Browsing Mutation Sites on Lineage AY.43.4


Overview of the global distribution of genome sequences on lineage AY.43.4.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage AY.43.4.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage AY.43.4.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 AY.43.4 9.98e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V445 AY.43.4 1.50e-2 GU280_gp01_pp1a ORF1ab_pp1a 1457 1192C>T missense_variant R398C Arg398Cys
V2694 AY.43.4 9.98e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15451 15187G>A missense_variant G5063S Gly5063Ser
V2742 AY.43.4 9.93e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15952 15688C>A missense_variant L5230I Leu5230Ile
V2789 AY.43.4 9.99e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 16466 16202C>T missense_variant P5401L Pro5401Leu
V2817 AY.43.4 8.76e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16741 16477G>T missense_variant V5493F Val5493Phe
V2835 AY.43.4 1.83e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16877 16613C>T missense_variant T5538I Thr5538Ile
V2961 AY.43.4 1.32e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 17746 17482C>T missense_variant P5828S Pro5828Ser
V2990 AY.43.4 5.57e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 17999 17735C>T missense_variant T5912I Thr5912Ile
V531 AY.43.4 1.21e-2 GU280_gp01_pp1a ORF1ab_pp1a 1820 1555G>A missense_variant G519S Gly519Ser
V3115 AY.43.4 2.49e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18745 18481G>T missense_variant V6161F Val6161Phe
V1982 AY.43.4 9.97e-1 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V3139 AY.43.4 7.01e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18937 18673G>T missense_variant G6225C Gly6225Cys
V3192 AY.43.4 9.02e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19220 18956C>T missense_variant A6319V Ala6319Val
V74 AY.43.4 9.79e-1 GU280_gp01_pp1a ORF1ab_pp1a 210 -56G>T upstream_gene_variant None None
V2137 AY.43.4 9.96e-1 GU280_gp01_pp1a ORF1ab_pp1a 11201 10936A>G missense_variant T3646A Thr3646Ala
V3520 AY.43.4 2.42e-2 GU280_gp02 S 21575 13C>T missense_variant L5F Leu5Phe
V3533 AY.43.4 9.77e-1 GU280_gp02 S 21618 56C>G missense_variant T19R Thr19Arg
V641 AY.43.4 1.03e-2 GU280_gp01_pp1a ORF1ab_pp1a 2189 1924C>T missense_variant L642F Leu642Phe
V3635 AY.43.4 2.71e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3671 AY.43.4 7.61e-1 GU280_gp02 S 22028 467_472delAGTTCA disruptive_inframe_deletion E156_R158delinsG Glu156_Arg158delinsGly
V3672 AY.43.4 1.36e-2 GU280_gp02 S 22029 467A>G missense_variant E156G Glu156Gly
V3676 AY.43.4 2.02e-2 GU280_gp02 S 22034 472A>G missense_variant R158G Arg158Gly
V3783 AY.43.4 1.32e-2 GU280_gp02 S 22329 767C>T missense_variant S256L Ser256Leu
V3833 AY.43.4 6.40e-1 GU280_gp02 S 22629 1067A>G missense_variant K356R Lys356Arg
V3886 AY.43.4 9.86e-1 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3900 AY.43.4 9.86e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3940 AY.43.4 3.96e-2 GU280_gp02 S 23202 1640C>T missense_variant T547I Thr547Ile
V3969 AY.43.4 1.00e+0 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V4023 AY.43.4 9.98e-1 GU280_gp02 S 23604 2042C>G missense_variant P681R Pro681Arg
V97 AY.43.4 9.83e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4143 AY.43.4 8.88e-1 GU280_gp02 S 24410 2848G>A missense_variant D950N Asp950Asn
V4337 AY.43.4 9.97e-1 GU280_gp03 ORF3a 25469 77C>T missense_variant S26L Ser26Leu
V4488 AY.43.4 2.49e-2 GU280_gp03 ORF3a 25726 334G>T missense_variant V112F Val112Phe
V4502 AY.43.4 5.94e-2 GU280_gp03 ORF3a 25775 383G>T missense_variant W128L Trp128Leu
V379 AY.43.4 2.49e-2 GU280_gp01_pp1a ORF1ab_pp1a 1191 926C>T missense_variant P309L Pro309Leu
V4760 AY.43.4 9.99e-1 GU280_gp05 M 26767 245T>C missense_variant I82T Ile82Thr
V4866 AY.43.4 3.63e-2 GU280_gp07 ORF7a 27434 41C>T missense_variant T14I Thr14Ile
V4879 AY.43.4 1.39e-2 GU280_gp07 ORF7a 27476 83C>T missense_variant T28I Thr28Ile
V4952 AY.43.4 9.88e-1 GU280_gp07 ORF7a 27638 245T>C missense_variant V82A Val82Ala
V5000 AY.43.4 9.92e-1 GU280_gp07 ORF7a 27752 359C>T missense_variant T120I Thr120Ile
V5049 AY.43.4 9.91e-1 GU280_gp08 ORF7b 27874 119C>T missense_variant T40I Thr40Ile
V5217 AY.43.4 9.22e-1 GU280_gp09 ORF8 28247 355_360delGATTTC conservative_inframe_deletion D119_F120del Asp119_Phe120del
V5218 AY.43.4 2.97e-2 GU280_gp09 ORF8 28248 355G>A missense_variant D119N Asp119Asn
V5220 AY.43.4 2.90e-2 GU280_gp09 ORF8 28249 356A>T missense_variant D119V Asp119Val
V5229 AY.43.4 1.87e-1 GU280_gp09 ORF8 28253 360C>A missense_variant F120L Phe120Leu
V5237 AY.43.4 9.17e-1 GU280_gp10 N 28270 1delA frameshift_variant&start_lost M1fs Met1fs
V5241 AY.43.4 2.42e-2 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5262 AY.43.4 9.41e-1 GU280_gp10 N 28299 26A>T missense_variant Q9L Gln9Leu
V5341 AY.43.4 9.09e-1 GU280_gp10 N 28461 188A>G missense_variant D63G Asp63Gly
V5462 AY.43.4 9.99e-1 GU280_gp10 N 28881 608G>T missense_variant R203M Arg203Met
V5496 AY.43.4 9.89e-1 GU280_gp10 N 28916 643G>T missense_variant G215C Gly215Cys
V5614 AY.43.4 9.97e-1 GU280_gp10 N 29402 1129G>T missense_variant D377Y Asp377Tyr
V5628 AY.43.4 2.71e-2 GU280_gp10 N 29421 1148C>T missense_variant P383L Pro383Leu
V5777 AY.43.4 8.37e-1 GU280_gp02 S 29742 *4358G>T downstream_gene_variant None None
V5826 AY.43.4 1.25e-2 GU280_gp02 S 29834 *4450T>C downstream_gene_variant None None
V841 AY.43.4 4.29e-2 GU280_gp01_pp1a ORF1ab_pp1a 3093 2828C>T missense_variant P943L Pro943Leu
V888 AY.43.4 1.80e-2 GU280_gp01_pp1a ORF1ab_pp1a 3259 2994G>T missense_variant Q998H Gln998His
V1113 AY.43.4 9.97e-1 GU280_gp01_pp1a ORF1ab_pp1a 4181 3916G>T missense_variant A1306S Ala1306Ser
V1271 AY.43.4 9.90e-1 GU280_gp01_pp1a ORF1ab_pp1a 5241 4976C>T missense_variant P1659L Pro1659Leu
V1442 AY.43.4 9.85e-1 GU280_gp01_pp1a ORF1ab_pp1a 6402 6137C>T missense_variant P2046L Pro2046Leu
V1606 AY.43.4 1.10e-2 GU280_gp01_pp1a ORF1ab_pp1a 7104 6839C>T missense_variant T2280I Thr2280Ile
V1609 AY.43.4 9.76e-1 GU280_gp01_pp1a ORF1ab_pp1a 7124 6859C>T missense_variant P2287S Pro2287Ser
V295 AY.43.4 1.32e-2 GU280_gp01_pp1a ORF1ab_pp1a 816 551G>A missense_variant R184H Arg184His
V314 AY.43.4 3.70e-2 GU280_gp01_pp1a ORF1ab_pp1a 900 635C>T missense_variant S212L Ser212Leu
V1877 AY.43.4 2.46e-2 GU280_gp01_pp1a ORF1ab_pp1a 9050 8785C>T missense_variant P2929S Pro2929Ser
V1879 AY.43.4 9.96e-1 GU280_gp01_pp1a ORF1ab_pp1a 9053 8788G>T missense_variant V2930L Val2930Leu
V1938 AY.43.4 8.14e-2 GU280_gp01_pp1a ORF1ab_pp1a 9561 9296C>T missense_variant S3099L Ser3099Leu
V6224 AY.43.4 2.14e-1 GU280_gp01_pp1a ORF1ab_pp1a 2749 2484C>T synonymous_variant D828D Asp828Asp
V6265 AY.43.4 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6850 AY.43.4 1.03e-1 GU280_gp01_pp1a ORF1ab_pp1a 7600 7335C>T synonymous_variant C2445C Cys2445Cys
V7027 AY.43.4 9.96e-1 GU280_gp01_pp1a ORF1ab_pp1a 8986 8721C>T synonymous_variant D2907D Asp2907Asp
V7316 AY.43.4 9.97e-1 GU280_gp01_pp1a ORF1ab_pp1a 11332 11067A>G synonymous_variant V3689V Val3689Val
V8292 AY.43.4 9.91e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18744 18480C>T synonymous_variant Y6160Y Tyr6160Tyr
V8521 AY.43.4 3.15e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 20679 20415G>T synonymous_variant P6805P Pro6805Pro
V8964 AY.43.4 9.91e-1 GU280_gp02 S 24130 2568C>T synonymous_variant N856N Asn856Asn
V9582 AY.43.4 6.91e-1 GU280_gp10 N 28378 105G>T synonymous_variant A35A Ala35Ala
V6917 AY.43.4 1.27e-1 GU280_gp01_pp1a ORF1ab_pp1a 8131 7866G>A synonymous_variant K2622K Lys2622Lys
V6381 AY.43.4 2.71e-2 GU280_gp01_pp1a ORF1ab_pp1a 3994 3729G>A synonymous_variant L1243L Leu1243Leu
V7507 AY.43.4 1.80e-2 GU280_gp01_pp1a ORF1ab_pp1a 12815 12550C>T synonymous_variant L4184L Leu4184Leu
V7626 AY.43.4 1.76e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 13665 13401C>T synonymous_variant H4467H His4467His
V9827 AY.43.4 3.81e-2 GU280_gp11 ORF10 29614 57C>T synonymous_variant C19C Cys19Cys
V6247 AY.43.4 2.02e-2 GU280_gp01_pp1a ORF1ab_pp1a 2902 2637C>T synonymous_variant V879V Val879Val
V9670 AY.43.4 2.57e-2 GU280_gp10 N 28807 534C>T synonymous_variant G178G Gly178Gly
V6407 AY.43.4 1.28e-2 GU280_gp01_pp1a ORF1ab_pp1a 4162 3897G>T synonymous_variant V1299V Val1299Val
V5990 AY.43.4 2.20e-2 GU280_gp01_pp1a ORF1ab_pp1a 1150 885C>T synonymous_variant G295G Gly295Gly
V9174 AY.43.4 1.25e-2 GU280_gp03 ORF3a 25603 211C>T synonymous_variant L71L Leu71Leu
V5915 AY.43.4 1.14e-2 GU280_gp01_pp1a ORF1ab_pp1a 679 414C>T synonymous_variant A138A Ala138Ala