Browsing Mutation Sites on Lineage AY.21


Overview of the global distribution of genome sequences on lineage AY.21.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage AY.21.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage AY.21.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 AY.21 9.97e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V2694 AY.21 9.94e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15451 15187G>A missense_variant G5063S Gly5063Ser
V2714 AY.21 2.79e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 15672 15408G>T missense_variant E5136D Glu5136Asp
V2789 AY.21 9.94e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 16466 16202C>T missense_variant P5401L Pro5401Leu
V3017 AY.21 9.94e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18166 17902C>T missense_variant P5968S Pro5968Ser
V3100 AY.21 3.35e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18651 18387G>T missense_variant E6129D Glu6129Asp
V1982 AY.21 9.89e-1 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V554 AY.21 2.79e-2 GU280_gp01_pp1a ORF1ab_pp1a 1890 1625G>T missense_variant R542L Arg542Leu
V3192 AY.21 9.44e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19220 18956C>T missense_variant A6319V Ala6319Val
V3247 AY.21 2.51e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 19723 19459G>T missense_variant V6487F Val6487Phe
V2126 AY.21 1.12e-2 GU280_gp01_pp1a ORF1ab_pp1a 11124 10859C>T missense_variant A3620V Ala3620Val
V74 AY.21 9.86e-1 GU280_gp01_pp1a ORF1ab_pp1a 210 -56G>T upstream_gene_variant None None
V2137 AY.21 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 11201 10936A>G missense_variant T3646A Thr3646Ala
V3533 AY.21 9.66e-1 GU280_gp02 S 21618 56C>G missense_variant T19R Thr19Arg
V3578 AY.21 1.40e-2 GU280_gp02 S 21764 204_209delACATGT disruptive_inframe_deletion H69_V70del His69_Val70del
V3608 AY.21 8.27e-1 GU280_gp02 S 21846 284C>T missense_variant T95I Thr95Ile
V3635 AY.21 1.59e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3671 AY.21 8.30e-1 GU280_gp02 S 22028 467_472delAGTTCA disruptive_inframe_deletion E156_R158delinsG Glu156_Arg158delinsGly
V3672 AY.21 1.96e-2 GU280_gp02 S 22029 467A>G missense_variant E156G Glu156Gly
V3676 AY.21 4.19e-2 GU280_gp02 S 22034 472A>G missense_variant R158G Arg158Gly
V3680 AY.21 2.23e-2 GU280_gp02 S 22081 519G>T missense_variant Q173H Gln173His
V85 AY.21 2.51e-2 GU280_gp01_pp1a ORF1ab_pp1a 222 -44C>T upstream_gene_variant None None
V3886 AY.21 9.89e-1 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3900 AY.21 9.78e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3969 AY.21 9.97e-1 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V4023 AY.21 9.94e-1 GU280_gp02 S 23604 2042C>G missense_variant P681R Pro681Arg
V4087 AY.21 1.12e-2 GU280_gp02 S 24014 2452A>G missense_variant I818V Ile818Val
V97 AY.21 9.92e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4143 AY.21 9.69e-1 GU280_gp02 S 24410 2848G>A missense_variant D950N Asp950Asn
V4337 AY.21 9.41e-1 GU280_gp03 ORF3a 25469 77C>T missense_variant S26L Ser26Leu
V4562 AY.21 1.12e-2 GU280_gp03 ORF3a 25961 569C>T missense_variant T190I Thr190Ile
V4678 AY.21 1.68e-2 GU280_gp04 E 26389 145G>T missense_variant V49L Val49Leu
V4760 AY.21 9.97e-1 GU280_gp05 M 26767 245T>C missense_variant I82T Ile82Thr
V4839 AY.21 1.12e-2 GU280_gp06 ORF6 27382 181G>C missense_variant D61H Asp61His
V4841 AY.21 1.12e-2 GU280_gp06 ORF6 27383 182A>T missense_variant D61V Asp61Val
V4844 AY.21 1.12e-2 GU280_gp07 ORF7a 27390 -4G>T upstream_gene_variant None None
V4895 AY.21 2.12e-1 GU280_gp07 ORF7a 27514 121G>T stop_gained E41* Glu41*
V4952 AY.21 9.83e-1 GU280_gp07 ORF7a 27638 245T>C missense_variant V82A Val82Ala
V5000 AY.21 9.86e-1 GU280_gp07 ORF7a 27752 359C>T missense_variant T120I Thr120Ile
V5049 AY.21 9.83e-1 GU280_gp08 ORF7b 27874 119C>T missense_variant T40I Thr40Ile
V5196 AY.21 8.80e-1 GU280_gp09 ORF8 28195 302G>T missense_variant R101L Arg101Leu
V5217 AY.21 9.86e-1 GU280_gp09 ORF8 28247 355_360delGATTTC conservative_inframe_deletion D119_F120del Asp119_Phe120del
V5218 AY.21 1.15e-1 GU280_gp09 ORF8 28248 355G>A missense_variant D119N Asp119Asn
V5220 AY.21 4.75e-2 GU280_gp09 ORF8 28249 356A>T missense_variant D119V Asp119Val
V5229 AY.21 1.59e-1 GU280_gp09 ORF8 28253 360C>A missense_variant F120L Phe120Leu
V5237 AY.21 5.17e-1 GU280_gp10 N 28270 1delA frameshift_variant&start_lost M1fs Met1fs
V5241 AY.21 1.40e-2 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5341 AY.21 9.72e-1 GU280_gp10 N 28461 188A>G missense_variant D63G Asp63Gly
V5357 AY.21 2.79e-2 GU280_gp10 N 28541 268G>T missense_variant A90S Ala90Ser
V5441 AY.21 1.96e-2 GU280_gp10 N 28851 578G>T missense_variant S193I Ser193Ile
V5462 AY.21 1.00e+0 GU280_gp10 N 28881 608G>T missense_variant R203M Arg203Met
V5496 AY.21 1.00e+0 GU280_gp10 N 28916 643G>T missense_variant G215C Gly215Cys
V2330 AY.21 1.40e-2 GU280_gp01_pp1a ORF1ab_pp1a 12462 12197C>T missense_variant T4066I Thr4066Ile
V5614 AY.21 9.97e-1 GU280_gp10 N 29402 1129G>T missense_variant D377Y Asp377Tyr
V5621 AY.21 6.98e-2 GU280_gp10 N 29409 1136C>T missense_variant T379I Thr379Ile
V5655 AY.21 1.12e-2 GU280_gp10 N 29520 1247C>T missense_variant S416L Ser416Leu
V5777 AY.21 9.16e-1 GU280_gp02 S 29742 *4358G>T downstream_gene_variant None None
V850 AY.21 1.12e-2 GU280_gp01_pp1a ORF1ab_pp1a 3122 2857G>T missense_variant D953Y Asp953Tyr
V856 AY.21 3.35e-2 GU280_gp01_pp1a ORF1ab_pp1a 3156 2891C>T missense_variant A964V Ala964Val
V1113 AY.21 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 4181 3916G>T missense_variant A1306S Ala1306Ser
V157 AY.21 1.96e-2 GU280_gp01_pp1a ORF1ab_pp1a 422 161_163delTAG disruptive_inframe_deletion V54del Val54del
V7 AY.21 1.68e-2 GU280_gp01_pp1a ORF1ab_pp1a 61 -205G>T upstream_gene_variant None None
V1442 AY.21 9.92e-1 GU280_gp01_pp1a ORF1ab_pp1a 6402 6137C>T missense_variant P2046L Pro2046Leu
V1458 AY.21 1.12e-2 GU280_gp01_pp1a ORF1ab_pp1a 6446 6181G>T missense_variant V2061F Val2061Phe
V260 AY.21 3.66e-1 GU280_gp01_pp1a ORF1ab_pp1a 685 421_429delAAGTCATTT conservative_inframe_deletion K141_F143del Lys141_Phe143del
V261 AY.21 1.40e-2 GU280_gp01_pp1a ORF1ab_pp1a 686 421A>G missense_variant K141E Lys141Glu
V266 AY.21 1.96e-2 GU280_gp01_pp1a ORF1ab_pp1a 694 429T>A missense_variant F143L Phe143Leu
V1609 AY.21 9.92e-1 GU280_gp01_pp1a ORF1ab_pp1a 7124 6859C>T missense_variant P2287S Pro2287Ser
V1647 AY.21 1.12e-2 GU280_gp01_pp1a ORF1ab_pp1a 7488 7223C>A missense_variant T2408N Thr2408Asn
V310 AY.21 3.91e-2 GU280_gp01_pp1a ORF1ab_pp1a 884 619C>T missense_variant R207C Arg207Cys
V1879 AY.21 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 9053 8788G>T missense_variant V2930L Val2930Leu
V6265 AY.21 9.92e-1 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V7027 AY.21 9.97e-1 GU280_gp01_pp1a ORF1ab_pp1a 8986 8721C>T synonymous_variant D2907D Asp2907Asp
V7316 AY.21 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 11332 11067A>G synonymous_variant V3689V Val3689Val
V9183 AY.21 8.69e-1 GU280_gp03 ORF3a 25647 255G>A synonymous_variant L85L Leu85Leu
V9685 AY.21 8.97e-1 GU280_gp10 N 28897 624T>C synonymous_variant A208A Ala208Ala
V9741 AY.21 8.97e-1 GU280_gp10 N 29167 894C>T synonymous_variant Y298Y Tyr298Tyr
V9758 AY.21 9.86e-1 GU280_gp10 N 29227 954G>T synonymous_variant S318S Ser318Ser
V9805 AY.21 5.59e-2 GU280_gp10 N 29479 1206T>C synonymous_variant D402D Asp402Asp
V8928 AY.21 4.47e-2 GU280_gp02 S 23917 2355C>T synonymous_variant V785V Val785Val
V9296 AY.21 1.96e-2 GU280_gp05 M 26606 84C>T synonymous_variant F28F Phe28Phe
V6891 AY.21 4.75e-2 GU280_gp01_pp1a ORF1ab_pp1a 7945 7680C>T synonymous_variant Y2560Y Tyr2560Tyr
V7610 AY.21 1.12e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 13536 13272C>T synonymous_variant Y4424Y Tyr4424Tyr
V9418 AY.21 1.12e-2 GU280_gp06 ORF6 27384 183T>C synonymous_variant D61D Asp61Asp
V8755 AY.21 1.12e-2 GU280_gp02 S 22522 960C>T synonymous_variant V320V Val320Val
V7523 AY.21 3.35e-2 GU280_gp01_pp1a ORF1ab_pp1a 12892 12627G>A synonymous_variant L4209L Leu4209Leu
V6676 AY.21 1.12e-2 GU280_gp01_pp1a ORF1ab_pp1a 6196 5931C>T synonymous_variant P1977P Pro1977Pro