7a 27526 133C>T missense_variant P45S Pro45Ser
V4900 AY.122.1 3.60e-1 GU280_gp07 ORF7a 27527 134C>T missense_variant P45L Pro45Leu
V4950 AY.122.1 1.92e-2 GU280_gp07 ORF7a 27635 242C>T missense_variant S81L Ser81Leu
V4952 AY.122.1 7.97e-1 GU280_gp07 ORF7a 27638 245T>C missense_variant V82A Val82Ala
V5000 AY.122.1 8.35e-1 GU280_gp07 ORF7a 27752 359C>T missense_variant T120I Thr120Ile
V5049 AY.122.1 9.71e-1 GU280_gp08 ORF7b 27874 119C>T missense_variant T40I Thr40Ile
V5131 AY.122.1 2.36e-2 GU280_gp09 ORF8 28048 155G>T missense_variant R52I Arg52Ile
V5134 AY.122.1 1.89e-2 GU280_gp09 ORF8 28054 161C>T missense_variant S54L Ser54Leu
V2303 AY.122.1 2.30e-2 GU280_gp01_pp1a ORF1ab_pp1a 12191 11926G>T missense_variant V3976F Val3976Phe
V5144 AY.122.1 1.05e-2 GU280_gp09 ORF8 28077 184G>T missense_variant V62L Val62Leu
V5150 AY.122.1 1.80e-2 GU280_gp09 ORF8 28085 192G>T missense_variant E64D Glu64Asp
V5217 AY.122.1 9.72e-1 GU280_gp09 ORF8 28247 355_360delGATTTC conservative_inframe_deletion D119_F120del Asp119_Phe120del
V5218 AY.122.1 3.38e-2 GU280_gp09 ORF8 28248 355G>A missense_variant D119N Asp119Asn
V5220 AY.122.1 2.77e-2 GU280_gp09 ORF8 28249 356A>T missense_variant D119V Asp119Val
V5229 AY.122.1 1.23e-1 GU280_gp09 ORF8 28253 360C>A missense_variant F120L Phe120Leu
V5237 AY.122.1 9.74e-1 GU280_gp10 N 28270 1delA frameshift_variant&start_lost M1fs Met1fs
V5241 AY.122.1 1.72e-2 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5341 AY.122.1 9.91e-1 GU280_gp10 N 28461 188A>G missense_variant D63G Asp63Gly
V5462 AY.122.1 9.88e-1 GU280_gp10 N 28881 608G>T missense_variant R203M Arg203Met
V5496 AY.122.1 9.85e-1 GU280_gp10 N 28916 643G>T missense_variant G215C Gly215Cys
V5499 AY.122.1 3.26e-2 GU280_gp10 N 28922 649G>T missense_variant A217S Ala217Ser
V5559 AY.122.1 1.02e-2 GU280_gp10 N 29171 898C>T missense_variant H300Y His300Tyr
V5614 AY.122.1 8.63e-1 GU280_gp10 N 29402 1129G>T missense_variant D377Y Asp377Tyr
V5708 AY.122.1 2.33e-2 GU280_gp11 ORF10 29628 71G>T missense_variant R24L Arg24Leu
V5777 AY.122.1 6.73e-1 GU280_gp02 S 29742 *4358G>T downstream_gene_variant None None
V5797 AY.122.1 2.39e-1 GU280_gp02 S 29759 *4375G>T downstream_gene_variant None None
V2018 AY.122.1 4.13e-2 GU280_gp01_pp1a ORF1ab_pp1a 10317 10052A>G missense_variant K3351R Lys3351Arg
V2021 AY.122.1 1.11e-2 GU280_gp01_pp1a ORF1ab_pp1a 10323 10058A>G missense_variant K3353R Lys3353Arg
V992 AY.122.1 6.43e-2 GU280_gp01_pp1a ORF1ab_pp1a 3638 3373G>T missense_variant G1125C Gly1125Cys
V1046 AY.122.1 1.05e-2 GU280_gp01_pp1a ORF1ab_pp1a 3875 3610G>A missense_variant A1204T Ala1204Thr
V1113 AY.122.1 9.90e-1 GU280_gp01_pp1a ORF1ab_pp1a 4181 3916G>T missense_variant A1306S Ala1306Ser
V1442 AY.122.1 9.86e-1 GU280_gp01_pp1a ORF1ab_pp1a 6402 6137C>T missense_variant P2046L Pro2046Leu
V1609 AY.122.1 7.36e-1 GU280_gp01_pp1a ORF1ab_pp1a 7124 6859C>T missense_variant P2287S Pro2287Ser
V1687 AY.122.1 1.72e-2 GU280_gp01_pp1a ORF1ab_pp1a 7869 7604C>T missense_variant S2535L Ser2535Leu
V1879 AY.122.1 9.88e-1 GU280_gp01_pp1a ORF1ab_pp1a 9053 8788G>T missense_variant V2930L Val2930Leu
V341 AY.122.1 9.87e-1 GU280_gp01_pp1a ORF1ab_pp1a 1048 783G>T missense_variant K261N Lys261Asn
V6265 AY.122.1 9.90e-1 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V7027 AY.122.1 9.90e-1 GU280_gp01_pp1a ORF1ab_pp1a 8986 8721C>T synonymous_variant D2907D Asp2907Asp
V7316 AY.122.1 9.71e-1 GU280_gp01_pp1a ORF1ab_pp1a 11332 11067A>G synonymous_variant V3689V Val3689Val
V8449 AY.122.1 9.49e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19983 19719C>T synonymous_variant V6573V Val6573Val
V8549 AY.122.1 9.63e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 20937 20673G>T synonymous_variant T6891T Thr6891Thr
V9764 AY.122.1 3.66e-1 GU280_gp10 N 29254 981G>T synonymous_variant S327S Ser327Ser
V8246 AY.122.1 1.28e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18435 18171T>C synonymous_variant D6057D Asp6057Asp
V6422 AY.122.1 3.78e-2 GU280_gp01_pp1a ORF1ab_pp1a 4276 4011C>T synonymous_variant Y1337Y Tyr1337Tyr
V9040 AY.122.1 1.66e-2 GU280_gp02 S 24766 3204C>T synonymous_variant V1068V Val1068Val
V7128 AY.122.1 5.74e-2 GU280_gp01_pp1a ORF1ab_pp1a 9805 9540G>T synonymous_variant L3180L Leu3180Leu
V7291 AY.122.1 1.03e-1 GU280_gp01_pp1a ORF1ab_pp1a 11020 10755C>T synonymous_variant L3585L Leu3585Leu
V7423 AY.122.1 1.11e-1 GU280_gp01_pp1a ORF1ab_pp1a 12076 11811C>T synonymous_variant N3937N Asn3937Asn
V7200 AY.122.1 2.13e-2 GU280_gp01_pp1a ORF1ab_pp1a 10252 9987C>T synonymous_variant F3329F Phe3329Phe
V6574 AY.122.1 2.97e-2 GU280_gp01_pp1a ORF1ab_pp1a 5365 5100C>T synonymous_variant Y1700Y Tyr1700Tyr
V9744 AY.122.1 1.51e-2 GU280_gp10 N 29179 906G>T synonymous_variant P302P Pro302Pro
V6350 AY.122.1 2.79e-2 GU280_gp01_pp1a ORF1ab_pp1a 3646 3381C>T synonymous_variant D1127D Asp1127Asp
V8812 AY.122.1 2.82e-2 GU280_gp02 S 22993 1431C>T synonymous_variant S477S Ser477Ser
V7170 AY.122.1 2.07e-2 GU280_gp01_pp1a ORF1ab_pp1a 10039 9774C>A synonymous_variant T3258T Thr3258Thr
V8490 AY.122.1 1.02e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 20397 20133G>A synonymous_variant K6711K Lys6711Lys
V9159 AY.122.1 1.11e-2 GU280_gp03 ORF3a 25521 129C>T synonymous_variant F43F Phe43Phe
V6557 AY.122.1 1.72e-2 GU280_gp01_pp1a ORF1ab_pp1a 5260 4995T>A synonymous_variant T1665T Thr1665Thr
V6395 AY.122.1 1.14e-2 GU280_gp01_pp1a ORF1ab_pp1a 4084 3819C>T synonymous_variant D1273D Asp1273Asp
V9741 AY.122.1 1.60e-2 GU280_gp10 N 29167 894C>T synonymous_variant Y298Y Tyr298Tyr
V6381 AY.122.1 1.83e-2 GU280_gp01_pp1a ORF1ab_pp1a 3994 3729G>A synonymous_variant L1243L Leu1243Leu
V7682 AY.122.1 1.19e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 14178 13914C>T synonymous_variant T4638T Thr4638Thr