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The current mutation

ID: V6663
DNA: 5805C>T
Protein: I1935I
Position: 6070








COV2Var annotation categories







Summary information of mutation (5805C>T)

Basic Information about Mutation.

  Gene Information   Gene ID   GU280_gp01_pp1a
  Gene Name   ORF1ab_pp1a
  Gene Type   protein_coding
  Genome position   6070
  Reference genome   GenBank ID: NC_045512.2
  Mutation type   synonymous_variant
  DNA Level   DNA Mutation: 5805C>T
  Ref Seq: C
  Mut Seq: T
  Protein Level   Protein 1-letter Mutation: I1935I
  Protein 3-letter Mutation: Ile1935Ile

Overview of the genomic positions of Mutation.
Note: The annotated 12 genes were retrieved from GeneBank (Accession: NC_045512.2). "MP" represents genomic position of mutation.





Analyzing the distribution of mutation (5805C>T) across geographic regions, temporal trends, and lineages

The count of genome sequences harboring this mutation and its distribution across global regions offer insights into regional variations.
Note: The distribution of mutation across 218 geographical regions. Color representation of genome sequence counts. The data is obtained from GISAID's metadata, specifically capturing the regional distribution of genomic sequences.



The dynamic count of genome sequences containing this mutation over time.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to the respective month. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.



For every time point represented in the graph above, identifying the top 3 lineages with the highest count of genome sequences carrying this mutation aids in pinpointing noteworthy lineages for further analysis.
Note: Users can filter the lineages by entering a "Year-Month" term in the search box. For example, entering 2020-01 will display lineages that appeared in January 2020. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.

Collection date Lineage Total lineage monthly counts Lineage-specific monthly counts Lineage-specific monthly frequency
2020-10 B.1.367 292 134 4.59e-1
2020-10 B.1.1.434 292 41 1.40e-1
2020-10 B.1.177 292 39 1.34e-1
2020-11 B.1.2 260 101 3.88e-1
2020-11 B.1.367 260 54 2.08e-1
2020-11 B.1.1 260 14 5.38e-2
2020-12 B.1.2 437 117 2.68e-1
2020-12 B.1.602 437 61 1.40e-1
2020-12 B.1.367 437 41 9.38e-2
2020-03 B.40 20 8 4.00e-1
2020-03 B.1 20 5 2.50e-1
2020-03 B.1.1 20 2 1.00e-1
2020-04 A.2 30 12 4.00e-1
2020-04 B.1 30 4 1.33e-1
2020-04 B.40 30 3 1.00e-1
2020-05 B.1.1.208 30 18 6.00e-1
2020-05 B.1.1 30 4 1.33e-1
2020-05 B.1.128 30 3 1.00e-1
2020-06 B.1 17 5 2.94e-1
2020-06 B.1.1 17 5 2.94e-1
2020-06 B.1.329 17 3 1.76e-1
2020-07 B.1.367 57 15 2.63e-1
2020-07 B.1.1 57 14 2.46e-1
2020-07 B.1 57 11 1.93e-1
2020-08 B.1.367 389 353 9.07e-1
2020-08 B.1.1 389 8 2.06e-2
2020-08 A.2.4 389 4 1.03e-2
2020-09 B.1.367 294 257 8.74e-1
2020-09 B.1.1 294 8 2.72e-2
2020-09 B.1.1.434 294 8 2.72e-2
2021-01 B.1.2 886 200 2.26e-1
2021-01 B.1.177.12 886 99 1.12e-1
2021-01 B.1.177 886 92 1.04e-1
2021-10 AY.4 1003 207 2.06e-1
2021-10 AY.122 1003 135 1.35e-1
2021-10 AY.103 1003 120 1.20e-1
2021-11 AY.4 1558 349 2.24e-1
2021-11 AY.44 1558 166 1.07e-1
2021-11 AY.122 1558 163 1.05e-1
2021-12 AY.4 1327 283 2.13e-1
2021-12 AY.122 1327 113 8.52e-2
2021-12 AY.103 1327 84 6.33e-2
2021-02 B.1.2 912 311 3.41e-1
2021-02 B.1.1.7 912 189 2.07e-1
2021-02 B.1.177.12 912 59 6.47e-2
2021-03 B.1.2 794 322 4.06e-1
2021-03 B.1.1.7 794 269 3.39e-1
2021-03 B.1.258 794 41 5.16e-2
2021-04 B.1.1.7 681 430 6.31e-1
2021-04 B.1.2 681 70 1.03e-1
2021-04 B.1.429 681 66 9.69e-2
2021-05 B.1.1.7 462 313 6.77e-1
2021-05 P.1 462 32 6.93e-2
2021-05 B.1.466.2 462 22 4.76e-2
2021-06 B.1.1.7 236 97 4.11e-1
2021-06 P.1 236 12 5.08e-2
2021-06 AY.6 236 11 4.66e-2
2021-07 B.1.1.7 343 41 1.20e-1
2021-07 AY.44 343 32 9.33e-2
2021-07 AY.6 343 28 8.16e-2
2021-08 AY.122 702 156 2.22e-1
2021-08 AY.44 702 105 1.50e-1
2021-08 AY.103 702 75 1.07e-1
2021-09 AY.122 824 140 1.70e-1
2021-09 AY.4 824 129 1.57e-1
2021-09 AY.44 824 125 1.52e-1
2022-01 BA.1.1 523 127 2.43e-1
2022-01 BA.1 523 85 1.63e-1
2022-01 BA.1.15 523 37 7.07e-2
2022-10 XBF 295 59 2.00e-1
2022-10 BA.5.1.3 295 23 7.80e-2
2022-10 BA.5.2.8 295 20 6.78e-2
2022-11 XBF 1173 869 7.41e-1
2022-11 BM.1.1.1 1173 64 5.46e-2
2022-11 BA.5.2.8 1173 17 1.45e-2
2022-12 XBF 2171 1794 8.26e-1
2022-12 BM.1.1.1 2171 128 5.90e-2
2022-12 BQ.1.1 2171 27 1.24e-2
2022-02 BA.1.1 488 201 4.12e-1
2022-02 BA.2 488 78 1.60e-1
2022-02 BA.1 488 36 7.38e-2
2022-03 BA.2 381 191 5.01e-1
2022-03 BA.1.1 381 87 2.28e-1
2022-03 BA.2.9 381 19 4.99e-2
2022-04 BA.2 330 225 6.82e-1
2022-04 BA.2.9 330 33 1.00e-1
2022-04 BA.2.3 330 25 7.58e-2
2022-05 BA.2 343 142 4.14e-1
2022-05 BG.1 343 98 2.86e-1
2022-05 BA.2.9 343 32 9.33e-2
2022-06 BG.1 383 150 3.92e-1
2022-06 BA.2 383 103 2.69e-1
2022-06 BA.5.1.23 383 16 4.18e-2
2022-07 BG.1 271 42 1.55e-1
2022-07 BA.5 271 26 9.59e-2
2022-07 BA.2 271 24 8.86e-2
2022-08 BA.5.1.3 229 26 1.14e-1
2022-08 BA.5.1.23 229 20 8.73e-2
2022-08 BA.4.1 229 17 7.42e-2
2022-09 BA.4.6 245 36 1.47e-1
2022-09 BA.5.1.3 245 36 1.47e-1
2022-09 BA.5.6 245 22 8.98e-2
2023-01 XBF 2901 2548 8.78e-1
2023-01 BM.1.1.1 2901 146 5.03e-2
2023-01 XBB.1.5 2901 58 2.00e-2
2023-02 XBF 1119 970 8.67e-1
2023-02 BM.1.1.1 1119 91 8.13e-2
2023-02 XBB.1.5 1119 31 2.77e-2

The count of genome sequences and the frequency of this mutation in each lineage.
Note: Displaying mutation frequencies (>0.01) among 2,735 lineages. Mutation Count represents the count of sequences carrying this mutation. Users can filter the lineages by entering a search term in the search box. For example, entering "A.1" will display A.1 lineages. The data is obtained from GISAID's metadata, specifically capturing the lineage of genomic sequences. Mutation count: Count of sequences carrying this mutation.

Mutation ID Lineage Mutation frequency Mutation count Earliest lineage emergence Latest lineage emergence
V6663 B.1.258 1.09e-2 169 2020-3-22 2022-11-26
V6663 BA.5.1.3 1.08e-2 108 2022-2-24 2023-2-13
V6663 A.2 1.06e-2 13 2020-2-17 2021-7-31
V6663 AY.46.2 1.19e-2 21 2021-3-9 2022-1-27
V6663 B.1.1.189 8.99e-2 56 2020-4-11 2021-10-16
V6663 B.1.1.434 5.00e-2 140 2020-5-21 2021-6-22
V6663 B.1.177.54 1.94e-2 30 2020-8-17 2021-10-25
V6663 B.1.367 9.91e-1 908 2020-7-13 2021-12-7
V6663 B.1.466.2 1.32e-2 39 2020-8-6 2022-4-16
V6663 B.1.596 2.46e-2 65 2020-4-11 2021-9-22
V6663 B.1.619.1 1.24e-2 20 2021-2-22 2021-9-21
V6663 BA.5.2.8 4.97e-2 70 2022-4-8 2023-1-13
V6663 BF.7.6 1.15e-2 38 2022-2-21 2023-2-18
V6663 BM.1.1.1 3.85e-1 440 2022-7-8 2023-2-20
V6663 AY.124 1.72e-2 158 2020-8-11 2022-6-13
V6663 B.1.177.12 2.61e-2 167 2020-3-30 2021-4-12
V6663 XBF 9.53e-1 6250 2022-7-27 2023-2-23
V6663 AH.3 5.95e-2 16 2020-10-23 2021-9-22
V6663 B.1.1.208 1.27e-1 9 2020-3-22 2020-6-22
V6663 B.1.1.27 3.51e-2 6 2020-3-21 2021-3-22
V6663 B.1.1.325 7.69e-2 3 2020-7-16 2021-2-23
V6663 B.1.1.389 3.05e-2 5 2020-6-18 2021-4-7
V6663 B.1.1.419 1.96e-2 4 2020-3-14 2021-8-7
V6663 B.1.36.19 1.90e-2 2 2020-7-16 2022-6-5
V6663 B.1.476 3.33e-1 2 2020-3-29 2020-9-22
V6663 B.1.602 4.78e-1 97 2020-7-7 2021-2-12
V6663 B.1.603 8.97e-1 78 2020-11-10 2021-4-17
V6663 BG.1 9.93e-1 304 2022-4-15 2022-8-29
V6663 BM.2.1 3.42e-2 4 2022-7-27 2023-1-31
V6663 BM.2 2.07e-2 7 2022-6-18 2023-2-20
V6663 C.11 3.12e-2 3 2020-4-1 2021-5-2
V6663 C.26 5.71e-2 8 2020-4-28 2021-8-27
V6663 CC.1 1.54e-2 4 2022-6-27 2023-1-21
V6663 CS.1 1.00e+0 11 2022-8-15 2022-10-28
V6663 XAN 1.49e-2 3 2022-5-10 2022-10-24
V6663 XBC.1.1 1.34e-2 2 2022-11-2 2023-2-18






Examining mutation (5805C>T) found in abundant sequences of non-human animal hosts

Exploring mutation presence across 35 non-human animal hosts for cross-species transmission.
Note: We retained the mutation that appear in at least three non-human animal hosts' sequences. The data is obtained from GISAID's metadata, specifically capturing the host of genomic sequences.

Animal host Lineage Source region Collection date Accession ID
Neovison vison B.1.177.60 Latvia 2021-11-10 EPI_ISL_10437358
Neogale vison B.1.177.60 Lithuania 2021-11-3 EPI_ISL_10571267
Odocoileus virginianus AY.44 Canada 2021-11-6 EPI_ISL_10168587
Odocoileus virginianus AY.44 Canada 2021-11-8 EPI_ISL_10170149
Odocoileus virginianus AY.44 Canada 2021-11-7 EPI_ISL_10169675
Odocoileus virginianus AY.44 USA 2022-1-3 EPI_ISL_16372324
Odocoileus virginianus B.1.1.7 USA 2021-11-30 EPI_ISL_16366929




Association between mutation (5805C>T) and patients of different ages, genders, and statuses

Note: The logistic regression model was employed to examine changes in patient data before and after the mutation. The logistic regression model was conducted using the glm function in R. The data is obtained from GISAID's metadata, specifically capturing the patient status, gender, and age of genomic sequences.

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient statuses (ambulatory, deceased, homebound, hospitalized, mild, and recovered) based on GISAID classifications. In the analysis exploring the association between mutation and patient status, the model included mutation, patient status, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient status Ambulatory -1.68e+0 1.12e+0 -1.50e+0 1.32e-1 Decrease
Deceased -5.48e-1 6.31e-1 -8.68e-1 3.86e-1 Decrease
Homebound 2.66e+0 7.83e-1 3.40e+0 6.74e-4 Increase
Hospitalized -6.18e-2 3.07e-1 -2.01e-1 8.40e-1 Decrease
Mild 1.08e+0 4.25e-1 2.55e+0 1.07e-2 Increase
Recovered -1.56e+1 3.38e+2 -4.61e-2 9.63e-1 Decrease

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient age (0-17, 18-39, 40-64, 65-84, and 85+). In the analysis exploring the association between mutation and patient age, the model included mutation, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient age, years 0-17 -8.49e-1 1.21e-1 -7.02e+0 2.28e-12 Decrease
18-39 -1.55e-1 4.51e-2 -3.44e+0 5.85e-4 Decrease
40-64 -2.03e-1 4.38e-2 -4.62e+0 3.78e-6 Decrease
65-84 3.41e-1 4.98e-2 6.85e+0 7.28e-12 Increase
>=85 7.30e-1 7.45e-2 9.79e+0 1.22e-22 Increase

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient gender (male and female). In the analysis exploring the association between mutation and patient gender, the model included mutation, patient gender, patient age, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient gender Male 1.88e-2 4.17e-2 4.49e-1 6.53e-1 Increase





Investigating natural selection at mutation (5805C>T) site for genetic adaptation and diversity

Note: Investigating the occurrence of positive selection or negative selection at this mutation site reveals implications for genetic adaptation and diversity.

The MEME method within the HyPhy software was employed to analyze positive selection. MEME: episodic selection.
Note: List of sites found to be under episodic selection by MEME (p < 0.05). "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site P-value Lineage Method

The FEL method within the HyPhy software was employed to analyze both positive and negative selection. FEL: pervasive selection on samll datasets.
Note: List of sites found to be under pervasive selection by FEL (p < 0.05). A beta value greater than alpha signifies positive selection, while a beta value smaller than alpha signifies negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Alpha Beta P-value Lineage Method

The FUBAR method within the HyPhy software was employed to analyze both positive and negative selection. FUBAR: pervasive selection on large datasets.
Note: List of sites found to be under pervasive selection by FUBAR (prob > 0.95). A prob[alpha < beta] value exceeding 0.95 indicates positive selection, while a prob[alpha > beta] value exceeding 0.95 indicates negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Prob[alpha>beta] Prob[alpha<beta] Lineage Method




Alterations in protein physicochemical properties induced by mutation (5805C>T)

Understanding the alterations in protein physicochemical properties can reveal the evolutionary processes and adaptive changes of viruses
Note: ProtParam software was used for the analysis of physicochemical properties. Significant change threshold: A change exceeding 10% compared to the reference is considered a significant change. "GRAVY" is an abbreviation for "grand average of hydropathicity".

Group Protein name Molecular weight Theoretical PI Extinction coefficients Aliphatic index GRAVY




Alterations in protein stability induced by mutation (5805C>T)

The impact of mutations on protein stability directly or indirectly affects the biological characteristics, adaptability, and transmission capacity of the virus
Note: iMutant 2.0 was utilized to analyze the effects of mutations on protein stability. pH 7 and a temperature of 25°C are employed to replicate the in vitro environment. pH 7.4 and a temperature of 37°C are utilized to simulate the in vivo environment.

Mutation Protein name Mutation type Position ΔDDG Stability pH Temperature Condition




Impact on protein function induced by mutation (5805C>T)

The impact of mutations on protein function
Note: The MutPred2 software was used to predict the pathogenicity of a mutation and gives the molecular mechanism of pathogenicity. A score above 0.5 indicates an increased likelihood of pathogenicity. "Pr" is the abbreviation for "proportion. P" is the abbreviation for "p-value.

Mutation Protein name Mutation type Score Molecular mechanisms




Exploring mutation (5805C>T) distribution within intrinsically disordered protein regions

Intrinsically Disordered Proteins (IDPs) which refers to protein regions that have no unique 3D structure. In viral proteins, mutations in the disordered regions s are critical for immune evasion and antibody escape, suggesting potential additional implications for vaccines and monoclonal therapeutic strategies.
Note: The iupred3 software was utilized for analyzing IDPs. A score greater than 0.5 is considered indicative of an IDP. In the plot, "POS" represents the position of the mutation.





Alterations in enzyme cleavage sites induced by mutation (5805C>T)

Exploring the impact of mutations on the cleavage sites of 28 enzymes.
Note: The PeptideCutter software was used for detecting enzymes cleavage sites. The increased enzymes cleavage sites refer to the cleavage sites in the mutated protein that are added compared to the reference protein. Conversely, the decreased enzymes cleavage sites indicate the cleavage sites in the mutated protein that are reduced compared to the reference protein.

Mutation Protein name Genome position Enzyme name Increased cleavage sites Decreased cleavage sites




Impact of spike protein mutation (5805C>T) on antigenicity and immunogenicity

Investigating the impact of mutations on antigenicity and immunogenicity carries important implications for vaccine design and our understanding of immune responses.
Note: An absolute change greater than 0.0102 (three times the median across sites) in antigenicity score is considered significant. An absolute changegreater than 0.2754 (three times the median across sites) in immunogenicity score is considered significant. The VaxiJen tool was utilized for antigenicity analysis. The IEDB tool was used for immunogenicity analysis. Antigens with a prediction score of more than 0.4 for this tool are considered candidate antigens. MHC I immunogenicity score >0, indicating a higher probability to stimulate an immune response.

Group Protein name Protein region Antigenicity score Immunogenicity score




Impact of mutation (5805C>T) on viral transmissibility by the affinity between RBD and ACE2 receptor

Unraveling the impact of mutations on the interaction between the receptor binding domain (RBD) and ACE2 receptor using deep mutational scanning (DMS) experimental data to gain insights into their effects on viral transmissibility.
Note: The ΔBinding affinity represents the disparity between the binding affinity of a mutation and the reference binding affinity. A positive Δbinding affinity value (Δlog10(KD,app) > 0) signifies an increased affinity between RBD and ACE2 receptor due to the mutation. Conversely, a negative value (Δlog10(KD,app) < 0) indicates a reduced affinity between RBD and ACE2 receptor caused by the mutation. A p-value smaller than 0.05 indicates significance. "Ave mut bind" represents the average binding affinity of this mutation. "Ave ref bind" refers to the average binding affinity at a site without any mutation (reference binding affinity).

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Mutation Protein name Protein region Mutation Position Ave mut bind Ave ref bind ΔBinding affinity P-value Image


The interface between the receptor binding domain (RBD) and ACE2 receptor is depicted in the crystal structure 6JM0.
Note: The structure 6M0J encompasses the RBD range of 333 to 526. The binding sites (403-406, 408, 417, 439, 445-447, 449, 453, 455-456, 473-478, 484-498, and 500-506) on the RBD that interface with ACE2 are indicated in magenta. The binding sites on the RBD that have been identified through the interface footprints experiment. The ACE2 binding sites within the interface are shown in cyan, representing residues within 5Å proximity to the RBD binding sites. The mutation within the RBD range of 333 to 526 is depicted in red.

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Impact of mutation (5805C>T) on immune escape by the affinity between RBD and antibody/serum

By utilizing experimental data from deep mutational scanning (DMS), we can uncover how mutations affect the interaction between the receptor binding domain (RBD) and antibodies/serum. This approach provides valuable insights into strategies for evading the host immune response.
Note: We considered a mutation to mediate strong escape if the escape score exceeded 0.1 (10% of the maximum score of 1). A total of 1,504 antibodies/serum data were collected for this analysis. "Condition name" refers to the name of the antibodies/serum. "Mut escape score" represents the escape score of the mutation in that specific condition. "Avg mut escape score" indicates the average escape score of the mutation site in that condition, considering the occurrence of this mutation and other mutations. Class 1 antibodies bind to an epitope only in the RBD “up” conformation, and are the most abundant. Class 2 antibodies bind to the RBD both in “up” and “down” conformations. Class 3 and class 4 antibodies both bind outside the ACE2 binding site. Class 3 antibodies bind the RBD in both the open and closed conformation, while class 4 antibodies bind only in the open conformation.

Mutation Condition name Condition type Condition subtype Condition year Mut escape score Avg mut escape score




Investigating the co-mutation patterns of mutation (5805C>T) across 2,735 viral lineages

Investigating the co-mutation patterns of SARS-CoV-2 across 2,735 viral lineages to unravel the cooperative effects of different mutations. In biological research, correlation analysis of mutation sites helps us understand whether there is a close relationship or interaction between certain mutations.
Note: The Spearman correlation coefficient is used to calculate the correlation between two mutations within each Pango lineage. Holm–Bonferroni method was used for multiple test adjustment. We retained mutation pairs with correlation values greater than 0.6 or less than -0.6 and Holm–Bonferroni corrected p-values less than 0.05.

Associated mutation ID DNA mutation Mutation type Protein name Protein mutation correlation coefficient Lineage
V2405 12746C>T missense_variant ORF1ab_pp1a T4249I 6.98e-1 B.1.177
V5990 885C>T synonymous_variant ORF1ab_pp1a G295G 7.42e-1 AY.126
V4182 3253G>A missense_variant S G1085R 6.27e-1 AY.44
V3267 19631C>T missense_variant ORF1ab_pp1ab A6544V 7.13e-1 B.1.2
V3286 19739A>G missense_variant ORF1ab_pp1ab D6580G 6.24e-1 B.1.2
V4319 52G>T missense_variant ORF3a G18C 8.23e-1 B.1.2
V4610 719C>T missense_variant ORF3a P240L 6.17e-1 B.1.2
V722 2269G>T missense_variant ORF1ab_pp1a V757F 7.34e-1 B.1.2
V4658 -15G>T upstream_gene_variant E None 1.00e+0 A.2.5
V6027 1158A>G synonymous_variant ORF1ab_pp1a E386E 1.00e+0 A.2.5
V6549 4935G>A synonymous_variant ORF1ab_pp1a R1645R 7.07e-1 A.2.5
V6754 6465C>T synonymous_variant ORF1ab_pp1a N2155N 7.07e-1 A.2.5
V868 2941G>T missense_variant ORF1ab_pp1a D981Y 1.00e+0 A.2.5
V9584 108A>G synonymous_variant N R36R 1.00e+0 A.2.5
V9801 1176G>T synonymous_variant N V392V 1.00e+0 A.2.5
V6081 1581A>G synonymous_variant ORF1ab_pp1a K527K 1.00e+0 A.2
V7006 8568A>G synonymous_variant ORF1ab_pp1a A2856A 9.60e-1 A.2
V9069 3393A>G synonymous_variant S G1131G 1.00e+0 A.2
V9708 750T>C synonymous_variant N S250S 9.60e-1 A.2
V3275 19697C>T missense_variant ORF1ab_pp1ab T6566M 7.12e-1 AD.2
V4011 2025G>T missense_variant S Q675H 7.73e-1 AD.2
V5529 740C>T missense_variant N T247I 7.73e-1 AD.2
V6940 8028C>T synonymous_variant ORF1ab_pp1a T2676T 8.70e-1 AD.2
V7984 16164C>T synonymous_variant ORF1ab_pp1ab Y5388Y 6.04e-1 AD.2
V580 1694C>T missense_variant ORF1ab_pp1a A565V 8.16e-1 AE.8
V6561 5016C>T synonymous_variant ORF1ab_pp1a N1672N 1.00e+0 AE.8
V1123 3968A>G missense_variant ORF1ab_pp1a D1323G 6.54e-1 AY.102
V2375 12524C>T missense_variant ORF1ab_pp1a T4175I 6.27e-1 AY.102
V3933 1558G>T missense_variant S A520S 8.12e-1 AY.102
V716 2258C>T missense_variant ORF1ab_pp1a T753I 6.27e-1 AY.102
V1265 4941G>T missense_variant ORF1ab_pp1a M1647I 1.00e+0 AY.104
V3420 20623G>A missense_variant ORF1ab_pp1ab G6875R 1.00e+0 AY.104
V608 1796C>T missense_variant ORF1ab_pp1a A599V 1.00e+0 AY.104
V6461 4317C>T synonymous_variant ORF1ab_pp1a N1439N 1.00e+0 AY.104
V6553 4956C>T synonymous_variant ORF1ab_pp1a H1652H 6.31e-1 AY.104
V4085 2435C>T missense_variant S P812L 7.33e-1 AY.107
V1666 7490A>G missense_variant ORF1ab_pp1a K2497R 1.00e+0 AY.109
V2831 16595C>T missense_variant ORF1ab_pp1ab A5532V 1.00e+0 AY.109
V4549 530G>T missense_variant ORF3a S177I 1.00e+0 AY.109
V8191 17775A>G synonymous_variant ORF1ab_pp1ab Q5925Q 1.00e+0 AY.109
V7806 14751T>C synonymous_variant ORF1ab_pp1ab D4917D 7.07e-1 AY.110
V8671 297C>T synonymous_variant S N99N 8.20e-1 AY.117
V4625 766G>A missense_variant ORF3a V256I 7.32e-1 AY.118
V4633 775G>T missense_variant ORF3a V259L 8.46e-1 AY.118
V5198 308C>T missense_variant ORF8 S103L 7.96e-1 AY.118
V8989 2796C>A synonymous_variant S G932G 7.53e-1 AY.118
V4608 717G>T missense_variant ORF3a E239D 8.24e-1 AY.119
V5424 544G>T missense_variant N A182S 1.00e+0 AY.120.1
V7206 10071C>T synonymous_variant ORF1ab_pp1a A3357A 1.00e+0 AY.120.1
V593 1738C>T missense_variant ORF1ab_pp1a L580F 1.00e+0 AY.120.2.1
V6722 6180C>T synonymous_variant ORF1ab_pp1a D2060D 1.00e+0 AY.120.2.1
V5526 727G>T missense_variant N G243C 7.07e-1 AY.122.1
V9254 804G>T synonymous_variant ORF3a T268T 7.07e-1 AY.122.1
V1314 5356C>T missense_variant ORF1ab_pp1a P1786S 6.32e-1 AY.124
V6143 1956C>T synonymous_variant ORF1ab_pp1a I652I 8.11e-1 AY.124
V6800 6843C>T synonymous_variant ORF1ab_pp1a Y2281Y 8.77e-1 AY.124
V8133 17298G>T synonymous_variant ORF1ab_pp1ab R5766R 8.03e-1 AY.124
V2292 11867C>T missense_variant ORF1ab_pp1a A3956V 6.45e-1 AY.127
V1822 8474C>T missense_variant ORF1ab_pp1a T2825I 1.00e+0 AY.134
V9120 3714C>T synonymous_variant S T1238T 1.00e+0 AY.134
V9243 732C>T synonymous_variant ORF3a V244V 1.00e+0 AY.134
V2764 15933G>T missense_variant ORF1ab_pp1ab E5311D 1.00e+0 AY.15
V5621 1136C>T missense_variant N T379I 1.00e+0 AY.15
V6419 3990G>A synonymous_variant ORF1ab_pp1a P1330P 7.07e-1 AY.15
V7197 9963C>T synonymous_variant ORF1ab_pp1a L3321L 1.00e+0 AY.15
V3327 20011G>T missense_variant ORF1ab_pp1ab D6671Y 7.07e-1 AY.17
V7404 11709T>C synonymous_variant ORF1ab_pp1a D3903D 7.07e-1 AY.17
V3895 1426G>A missense_variant S G476S 1.00e+0 AY.25.2
V6426 4056C>T synonymous_variant ORF1ab_pp1a A1352A 1.00e+0 AY.28
V6607 5343A>G synonymous_variant ORF1ab_pp1a K1781K 1.00e+0 AY.28
V4206 3390A>G missense_variant S I1130M 1.00e+0 AY.30
V5278 47C>T missense_variant N T16M 7.90e-1 AY.3.1
V7460 12102C>T synonymous_variant ORF1ab_pp1a F4034F 6.25e-1 AY.3.1
V1123 3968A>G missense_variant ORF1ab_pp1a D1323G 9.13e-1 AY.36.1
V2375 12524C>T missense_variant ORF1ab_pp1a T4175I 9.13e-1 AY.36.1
V5759 *4349C>T downstream_gene_variant S None 8.66e-1 AY.36.1
V716 2258C>T missense_variant ORF1ab_pp1a T753I 7.38e-1 AY.36.1
V7520 12615C>T synonymous_variant ORF1ab_pp1a I4205I 6.54e-1 AY.36.1
V6703 6099G>A synonymous_variant ORF1ab_pp1a A2033A 6.58e-1 AY.36
V3556 80C>T missense_variant S A27V 1.00e+0 AY.38
V7152 9678C>T synonymous_variant ORF1ab_pp1a Y3226Y 1.00e+0 AY.38
V8451 19752C>T synonymous_variant ORF1ab_pp1ab D6584D 7.07e-1 AY.38
V2376 12527A>G missense_variant ORF1ab_pp1a K4176R 7.07e-1 AY.39.1
V7955 15978T>A synonymous_variant ORF1ab_pp1ab V5326V 8.16e-1 AY.39.2
V2697 15257T>A missense_variant ORF1ab_pp1ab F5086Y 7.07e-1 AY.4.17
V9677 576C>T synonymous_variant N N192N 1.00e+0 AY.41
V6139 1911A>G synonymous_variant ORF1ab_pp1a E637E 6.74e-1 AY.4.2.3
V6850 7335C>T synonymous_variant ORF1ab_pp1a C2445C 9.13e-1 AY.4.2.3
V497 1351C>T missense_variant ORF1ab_pp1a L451F 1.00e+0 AY.43.2
V550 1619C>T missense_variant ORF1ab_pp1a A540V 7.07e-1 AY.43.2
V8749 906G>T synonymous_variant S T302T 1.00e+0 AY.43.2
V9744 906G>T synonymous_variant N P302P 1.00e+0 AY.43.2
V2071 10511C>T missense_variant ORF1ab_pp1a P3504L 8.45e-1 AY.4.5
V2392 12620C>T missense_variant ORF1ab_pp1a T4207I 8.47e-1 AY.4.5
V7645 13623C>T synonymous_variant ORF1ab_pp1ab Y4541Y 7.58e-1 AY.4.5
V8102 17073A>G synonymous_variant ORF1ab_pp1ab T5691T 9.00e-1 AY.4.5
V8422 19542C>T synonymous_variant ORF1ab_pp1ab N6514N 7.44e-1 AY.4.5
V1782 8234C>T missense_variant ORF1ab_pp1a A2745V 7.85e-1 AY.46.2
V4127 2795G>T missense_variant S G932V 7.85e-1 AY.46.2
V5815 *4397G>T downstream_gene_variant S None 9.51e-1 AY.46.2
V6054 1344C>T synonymous_variant ORF1ab_pp1a D448D 1.00e+0 AY.46.3
V9222 607T>C synonymous_variant ORF3a L203L 9.50e-1 AY.46.5
V9222 607T>C synonymous_variant ORF3a L203L 7.07e-1 AY.46
V9304 159C>T synonymous_variant M F53F 7.07e-1 AY.50
V2368 12482C>T missense_variant ORF1ab_pp1a T4161I 8.16e-1 AY.53
V2484 13447A>G missense_variant ORF1ab_pp1ab K4483E 6.66e-1 AY.53
V8900 2049G>A synonymous_variant S R683R 8.16e-1 AY.53
V9201 399C>T synonymous_variant ORF3a C133C 8.16e-1 AY.53
V3387 20314G>T missense_variant ORF1ab_pp1ab V6772L 7.07e-1 AY.5.5
V4510 400C>T missense_variant ORF3a R134C 7.07e-1 AY.5.5
V6840 7206C>T synonymous_variant ORF1ab_pp1a D2402D 7.07e-1 AY.5.5
V1441 6136C>T missense_variant ORF1ab_pp1a P2046S 6.76e-1 AY.59
V9359 432C>T synonymous_variant M I144I 7.56e-1 AY.59
V7959 15996C>T synonymous_variant ORF1ab_pp1ab C5332C 1.00e+0 AY.62
V8671 297C>T synonymous_variant S N99N 1.00e+0 AY.62
V5486 631G>T missense_variant N A211S 6.32e-1 AY.69
V66 -63C>T upstream_gene_variant ORF1ab_pp1a None 6.80e-1 AY.6
V2730 15593C>T missense_variant ORF1ab_pp1ab T5198I 7.75e-1 AY.7.1
V5397 452C>T missense_variant N P151L 1.00e+0 AY.73
V8096 17040C>T synonymous_variant ORF1ab_pp1ab V5680V 7.07e-1 AY.73
V6113 1782T>C synonymous_variant ORF1ab_pp1a N594N 6.39e-1 AY.75
V1166 4400G>A missense_variant ORF1ab_pp1a R1467K 8.66e-1 AY.79
V1331 5452C>T missense_variant ORF1ab_pp1a H1818Y 8.66e-1 AY.79
V5508 687G>T missense_variant N Q229H 7.50e-1 AY.79
V5759 *4349C>T downstream_gene_variant S None 6.70e-1 AY.79
V8030 16566C>T synonymous_variant ORF1ab_pp1ab Y5522Y 7.50e-1 AY.79
V82 -46A>G upstream_gene_variant ORF1ab_pp1a None 8.66e-1 AY.79
V864 2912C>T missense_variant ORF1ab_pp1a P971L 8.66e-1 AY.79
V81 -47G>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 AY.85
V2218 11281A>G missense_variant ORF1ab_pp1a M3761V 6.11e-1 AY.8
V2434 13091C>T missense_variant ORF1ab_pp1a T4364I 1.00e+0 AY.8
V9180 246C>T synonymous_variant ORF3a N82N 6.11e-1 AY.8
V377 925C>T missense_variant ORF1ab_pp1a P309S 7.07e-1 AY.92
V5587 1042G>C missense_variant N D348H 7.07e-1 AY.92
V5937 558C>T synonymous_variant ORF1ab_pp1a V186V 6.12e-1 AY.92
V7511 12558C>T synonymous_variant ORF1ab_pp1a S4186S 6.12e-1 AY.92
V8160 17499T>C synonymous_variant ORF1ab_pp1ab A5833A 7.07e-1 AY.92
V5543 808G>T missense_variant N V270L 7.90e-1 AY.93
V6184 2224T>C synonymous_variant ORF1ab_pp1a L742L 8.94e-1 AY.93
V2763 15929C>T missense_variant ORF1ab_pp1ab P5310L 7.74e-1 AY.95
V3261 19609A>G missense_variant ORF1ab_pp1ab I6537V 7.74e-1 AY.95
V4116 2635G>A missense_variant S A879T 6.32e-1 AY.95
V4345 89G>T missense_variant ORF3a R30L 7.74e-1 AY.95
V3131 18634G>T missense_variant ORF1ab_pp1ab V6212F 6.76e-1 AY.98.1
V1483 6260C>T missense_variant ORF1ab_pp1a T2087I 7.06e-1 AY.99.1
V3697 542G>T missense_variant S G181V 7.59e-1 AY.99.1
V6467 4368C>T synonymous_variant ORF1ab_pp1a G1456G 8.36e-1 AY.99.1
V9028 3141T>C synonymous_variant S Y1047Y 8.28e-1 AY.99.2
V1889 8897A>G missense_variant ORF1ab_pp1a N2966S 8.65e-1 AY.99
V7598 13176G>A synonymous_variant ORF1ab_pp1a Q4392Q 8.65e-1 AY.99
V7891 15468G>T synonymous_variant ORF1ab_pp1ab V5156V 1.00e+0 AY.99
V8508 20289A>G synonymous_variant ORF1ab_pp1ab L6763L 6.65e-1 AY.99
V9616 258C>T synonymous_variant N Y86Y 8.16e-1 AY.99
V6807 6903T>C synonymous_variant ORF1ab_pp1a Y2301Y 1.00e+0 AZ.3
V123 70C>T missense_variant ORF1ab_pp1a R24C 1.00e+0 B.1.1.10
V1364 5707G>T missense_variant ORF1ab_pp1a D1903Y 1.00e+0 B.1.1.10
V4011 2025G>T missense_variant S Q675H 7.07e-1 B.1.1.10
V4443 255G>T missense_variant ORF3a L85F 1.00e+0 B.1.1.10
V7272 10603C>T synonymous_variant ORF1ab_pp1a L3535L 1.00e+0 B.1.1.10
V836 2816A>G missense_variant ORF1ab_pp1a E939G 1.00e+0 B.1.1.10
V9323 279C>T synonymous_variant M L93L 1.00e+0 B.1.1.10
V3229 19346C>T missense_variant ORF1ab_pp1ab T6449I 1.00e+0 B.1.111
V451 1204C>T missense_variant ORF1ab_pp1a R402C 1.00e+0 B.1.1.153
V5694 28C>T missense_variant ORF10 P10S 1.00e+0 B.1.1.153
V9580 105G>A synonymous_variant N A35A 7.07e-1 B.1.1.153
V1980 9731C>T missense_variant ORF1ab_pp1a S3244L 9.72e-1 B.1.1.189
V5486 631G>T missense_variant N A211S 1.00e+0 B.1.1.189
V9118 3705C>T synonymous_variant S C1235C 1.00e+0 B.1.1.189
V9328 306G>T synonymous_variant M L102L 9.80e-1 B.1.1.189
V1307 5290G>A missense_variant ORF1ab_pp1a G1764S 1.00e+0 B.1.1.214
V5192 290G>T missense_variant ORF8 S97I 7.07e-1 B.1.1.216
V4527 475C>T missense_variant ORF3a P159S 1.00e+0 B.1.1.232
V1219 4700C>T missense_variant ORF1ab_pp1a T1567I 1.00e+0 B.1.1.277
V2017 10036C>A missense_variant ORF1ab_pp1a Q3346K 1.00e+0 B.1.1.277
V342 794C>T missense_variant ORF1ab_pp1a T265I 1.00e+0 B.1.1.277
V3598 238G>T missense_variant S D80Y 1.00e+0 B.1.1.277
V3605 268G>T missense_variant S V90F 1.00e+0 B.1.1.277
V4406 171G>T missense_variant ORF3a Q57H 1.00e+0 B.1.1.277
V5670 -12C>T upstream_gene_variant ORF10 None 1.00e+0 B.1.1.277
V6511 4695G>T synonymous_variant ORF1ab_pp1a V1565V 1.00e+0 B.1.1.277
V6821 7038C>T synonymous_variant ORF1ab_pp1a I2346I 1.00e+0 B.1.1.277
V7203 10014C>T synonymous_variant ORF1ab_pp1a L3338L 1.00e+0 B.1.1.277
V844 2834C>T missense_variant ORF1ab_pp1a T945I 1.00e+0 B.1.1.277
V2810 16435C>T missense_variant ORF1ab_pp1ab R5479C 7.07e-1 B.1.1.28
V2485 13448A>G missense_variant ORF1ab_pp1ab K4483R 6.66e-1 B.1.128
V1154 4295C>T missense_variant ORF1ab_pp1a A1432V 7.07e-1 B.1.1.294
V326 671C>T missense_variant ORF1ab_pp1a T224I 7.07e-1 B.1.1.294
V3413 20498C>T missense_variant ORF1ab_pp1ab T6833I 7.07e-1 B.1.1.294
V7360 11439C>T synonymous_variant ORF1ab_pp1a Y3813Y 7.07e-1 B.1.1.294
V8275 18372G>T synonymous_variant ORF1ab_pp1ab V6124V 7.07e-1 B.1.1.294
V8466 19884C>T synonymous_variant ORF1ab_pp1ab F6628F 7.07e-1 B.1.1.294
V5222 357_358insCTG conservative_inframe_insertion ORF8 D119_F120insL 8.16e-1 B.1.1.306
V5228 361delA frameshift_variant ORF8 I121fs 6.11e-1 B.1.1.306
V6346 3354C>T synonymous_variant ORF1ab_pp1a V1118V 7.38e-1 B.1.1.306
V1932 9256C>T missense_variant ORF1ab_pp1a L3086F 6.32e-1 B.1.1.317
V406 1049C>T missense_variant ORF1ab_pp1a T350I 6.32e-1 B.1.1.317
V482 1328C>T missense_variant ORF1ab_pp1a S443F 6.32e-1 B.1.1.317
V5621 1136C>T missense_variant N T379I 6.32e-1 B.1.1.317
V7113 9435C>T synonymous_variant ORF1ab_pp1a I3145I 6.32e-1 B.1.1.317
V4400 163G>A missense_variant ORF3a V55I 7.74e-1 B.1.1.318
V8645 180C>T synonymous_variant S S60S 6.32e-1 B.1.1.318
V2634 14565G>T missense_variant ORF1ab_pp1ab M4855I 1.00e+0 B.1.1.63
V2672 15013C>T missense_variant ORF1ab_pp1ab H5005Y 8.16e-1 B.1.1.63
V2986 17713C>T missense_variant ORF1ab_pp1ab L5905F 8.16e-1 B.1.1.63
V6546 4927C>T synonymous_variant ORF1ab_pp1a L1643L 8.94e-1 B.1.1.63
V1671 7502T>C missense_variant ORF1ab_pp1a I2501T 7.48e-1 B.1.1.70
V7390 11619C>T synonymous_variant ORF1ab_pp1a L3873L 9.68e-1 B.1.1.70
V7419 11803C>T synonymous_variant ORF1ab_pp1a L3935L 7.74e-1 B.1.177.44
V4002 1983G>T missense_variant S E661D 6.29e-1 B.1.177.54
V9396 12C>T synonymous_variant ORF6 L4L 8.32e-1 B.1.177.54
V2963 17483C>T missense_variant ORF1ab_pp1ab P5828L 7.07e-1 B.1.177.82
V3073 18193C>T missense_variant ORF1ab_pp1ab P6065S 8.16e-1 B.1.177.82
V4720 8A>G missense_variant M D3G 7.55e-1 B.1.177.82
V4973 286C>T missense_variant ORF7a L96F 7.55e-1 B.1.177.82
V5150 192G>T missense_variant ORF8 E64D 7.55e-1 B.1.177.82
V823 2777C>A missense_variant ORF1ab_pp1a P926H 1.00e+0 B.1.177.82
V2040 10258G>C missense_variant ORF1ab_pp1a V3420L 7.07e-1 B.1.177.83
V5129 152C>T missense_variant ORF8 A51V 7.07e-1 B.1.177.83
V3666 459G>A missense_variant S M153I 1.00e+0 B.1.177.86
V5002 361G>T stop_gained ORF7a E121* 1.00e+0 B.1.177.86
V4350 95C>T missense_variant ORF3a T32I 8.03e-1 B.1.232
V5160 200C>T missense_variant ORF8 S67F 8.52e-1 B.1.232
V8436 19620C>T synonymous_variant ORF1ab_pp1ab Y6540Y 8.52e-1 B.1.232
V1149 4259C>T missense_variant ORF1ab_pp1a A1420V 6.12e-1 B.1.234
V7025 8715C>T synonymous_variant ORF1ab_pp1a Y2905Y 6.12e-1 B.1.234
V9832 111C>T synonymous_variant ORF10 L37L 6.12e-1 B.1.234
V1004 3427G>T missense_variant ORF1ab_pp1a V1143F 8.94e-1 B.1.239
V1606 6839C>T missense_variant ORF1ab_pp1a T2280I 7.06e-1 B.1.239
V2317 12047C>T missense_variant ORF1ab_pp1a A4016V 6.69e-1 B.1.239
V3381 20304G>T missense_variant ORF1ab_pp1ab K6768N 1.00e+0 B.1.239
V3628 412G>T missense_variant S D138Y 1.00e+0 B.1.239
V4598 670G>T missense_variant ORF3a G224C 1.00e+0 B.1.239
V5614 1129G>T missense_variant N D377Y 8.94e-1 B.1.239
V5759 *4349C>T downstream_gene_variant S None 7.06e-1 B.1.239
V6371 3609C>T synonymous_variant ORF1ab_pp1a I1203I 1.00e+0 B.1.239
V7126 9538C>T synonymous_variant ORF1ab_pp1a L3180L 7.06e-1 B.1.239
V7906 15615C>T synonymous_variant ORF1ab_pp1ab C5205C 1.00e+0 B.1.239
V5292 71C>A missense_variant N T24N 6.12e-1 B.1.240
V9141 60C>T synonymous_variant ORF3a I20I 6.32e-1 B.1.240
V6982 8397T>C synonymous_variant ORF1ab_pp1a H2799H 7.07e-1 B.1.258.11
V8185 17712C>T synonymous_variant ORF1ab_pp1ab D5904D 7.07e-1 B.1.258.11
V9169 180C>T synonymous_variant ORF3a S60S 7.07e-1 B.1.258.11
V4639 780G>T missense_variant ORF3a M260I 8.76e-1 B.1.258.17
V5200 316G>T stop_gained ORF8 E106* 8.92e-1 B.1.258
V5254 16C>A missense_variant N P6T 1.00e+0 B.1.265
V7450 12018T>C synonymous_variant ORF1ab_pp1a D4006D 7.07e-1 B.1.311
V3678 488C>T missense_variant S A163V 1.00e+0 B.1.329
V3099 18383C>T missense_variant ORF1ab_pp1ab P6128L 1.00e+0 B.1.346
V5749 *4340C>T downstream_gene_variant S None 7.07e-1 B.1.351.2
V7078 9100C>T synonymous_variant ORF1ab_pp1a L3034L 7.07e-1 B.1.351.2
V1725 7841C>T missense_variant ORF1ab_pp1a A2614V 1.00e+0 B.1.36.29
V3287 19742G>T missense_variant ORF1ab_pp1ab G6581V 7.07e-1 B.1.36.29
V1931 9245C>T missense_variant ORF1ab_pp1a T3082I 7.06e-1 B.1.36.31
V2888 16929G>T missense_variant ORF1ab_pp1ab E5643D 7.06e-1 B.1.36.31
V531 1555G>A missense_variant ORF1ab_pp1a G519S 7.06e-1 B.1.36.31
V5843 72C>T synonymous_variant ORF1ab_pp1a R24R 1.00e+0 B.1.36.31
V6454 4278C>T synonymous_variant ORF1ab_pp1a T1426T 7.06e-1 B.1.36.31
V704 2194C>T missense_variant ORF1ab_pp1a P732S 1.00e+0 B.1.36.31
V4730 67G>T missense_variant M V23L 7.74e-1 B.1.36.8
V577 1689G>T missense_variant ORF1ab_pp1a Q563H 7.74e-1 B.1.36.8
V5913 408C>T synonymous_variant ORF1ab_pp1a Y136Y 7.74e-1 B.1.36.8
V8564 20793C>T synonymous_variant ORF1ab_pp1ab D6931D 6.69e-1 B.1.36.8
V8589 20985G>T synonymous_variant ORF1ab_pp1ab V6995V 7.74e-1 B.1.36.8
V9765 987G>A synonymous_variant N T329T 6.69e-1 B.1.36.8
V2044 10339C>T missense_variant ORF1ab_pp1a P3447S 1.00e+0 B.1.396
V347 812C>T missense_variant ORF1ab_pp1a P271L 7.07e-1 B.1.396
V5397 452C>T missense_variant N P151L 1.00e+0 B.1.396
V5488 634G>A missense_variant N G212S 7.07e-1 B.1.396
V7042 8853C>T synonymous_variant ORF1ab_pp1a D2951D 1.00e+0 B.1.396
V1627 7037T>C missense_variant ORF1ab_pp1a I2346T 8.66e-1 B.1.400
V433 1139C>T missense_variant ORF1ab_pp1a P380L 1.00e+0 B.1.400
V9035 3186C>T synonymous_variant S F1062F 8.66e-1 B.1.400
V4396 157C>T missense_variant ORF3a L53F 7.44e-1 B.1.409
V8972 2637G>A synonymous_variant S A879A 7.44e-1 B.1.409
V1991 9860C>T missense_variant ORF1ab_pp1a T3287I 8.16e-1 B.1.416.1
V2340 12263C>T missense_variant ORF1ab_pp1a T4088I 7.06e-1 B.1.416.1
V8584 20955C>T synonymous_variant ORF1ab_pp1ab F6985F 8.16e-1 B.1.416.1
V8964 2568C>T synonymous_variant S N856N 6.57e-1 B.1.438.1
V4191 3310G>T missense_variant S V1104L 8.90e-1 B.1.466.2
V7516 12588C>T synonymous_variant ORF1ab_pp1a F4196F 7.98e-1 B.1.466.2
V4475 308C>T missense_variant ORF3a A103V 7.07e-1 B.1.499
V8561 20772C>T synonymous_variant ORF1ab_pp1ab L6924L 7.07e-1 B.1.499
V3895 1426G>A missense_variant S G476S 7.07e-1 B.1.560
V7821 14892T>C synonymous_variant ORF1ab_pp1ab H4964H 7.07e-1 B.1.560
V8836 1629C>T synonymous_variant S F543F 7.07e-1 B.1.560
V3156 18747C>A missense_variant ORF1ab_pp1ab D6249E 1.00e+0 B.1.565
V3454 20873A>G missense_variant ORF1ab_pp1ab K6958R 6.54e-1 B.1.565
V5583 1027G>C missense_variant N D343H 7.07e-1 B.1.575
V1610 6860C>T missense_variant ORF1ab_pp1a P2287L 1.00e+0 B.1.577
V7368 11482C>T synonymous_variant ORF1ab_pp1a L3828L 7.55e-1 B.1.582
V1620 6987G>T missense_variant ORF1ab_pp1a L2329F 1.00e+0 B.1.588
V5811 *4390C>T downstream_gene_variant S None 7.07e-1 B.1.588
V4428 207G>T missense_variant ORF3a W69C 7.07e-1 B.1.595
V2874 16861C>T missense_variant ORF1ab_pp1ab L5621F 7.66e-1 B.1.596
V9323 279C>T synonymous_variant M L93L 6.97e-1 B.1.596
V3249 19471G>T missense_variant ORF1ab_pp1ab D6491Y 1.00e+0 B.1.612
V4420 198A>T missense_variant ORF3a K66N 7.05e-1 B.1.612
V6009 999G>A synonymous_variant ORF1ab_pp1a T333T 9.08e-1 B.1.620
V1142 4190C>T missense_variant ORF1ab_pp1a A1397V 1.00e+0 B.4
V1780 8215C>T missense_variant ORF1ab_pp1a P2739S 1.00e+0 B.4
V2115 10818delG frameshift_variant ORF1ab_pp1a L3606fs 1.00e+0 B.4
V913 3068_3070delTTG disruptive_inframe_deletion ORF1ab_pp1a I1023_E1024delinsK 1.00e+0 B.4
V6379 3696C>T synonymous_variant ORF1ab_pp1a I1232I 1.00e+0 BA.1.1.10
V2437 13114G>A missense_variant ORF1ab_pp1a V4372I 1.00e+0 BA.1.1.11
V5153 194C>T missense_variant ORF8 A65V 1.00e+0 BA.1.1.11
V5289 65A>G missense_variant N D22G 7.07e-1 BA.1.1.11
V9223 612C>T synonymous_variant ORF3a H204H 1.00e+0 BA.1.1.11
V8211 17898C>T synonymous_variant ORF1ab_pp1ab D5966D 1.00e+0 BA.1.1.16
V1348 5561C>T missense_variant ORF1ab_pp1a T1854I 8.66e-1 BA.1.12
V3821 1018G>A missense_variant S E340K 7.07e-1 BA.1.15.2
V427 1120C>T missense_variant ORF1ab_pp1a H374Y 7.50e-1 BA.1.15.2
V6073 1497C>T synonymous_variant ORF1ab_pp1a F499F 7.07e-1 BA.1.15.2
V6247 2637C>T synonymous_variant ORF1ab_pp1a V879V 7.07e-1 BA.1.15.2
V9470 261C>T synonymous_variant ORF7a F87F 7.07e-1 BA.1.15.2
V740 2329C>T missense_variant ORF1ab_pp1a P777S 9.20e-1 BA.1.16
V6361 3519C>T synonymous_variant ORF1ab_pp1a V1173V 7.07e-1 BA.2.13.1
V6736 6348A>G synonymous_variant ORF1ab_pp1a V2116V 6.32e-1 BA.2.13
V9042 3219G>A synonymous_variant S K1073K 6.32e-1 BA.2.13
V1721 7825C>T missense_variant ORF1ab_pp1a L2609F 7.90e-1 BA.2.29
V8001 16311C>T synonymous_variant ORF1ab_pp1ab D5437D 7.07e-1 BA.2.29
V4840 181G>T missense_variant ORF6 D61Y 7.74e-1 BA.2.2
V5916 418C>T synonymous_variant ORF1ab_pp1a L140L 8.39e-1 BA.2.3.11
V7901 15546C>T synonymous_variant ORF1ab_pp1ab N5182N 8.39e-1 BA.2.3.11
V9446 156C>T synonymous_variant ORF7a N52N 8.78e-1 BA.2.3.11
V8814 1467C>T synonymous_variant S Y489Y 6.32e-1 BA.2.3.1
V2400 12659C>T missense_variant ORF1ab_pp1a P4220L 7.07e-1 BA.2.31
V5571 964A>G missense_variant N M322V 7.07e-1 BA.2.3.20
V6251 2679G>A synonymous_variant ORF1ab_pp1a L893L 7.07e-1 BA.2.3.20
V7200 9987C>T synonymous_variant ORF1ab_pp1a F3329F 7.07e-1 BA.2.3.20
V2537 13730C>T missense_variant ORF1ab_pp1ab A4577V 7.07e-1 BA.2.3.2
V2692 15175G>A missense_variant ORF1ab_pp1ab V5059I 7.07e-1 BA.2.3.2
V5398 454G>T missense_variant N A152S 1.00e+0 BA.2.3.2
V5897 318C>T synonymous_variant ORF1ab_pp1a V106V 7.07e-1 BA.2.3.2
V8382 19140T>C synonymous_variant ORF1ab_pp1ab H6380H 7.07e-1 BA.2.3.2
V988 3355G>T missense_variant ORF1ab_pp1a G1119C 7.07e-1 BA.2.3.2
V5975 777G>A synonymous_variant ORF1ab_pp1a L259L 1.00e+0 BA.2.40.1
V7878 15351C>T synonymous_variant ORF1ab_pp1ab H5117H 1.00e+0 BA.2.42
V1636 7121T>C missense_variant ORF1ab_pp1a M2374T 1.00e+0 BA.2.49
V272 445C>T missense_variant ORF1ab_pp1a L149F 1.00e+0 BA.2.49
V5334 136C>T missense_variant N P46S 1.00e+0 BA.2.49
V7889 15456C>T synonymous_variant ORF1ab_pp1ab D5152D 6.32e-1 BA.2.49
V1920 9166G>A missense_variant ORF1ab_pp1a V3056I 8.16e-1 BA.2.56
V568 1664C>T missense_variant ORF1ab_pp1a A555V 9.35e-1 BA.2.5
V6303 3093T>C synonymous_variant ORF1ab_pp1a Y1031Y 6.23e-1 BA.2.5
V7228 10242C>T synonymous_variant ORF1ab_pp1a N3414N 6.82e-1 BA.2.5
V2698 15266G>T missense_variant ORF1ab_pp1ab C5089F 7.07e-1 BA.2.65
V7017 8622A>G synonymous_variant ORF1ab_pp1a L2874L 7.07e-1 BA.2.65
V3255 19549C>T missense_variant ORF1ab_pp1ab P6517S 8.16e-1 BA.2.68
V9559 363C>T synonymous_variant ORF8 I121I 8.94e-1 BA.2.73
V869 2945A>G missense_variant ORF1ab_pp1a D982G 1.00e+0 BA.2.75.4
V3467 20927C>T missense_variant ORF1ab_pp1ab A6976V 7.07e-1 BA.2.7
V4719 7G>T missense_variant M D3Y 1.00e+0 BA.2.81
V5380 401C>T missense_variant N A134V 6.31e-1 BA.2.81
V5726 *4304G>T downstream_gene_variant S None 1.00e+0 BA.2.81
V5811 *4390C>T downstream_gene_variant S None 7.06e-1 BA.2.81
V9126 3762C>T synonymous_variant S C1254C 6.31e-1 BA.2.81
V4242 3595G>A missense_variant S D1199N 8.16e-1 BA.2.9.5
V5076 26T>C missense_variant ORF8 I9T 8.16e-1 BA.2.9.5
V7417 11784C>T synonymous_variant ORF1ab_pp1a N3928N 6.66e-1 BA.2.9.5
V2901 17024C>T missense_variant ORF1ab_pp1ab T5675I 7.07e-1 BA.4.1.6
V2339 12260C>T missense_variant ORF1ab_pp1a T4087I 1.00e+0 BA.4.1.8
V8292 18480C>T synonymous_variant ORF1ab_pp1ab Y6160Y 7.07e-1 BA.4.1.8
V8715 645T>C synonymous_variant S D215D 1.00e+0 BA.4.1.8
V9762 972C>T synonymous_variant N V324V 1.00e+0 BA.4.1.8
V1248 4837C>T missense_variant ORF1ab_pp1a H1613Y 1.00e+0 BA.4.5
V1800 8351C>T missense_variant ORF1ab_pp1a A2784V 1.00e+0 BA.4.5
V2583 14030G>A missense_variant ORF1ab_pp1ab R4677H 1.00e+0 BA.4.5
V6126 1854C>T synonymous_variant ORF1ab_pp1a G618G 1.00e+0 BA.4.5
V7312 11035C>T synonymous_variant ORF1ab_pp1a L3679L 1.00e+0 BA.4.5
V7465 12138C>T synonymous_variant ORF1ab_pp1a N4046N 1.00e+0 BA.4.5
V8497 20187C>T synonymous_variant ORF1ab_pp1ab N6729N 1.00e+0 BA.4.5
V9546 300G>A synonymous_variant ORF8 V100V 1.00e+0 BA.4.5
V9736 871C>T synonymous_variant N L291L 1.00e+0 BA.4.5
V3010 17867C>T missense_variant ORF1ab_pp1ab T5956I 6.32e-1 BA.4.6.4
V4965 277G>T missense_variant ORF7a V93F 8.01e-1 BA.4.6.5
V1575 6731T>C missense_variant ORF1ab_pp1a I2244T 1.00e+0 BA.4.7
V3072 18188C>T missense_variant ORF1ab_pp1ab A6063V 1.00e+0 BA.4.7
V3179 18892C>T missense_variant ORF1ab_pp1ab H6298Y 1.00e+0 BA.4.7
V6010 999G>T synonymous_variant ORF1ab_pp1a T333T 7.07e-1 BA.4.7
V6039 1233C>T synonymous_variant ORF1ab_pp1a F411F 1.00e+0 BA.4.7
V2290 11854C>T missense_variant ORF1ab_pp1a P3952S 7.07e-1 BA.5.1.12
V6216 2433T>C synonymous_variant ORF1ab_pp1a N811N 1.00e+0 BA.5.1.12
V6842 7263C>T synonymous_variant ORF1ab_pp1a V2421V 7.07e-1 BA.5.1.12
V3024 17917G>A missense_variant ORF1ab_pp1ab D5973N 1.00e+0 BA.5.1.18
V8826 1552C>T synonymous_variant S L518L 1.00e+0 BA.5.1.18
V4615 752G>A missense_variant ORF3a G251D 6.12e-1 BA.5.1.24
V2805 16358G>A missense_variant ORF1ab_pp1ab R5453K 6.69e-1 BA.5.1.3
V9511 51C>T synonymous_variant ORF8 H17H 8.68e-1 BA.5.1.3
V1969 9601C>T missense_variant ORF1ab_pp1a L3201F 7.07e-1 BA.5.1.8
V4986 314C>T missense_variant ORF7a A105V 1.00e+0 BA.5.1.8
V5136 164C>T missense_variant ORF8 A55V 1.00e+0 BA.5.1.8
V66 -63C>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 BA.5.1.8
V4154 3058G>T missense_variant S A1020S 1.00e+0 BA.5.2.13
V5550 836C>T missense_variant N P279L 1.00e+0 BA.5.2.13
V6125 1848C>T synonymous_variant ORF1ab_pp1a I616I 1.00e+0 BA.5.2.13
V5812 *4393G>T downstream_gene_variant S None 1.00e+0 BA.5.2.16
V7638 13530T>C synonymous_variant ORF1ab_pp1ab R4510R 1.00e+0 BA.5.2.16
V802 2660C>T missense_variant ORF1ab_pp1a S887F 1.00e+0 BA.5.2.16
V2368 12482C>T missense_variant ORF1ab_pp1a T4161I 7.64e-1 BA.5.2.18
V6702 6096C>T synonymous_variant ORF1ab_pp1a D2032D 9.35e-1 BA.5.2.18
V843 2834C>A missense_variant ORF1ab_pp1a T945N 9.01e-1 BA.5.2.18
V4899 133C>T missense_variant ORF7a P45S 9.26e-1 BA.5.2.22
V1371 5762C>T missense_variant ORF1ab_pp1a P1921L 1.00e+0 BA.5.2.25
V2951 17414C>T missense_variant ORF1ab_pp1ab T5805M 1.00e+0 BA.5.2.25
V3665 458T>C missense_variant S M153T 1.00e+0 BA.5.2.25
V5344 203G>A missense_variant N R68Q 1.00e+0 BA.5.2.25
V1615 6899C>T missense_variant ORF1ab_pp1a T2300I 7.07e-1 BA.5.2.27
V3656 441A>T missense_variant S K147N 7.07e-1 BA.5.2.27
V8947 2478G>T synonymous_variant S V826V 1.00e+0 BA.5.2.27
V927 3140A>G missense_variant ORF1ab_pp1a E1047G 7.07e-1 BA.5.2.27
V3697 542G>T missense_variant S G181V 1.00e+0 BA.5.2.28
V383 945G>T missense_variant ORF1ab_pp1a M315I 1.00e+0 BA.5.2.28
V8672 321T>C synonymous_variant S G107G 1.00e+0 BA.5.2.28
V310 619C>T missense_variant ORF1ab_pp1a R207C 6.32e-1 BA.5.2.2
V504 1405C>T missense_variant ORF1ab_pp1a L469F 7.07e-1 BA.5.2.31
V1421 6065C>T missense_variant ORF1ab_pp1a S2022L 8.66e-1 BA.5.2.43
V4433 221C>T missense_variant ORF3a S74F 8.66e-1 BA.5.2.43
V7407 11721C>T synonymous_variant ORF1ab_pp1a A3907A 6.70e-1 BA.5.2.43
V2012 10012C>T missense_variant ORF1ab_pp1a L3338F 1.00e+0 BA.5.2.4
V6116 1797C>T synonymous_variant ORF1ab_pp1a A599A 7.07e-1 BA.5.2.4
V8111 17154G>A synonymous_variant ORF1ab_pp1ab K5718K 1.00e+0 BA.5.2.4
V6048 1299T>C synonymous_variant ORF1ab_pp1a C433C 7.07e-1 BA.5.2.7
V9646 444C>A synonymous_variant N T148T 6.74e-1 BA.5.2.9
V213 295C>T missense_variant ORF1ab_pp1a R99C 7.07e-1 BA.5.6.2
V2371 12491C>T missense_variant ORF1ab_pp1a T4164I 7.07e-1 BA.5.6.2
V4533 497C>T missense_variant ORF3a S166L 1.00e+0 BA.5.6.2
V5663 -17C>T upstream_gene_variant ORF10 None 6.22e-1 BA.5.9
V5559 898C>T missense_variant N H300Y 7.07e-1 BE.10
V9144 69T>C synonymous_variant ORF3a A23A 7.07e-1 BE.10
V5911 387A>G synonymous_variant ORF1ab_pp1a K129K 7.07e-1 BE.2
V9205 429C>T synonymous_variant ORF3a A143A 6.32e-1 BE.3
V6190 2259A>G synonymous_variant ORF1ab_pp1a T753T 1.00e+0 BE.4
V7012 8595C>T synonymous_variant ORF1ab_pp1a V2865V 1.00e+0 BE.4
V4093 2492C>T missense_variant S A831V 1.00e+0 BE.5
V7231 10272C>T synonymous_variant ORF1ab_pp1a Y3424Y 7.07e-1 BE.5
V8265 18291C>T synonymous_variant ORF1ab_pp1ab D6097D 1.00e+0 BE.5
V8390 19212A>G synonymous_variant ORF1ab_pp1ab L6404L 7.56e-1 BF.10
V4486 329C>T missense_variant ORF3a A110V 8.16e-1 BF.14
V5454 599G>A missense_variant N G200D 1.00e+0 BF.17
V1334 5465C>T missense_variant ORF1ab_pp1a T1822I 1.00e+0 BF.18
V6655 5766C>T synonymous_variant ORF1ab_pp1a N1922N 8.16e-1 BF.18
V7345 11307C>T synonymous_variant ORF1ab_pp1a F3769F 1.00e+0 BF.18
V6306 3117C>T synonymous_variant ORF1ab_pp1a Y1039Y 6.93e-1 BF.26
V1203 4628C>T missense_variant ORF1ab_pp1a T1543I 8.16e-1 BF.28
V1862 8671G>A missense_variant ORF1ab_pp1a A2891T 8.16e-1 BF.28
V1342 5537A>G missense_variant ORF1ab_pp1a Y1846C 8.16e-1 BF.31
V8967 2580T>C synonymous_variant S V860V 1.00e+0 BF.3
V4155 3059C>T missense_variant S A1020V 7.07e-1 BF.4
V5600 1093C>T missense_variant N P365S 1.00e+0 BF.7.14
V4899 133C>T missense_variant ORF7a P45S 1.00e+0 BF.7.15
V9425 54T>C synonymous_variant ORF7a Y18Y 8.67e-1 BF.7.4
V2017 10036C>A missense_variant ORF1ab_pp1a Q3346K 8.45e-1 B
V2254 11586G>T missense_variant ORF1ab_pp1a M3862I 6.54e-1 B
V5814 *4395G>T downstream_gene_variant S None 7.14e-1 B
V6511 4695G>T synonymous_variant ORF1ab_pp1a V1565V 8.45e-1 B
V6821 7038C>T synonymous_variant ORF1ab_pp1a I2346I 7.71e-1 B
V7045 8877C>T synonymous_variant ORF1ab_pp1a G2959G 7.71e-1 B
V7055 8910A>G synonymous_variant ORF1ab_pp1a E2970E 7.71e-1 B
V7203 10014C>T synonymous_variant ORF1ab_pp1a L3338L 7.14e-1 B
V7422 11808C>T synonymous_variant ORF1ab_pp1a D3936D 7.71e-1 B
V9248 759C>T synonymous_variant ORF3a S253S 1.00e+0 BG.5
V1066 3662C>T missense_variant ORF1ab_pp1a S1221L -7.85e-1 BM.1.1.1
V1262 4918C>T missense_variant ORF1ab_pp1a P1640S -7.85e-1 BM.1.1.1
V6057 1362C>T synonymous_variant ORF1ab_pp1a L454L 6.66e-1 BM.1.1.1
V6364 3531C>T synonymous_variant ORF1ab_pp1a V1177V -7.81e-1 BM.1.1.1
V6463 4321C>T synonymous_variant ORF1ab_pp1a L1441L -6.29e-1 BM.1.1.1
V6985 8427C>T synonymous_variant ORF1ab_pp1a Y2809Y 9.45e-1 BM.1.1.1
V915 3074T>C missense_variant ORF1ab_pp1a V1025A 9.61e-1 BM.1.1.1
V1288 5141T>C missense_variant ORF1ab_pp1a I1714T 8.66e-1 BN.1.3.1
V9746 921T>C synonymous_variant N F307F 6.12e-1 BN.1.3.1
V3784 769G>A missense_variant S G257S 1.00e+0 BQ.1.10.1
V4960 268C>T stop_gained ORF7a Q90* 1.00e+0 BQ.1.1.10
V5575 976C>T missense_variant N P326S 1.00e+0 BQ.1.1.10
V666 2007G>T missense_variant ORF1ab_pp1a K669N 1.00e+0 BQ.1.1.10
V1172 4487C>T missense_variant ORF1ab_pp1a T1496I 1.00e+0 BQ.1.1.16
V2273 11771C>T missense_variant ORF1ab_pp1a A3924V 1.00e+0 BQ.1.1.16
V7551 12861G>A synonymous_variant ORF1ab_pp1a G4287G 9.53e-1 BQ.1.1.20
V1560 6596C>T missense_variant ORF1ab_pp1a A2199V 7.07e-1 BQ.1.1.22
V6689 6021C>T synonymous_variant ORF1ab_pp1a T2007T 7.07e-1 BQ.1.1.22
V4680 151C>A missense_variant E L51I 7.07e-1 BQ.1.1.23
V9363 450T>C synonymous_variant M R150R 7.07e-1 BQ.1.1.23
V9501 120T>C synonymous_variant ORF7b T40T 7.07e-1 BQ.1.1.23
V5575 976C>T missense_variant N P326S 1.00e+0 BQ.1.1.25
V666 2007G>T missense_variant ORF1ab_pp1a K669N 8.16e-1 BQ.1.1.25
V5733 *4318G>A downstream_gene_variant S None 8.16e-1 BQ.1.1.29
V5575 976C>T missense_variant N P326S 7.08e-1 BQ.1.1.32
V2413 12820G>A missense_variant ORF1ab_pp1a V4274I 1.00e+0 BQ.1.13
V2990 17735C>T missense_variant ORF1ab_pp1ab T5912I 6.12e-1 BQ.1.13
V9468 258G>A synonymous_variant ORF7a L86L 7.07e-1 BQ.1.1.5
V3601 248T>C missense_variant S V83A 7.07e-1 BQ.1.1.6
V5575 976C>T missense_variant N P326S 7.07e-1 BQ.1.18
V6655 5766C>T synonymous_variant ORF1ab_pp1a N1922N 7.25e-1 BQ.1.23
V3532 55A>C missense_variant S T19P 8.16e-1 BQ.1.25.1
V6045 1284C>T synonymous_variant ORF1ab_pp1a S428S 8.16e-1 BQ.1.25
V7471 12171T>C synonymous_variant ORF1ab_pp1a V4057V 8.16e-1 BQ.1.25
V931 3160C>T missense_variant ORF1ab_pp1a P1054S 8.16e-1 BQ.1.25
V9333 324C>T synonymous_variant M S108S 8.16e-1 BQ.1.25
V37 -115C>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 BQ.1.3
V4615 752G>A missense_variant ORF3a G251D 7.07e-1 BQ.1.3
V2099 10732G>A missense_variant ORF1ab_pp1a G3578S 7.07e-1 BQ.1.6
V4121 2675C>T missense_variant S A892V 7.07e-1 BQ.1.6
V7879 15366T>C synonymous_variant ORF1ab_pp1ab C5122C 7.07e-1 BQ.1.6
V2416 12854C>T missense_variant ORF1ab_pp1a A4285V 7.07e-1 BQ.1.8.2
V5992 903A>G synonymous_variant ORF1ab_pp1a R301R 1.00e+0 BQ.1.8.2
V8132 17286C>T synonymous_variant ORF1ab_pp1ab L5762L 7.06e-1 BR.1
V8279 18393C>T synonymous_variant ORF1ab_pp1ab T6131T 1.00e+0 BR.1
V240 360G>T missense_variant ORF1ab_pp1a K120N 1.00e+0 BR.2.1
V3091 18319G>A missense_variant ORF1ab_pp1ab V6107I 1.00e+0 BR.2.1
V6985 8427C>T synonymous_variant ORF1ab_pp1a Y2809Y 1.00e+0 BR.2.1
V7577 13023A>G synonymous_variant ORF1ab_pp1a G4341G 7.07e-1 BR.2.1
V915 3074T>C missense_variant ORF1ab_pp1a V1025A 1.00e+0 BR.2.1
V4481 319T>C missense_variant ORF3a Y107H 6.11e-1 C.35
V7125 9537G>T synonymous_variant ORF1ab_pp1a A3179A 8.16e-1 C.35
V1681 7585G>A missense_variant ORF1ab_pp1a A2529T 1.00e+0 C.36.3
V1400 5990C>T missense_variant ORF1ab_pp1a A1997V 7.07e-1 C.36
V3304 19838G>T missense_variant ORF1ab_pp1ab S6613I 7.07e-1 C.36
V601 1770G>T missense_variant ORF1ab_pp1a L590F 7.07e-1 C.36
V6577 5127C>T synonymous_variant ORF1ab_pp1a N1709N 7.07e-1 C.36
V8171 17583G>A synonymous_variant ORF1ab_pp1ab Q5861Q 8.16e-1 CH.1.1.1
V240 360G>T missense_variant ORF1ab_pp1a K120N 1.00e+0 CJ.1
V4556 545A>G missense_variant ORF3a H182R 7.07e-1 CJ.1
V4564 578G>T missense_variant ORF3a W193L 7.07e-1 CJ.1
V6985 8427C>T synonymous_variant ORF1ab_pp1a Y2809Y 1.00e+0 CJ.1
V7368 11482C>T synonymous_variant ORF1ab_pp1a L3828L 7.07e-1 CJ.1
V760 2441C>T missense_variant ORF1ab_pp1a T814I 7.07e-1 CJ.1
V7975 16122C>T synonymous_variant ORF1ab_pp1ab C5374C 7.07e-1 CJ.1
V915 3074T>C missense_variant ORF1ab_pp1a V1025A 8.16e-1 CJ.1
V9296 84C>T synonymous_variant M F28F 7.07e-1 CJ.1
V6362 3522C>T synonymous_variant ORF1ab_pp1a Y1174Y 7.06e-1 CN.1
V7438 11898G>A synonymous_variant ORF1ab_pp1a Q3966Q 8.66e-1 CN.1
V2308 11977C>T missense_variant ORF1ab_pp1a R3993C 7.07e-1 DF.1
V4263 3682G>T missense_variant S V1228L 7.07e-1 DF.1
V2142 10956G>T missense_variant ORF1ab_pp1a M3652I 1.00e+0 DN.1
V4717 5C>T missense_variant M A2V 1.00e+0 DU.1
V128 79C>T missense_variant ORF1ab_pp1a L27F 1.00e+0 N.5
V56 -77G>A upstream_gene_variant ORF1ab_pp1a None 1.00e+0 N.5
V6891 7680C>T synonymous_variant ORF1ab_pp1a Y2560Y 1.00e+0 N.5
V7970 16098C>T synonymous_variant ORF1ab_pp1ab V5366V 7.07e-1 N.5
V8711 624G>T synonymous_variant S T208T 1.00e+0 N.5
V1684 7595C>T missense_variant ORF1ab_pp1a T2532I 1.00e+0 P.1.12
V1765 8087C>T missense_variant ORF1ab_pp1a A2696V 1.00e+0 P.1.12
V3521 16G>T missense_variant S V6F 1.00e+0 P.1.12
V4426 203G>T missense_variant ORF3a R68I 1.00e+0 P.1.12
V5873 219T>C synonymous_variant ORF1ab_pp1a R73R 1.00e+0 P.1.12
V5940 567C>T synonymous_variant ORF1ab_pp1a N189N 1.00e+0 P.1.12
V9681 603C>T synonymous_variant N S201S 1.00e+0 P.1.12
V3638 432_434delTTA disruptive_inframe_deletion S Y145del 6.29e-1 P.1.14
V1445 6143C>T missense_variant ORF1ab_pp1a S2048F 7.07e-1 P.1.15
V4858 28A>G missense_variant ORF7a I10V 8.25e-1 P.1.17
V6145 1980C>T synonymous_variant ORF1ab_pp1a V660V 8.23e-1 P.1.17
V8563 20790C>T synonymous_variant ORF1ab_pp1ab Y6930Y 9.75e-1 P.1.17
V8645 180C>T synonymous_variant S S60S 9.29e-1 P.1.17
V3711 556T>C missense_variant S F186L 1.00e+0 P.1.2
V7550 12850C>T synonymous_variant ORF1ab_pp1a L4284L 1.00e+0 P.1.7.1
V1371 5762C>T missense_variant ORF1ab_pp1a P1921L 8.29e-1 P.1.7
V6019 1077C>T synonymous_variant ORF1ab_pp1a Y359Y 1.00e+0 P.1.7
V8823 1524C>T synonymous_variant S Y508Y 6.26e-1 P.1.7
V6282 2904T>C synonymous_variant ORF1ab_pp1a A968A 1.00e+0 Q.3
V3212 19150G>T missense_variant ORF1ab_pp1ab V6384L 1.00e+0 Q.4
V7654 13701C>T synonymous_variant ORF1ab_pp1ab Y4567Y 8.66e-1 XBB.1.2
V5419 535G>T missense_variant N G179C 1.00e+0 XBB.1.4.1
V860 2905C>T missense_variant ORF1ab_pp1a L969F 1.00e+0 XBB.1.4.1
V3081 18247C>T missense_variant ORF1ab_pp1ab P6083S 6.30e-1 XBB.1
V1114 3919G>A missense_variant ORF1ab_pp1a G1307S 8.47e-1 XBF
V2037 10184C>A missense_variant ORF1ab_pp1a P3395H 7.83e-1 XBF
V240 360G>T missense_variant ORF1ab_pp1a K120N 8.36e-1 XBF
V2694 15187G>A missense_variant ORF1ab_pp1ab G5063S 7.13e-1 XBF
V2918 17146C>T missense_variant ORF1ab_pp1ab R5716C 8.98e-1 XBF
V3675 471C>A missense_variant S F157L 6.29e-1 XBF
V3724 628A>G missense_variant S I210V 6.69e-1 XBF
V3735 638T>G missense_variant S V213G 6.67e-1 XBF
V3784 769G>A missense_variant S G257S 7.46e-1 XBF
V3818 1015G>C missense_variant S G339R 7.70e-1 XBF
V3820 1016G>A missense_variant S G339D 7.77e-1 XBF
V3824 1037G>C missense_variant S R346T 7.56e-1 XBF
V3840 1112C>T missense_variant S S371F 7.29e-1 XBF
V3841 1117T>C missense_variant S S373P 7.14e-1 XBF
V3843 1124C>T missense_variant S S375F 7.09e-1 XBF
V3844 1126A>G missense_variant S T376A 7.11e-1 XBF
V3851 1213G>A missense_variant S D405N 6.74e-1 XBF
V3854 1224A>C missense_variant S R408S 6.42e-1 XBF
V3861 1251G>T missense_variant S K417N 6.36e-1 XBF
V4144 2862A>T missense_variant S Q954H 8.80e-1 XBF
V4146 2907T>A missense_variant S N969K 8.98e-1 XBF
V4729 55C>G missense_variant M Q19E 6.01e-1 XBF
V5241 -3A>T upstream_gene_variant N None 7.59e-1 XBF
V5651 1237A>C missense_variant N S413R 6.81e-1 XBF
V7193 9933C>T synonymous_variant ORF1ab_pp1a D3311D 7.39e-1 XBF
V7219 10182G>A synonymous_variant ORF1ab_pp1a R3394R 7.83e-1 XBF
V7888 15450C>T synonymous_variant ORF1ab_pp1ab L5150L 8.54e-1 XBF
V9076 3438C>T synonymous_variant S D1146D 8.21e-1 XBF
V915 3074T>C missense_variant ORF1ab_pp1a V1025A 8.42e-1 XBF
V9496 52C>T synonymous_variant ORF7b L18L 6.61e-1 XBF
V3434 20727G>T missense_variant ORF1ab_pp1ab L6909F 6.67e-1 XB
V4169 3209C>T missense_variant S A1070V 6.67e-1 XB
V4972 283G>T stop_gained ORF7a E95* 7.71e-1 XB
V5629 1152G>T missense_variant N Q384H 7.14e-1 XB
V9227 630C>T synonymous_variant ORF3a D210D 1.00e+0 A.21
V7861 15216C>T synonymous_variant ORF1ab_pp1ab T5072T 6.50e-1 AH.3
V6463 4321C>T synonymous_variant ORF1ab_pp1a L1441L 7.06e-1 AL.1
V8053 16740C>T synonymous_variant ORF1ab_pp1ab L5580L 7.06e-1 AL.1
V8642 165C>T synonymous_variant S F55F 1.00e+0 AL.1
V2707 15349C>T missense_variant ORF1ab_pp1ab H5117Y 7.06e-1 AY.4.1
V6240 2592C>T synonymous_variant ORF1ab_pp1a L864L 1.00e+0 AY.5.2
V9120 3714C>T synonymous_variant S T1238T 1.00e+0 AY.56
V9358 429G>T synonymous_variant M V143V 1.00e+0 AY.56
V2741 15664C>T missense_variant ORF1ab_pp1ab P5222S 1.00e+0 B.1.1.117
V2779 16112C>T missense_variant ORF1ab_pp1ab P5371L 1.00e+0 B.1.1.265
V3741 643G>T missense_variant S D215Y 1.00e+0 B.1.1.265
V7826 14946A>G synonymous_variant ORF1ab_pp1ab G4982G 7.06e-1 B.1.1.265
V1138 4157G>A missense_variant ORF1ab_pp1a R1386H 1.00e+0 B.1.1.27
V161 178G>A missense_variant ORF1ab_pp1a V60I 1.00e+0 B.1.1.27
V5855 111G>A synonymous_variant ORF1ab_pp1a E37E 1.00e+0 B.1.1.27
V6064 1419C>T synonymous_variant ORF1ab_pp1a I473I 9.23e-1 B.1.1.27
V8834 1623C>T synonymous_variant S F541F 1.00e+0 B.1.1.27
V9121 3720C>T synonymous_variant S C1240C 1.00e+0 B.1.1.27
V1286 5123C>A missense_variant ORF1ab_pp1a A1708D 1.00e+0 B.1.1.315
V3275 19697C>T missense_variant ORF1ab_pp1ab T6566M 1.00e+0 B.1.1.315
V3578 204_209delACATGT disruptive_inframe_deletion S H69_V70del 1.00e+0 B.1.1.315
V4011 2025G>T missense_variant S Q675H 1.00e+0 B.1.1.315
V5114 112C>T missense_variant ORF8 P38S 1.00e+0 B.1.1.315
V5529 740C>T missense_variant N T247I 1.00e+0 B.1.1.315
V5955 655C>T synonymous_variant ORF1ab_pp1a L219L 1.00e+0 B.1.1.315
V66 -63C>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 B.1.1.315
V6651 5721C>T synonymous_variant ORF1ab_pp1a F1907F 1.00e+0 B.1.1.315
V6940 8028C>T synonymous_variant ORF1ab_pp1a T2676T 1.00e+0 B.1.1.315
V7984 16164C>T synonymous_variant ORF1ab_pp1ab Y5388Y 1.00e+0 B.1.1.315
V1046 3610G>A missense_variant ORF1ab_pp1a A1204T 1.00e+0 B.1.1.325
V2922 17180C>T missense_variant ORF1ab_pp1ab A5727V 1.00e+0 B.1.1.325
V3121 18562G>T missense_variant ORF1ab_pp1ab V6188F 1.00e+0 B.1.1.325
V3858 1240C>A missense_variant S Q414K 1.00e+0 B.1.1.325
V4199 3352G>C missense_variant S D1118H 1.00e+0 B.1.1.337
V9056 3282C>T synonymous_variant S V1094V 1.00e+0 B.1.1.337
V301 577C>T missense_variant ORF1ab_pp1a P193S 7.70e-1 B.1.1.389
V6950 8088G>T synonymous_variant ORF1ab_pp1a A2696A 7.70e-1 B.1.1.389
V1004 3427G>T missense_variant ORF1ab_pp1a V1143F 7.06e-1 B.1.1.398
V2295 11894A>G missense_variant ORF1ab_pp1a E3965G 7.06e-1 B.1.1.398
V2559 13919C>T missense_variant ORF1ab_pp1ab T4640I 7.06e-1 B.1.1.398
V4577 628G>T missense_variant ORF3a D210Y 7.06e-1 B.1.1.398
V4652 817G>T missense_variant ORF3a V273L 7.06e-1 B.1.1.398
V5891 276C>T synonymous_variant ORF1ab_pp1a L92L 7.06e-1 B.1.1.398
V6637 5613C>T synonymous_variant ORF1ab_pp1a N1871N 7.06e-1 B.1.1.398
V9545 285G>A synonymous_variant ORF8 L95L 7.06e-1 B.1.1.398
V5461 608G>A missense_variant N R203K -7.04e-1 B.1.1.419
V5465 610G>C missense_variant N G204R -7.04e-1 B.1.1.419
V9682 609G>A synonymous_variant N R203R -7.04e-1 B.1.1.419
V2595 14144C>T missense_variant ORF1ab_pp1ab P4715L -1.00e+0 B.1.1.487
V8946 2472C>T synonymous_variant S N824N 7.04e-1 B.1.1.487
V3492 21100C>T missense_variant ORF1ab_pp1ab P7034S 1.00e+0 B.1.1.48
V5576 980C>T missense_variant N S327L 1.00e+0 B.1.1.48
V8370 19005C>T synonymous_variant ORF1ab_pp1ab N6335N 7.04e-1 B.1.166
V9463 237C>T synonymous_variant ORF7a A79A 7.06e-1 B.1.336
V5267 32A>G missense_variant N N11S 1.00e+0 B.1.337
V2422 12923T>C missense_variant ORF1ab_pp1a I4308T 8.13e-1 B.1.36.19
V6237 2577C>T synonymous_variant ORF1ab_pp1a A859A 1.00e+0 B.1.36.19
V906 3052C>T missense_variant ORF1ab_pp1a P1018S 1.00e+0 B.1.36.19
V1483 6260C>T missense_variant ORF1ab_pp1a T2087I 1.00e+0 B.1.393
V1982 9764C>T missense_variant ORF1ab_pp1a T3255I 1.00e+0 B.1.393
V2338 12254A>G missense_variant ORF1ab_pp1a D4085G 6.98e-1 B.1.393
V2590 14107G>T missense_variant ORF1ab_pp1ab A4703S 1.00e+0 B.1.393
V2900 17021C>T missense_variant ORF1ab_pp1ab S5674L 1.00e+0 B.1.393
V2964 17485G>T missense_variant ORF1ab_pp1ab A5829S 1.00e+0 B.1.393
V32 -126C>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 B.1.393
V4056 2194A>T missense_variant S T732S 6.98e-1 B.1.393
V4461 295G>A missense_variant ORF3a A99T 1.00e+0 B.1.393
V4546 524C>T missense_variant ORF3a T175I 1.00e+0 B.1.393
V5018 35G>A missense_variant ORF7b C12Y 1.00e+0 B.1.393
V5628 1148C>T missense_variant N P383L 1.00e+0 B.1.393
V5790 *4367G>T downstream_gene_variant S None 1.00e+0 B.1.393
V6517 4734C>T synonymous_variant ORF1ab_pp1a N1578N 1.00e+0 B.1.393
V8647 195C>T synonymous_variant S F65F 6.98e-1 B.1.393
V1832 8537C>T missense_variant ORF1ab_pp1a T2846I 1.00e+0 B.1.433
V7894 15499C>T synonymous_variant ORF1ab_pp1ab L5167L 1.00e+0 B.1.433
V346 811C>T missense_variant ORF1ab_pp1a P271S 8.15e-1 B.1.453
V1211 4652T>C missense_variant ORF1ab_pp1a I1551T 1.00e+0 B.1.530
V4653 825G>T missense_variant ORF3a L275F 1.00e+0 B.1.530
V5228 361delA frameshift_variant ORF8 I121fs 1.00e+0 B.1.530
V6591 5247C>T synonymous_variant ORF1ab_pp1a N1749N 1.00e+0 B.1.530
V7103 9300C>T synonymous_variant ORF1ab_pp1a F3100F 1.00e+0 B.1.530
V8096 17040C>T synonymous_variant ORF1ab_pp1ab V5680V 7.04e-1 B.1.530
V8207 17868T>C synonymous_variant ORF1ab_pp1ab T5956T 1.00e+0 B.1.530
V8799 1296C>T synonymous_variant S C432C 1.00e+0 B.1.530
V9296 84C>T synonymous_variant M F28F 1.00e+0 B.1.530
V9368 480C>T synonymous_variant M D160D 1.00e+0 B.1.546
V9783 1080C>T synonymous_variant N Y360Y 1.00e+0 B.1.546
V1278 5045C>T missense_variant ORF1ab_pp1a T1682I 9.24e-1 B.1.602
V6116 1797C>T synonymous_variant ORF1ab_pp1a A599A 1.00e+0 B.1.602
V6830 7128G>T synonymous_variant ORF1ab_pp1a P2376P 8.52e-1 B.1.602
V6978 8361C>T synonymous_variant ORF1ab_pp1a F2787F 9.80e-1 B.1.602
V7195 9942C>T synonymous_variant ORF1ab_pp1a N3314N 9.90e-1 B.1.602
V9351 396G>T synonymous_variant M P132P 1.00e+0 B.1.602
V1849 8615C>T missense_variant ORF1ab_pp1a T2872M 7.03e-1 B.52
V3563 145C>T missense_variant S H49Y 1.00e+0 B.52
V3896 1430G>A missense_variant S S477N 7.03e-1 B.52
V3997 1963C>T missense_variant S H655Y 7.03e-1 B.52
V4018 2037T>A missense_variant S N679K 1.00e+0 B.52
V4438 232C>T missense_variant ORF3a H78Y 1.00e+0 B.52
V4760 245T>C missense_variant M I82T 1.00e+0 B.52
V5241 -3A>T upstream_gene_variant N None 1.00e+0 B.52
V7328 11151C>T synonymous_variant ORF1ab_pp1a L3717L 7.03e-1 B.52
V9323 279C>T synonymous_variant M L93L 1.00e+0 B.52
V7232 10278C>T synonymous_variant ORF1ab_pp1a H3426H 1.00e+0 BA.2.17
V605 1786G>A missense_variant ORF1ab_pp1a V596I 1.00e+0 BA.4.1.3
V831 2800G>A missense_variant ORF1ab_pp1a G934S 1.00e+0 BA.4.1.3
V8466 19884C>T synonymous_variant ORF1ab_pp1ab F6628F 1.00e+0 BA.4.1.3
V9151 102G>T synonymous_variant ORF3a T34T 1.00e+0 BA.4.1.3
V1064 3659C>T missense_variant ORF1ab_pp1a P1220L 1.00e+0 BC.2
V2976 17561C>T missense_variant ORF1ab_pp1ab T5854I 1.00e+0 BC.2
V3247 19459G>T missense_variant ORF1ab_pp1ab V6487F 1.00e+0 BC.2
V4682 164C>T missense_variant E S55F 1.00e+0 BC.2
V4742 187G>A missense_variant M A63T -7.04e-1 BC.2
V5130 155G>A missense_variant ORF8 R52K 1.00e+0 BC.2
V6132 1878C>T synonymous_variant ORF1ab_pp1a P626P 1.00e+0 BC.2
V7070 9033C>T synonymous_variant ORF1ab_pp1a Y3011Y 1.00e+0 BC.2
V7406 11718A>G synonymous_variant ORF1ab_pp1a E3906E 1.00e+0 BC.2
V858 2897C>T missense_variant ORF1ab_pp1a S966F 1.00e+0 BC.2
V8866 1860C>T synonymous_variant S V620V 1.00e+0 BC.2
V6498 4620T>C synonymous_variant ORF1ab_pp1a N1540N 1.00e+0 BE.4.2
V1114 3919G>A missense_variant ORF1ab_pp1a G1307S 7.06e-1 BG.1
V249 405T>G missense_variant ORF1ab_pp1a S135R 7.06e-1 BG.1
V3823 1037G>A missense_variant S R346K -7.06e-1 BG.1
V4720 8A>G missense_variant M D3G -7.06e-1 BG.1
V6265 2772C>T synonymous_variant ORF1ab_pp1a F924F 7.06e-1 BG.1
V6869 7500C>T synonymous_variant ORF1ab_pp1a S2500S -7.06e-1 BG.1
V7219 10182G>A synonymous_variant ORF1ab_pp1a R3394R 7.06e-1 BG.1
V7888 15450C>T synonymous_variant ORF1ab_pp1ab L5150L 7.06e-1 BG.1
V1260 4913C>T missense_variant ORF1ab_pp1a T1638I 7.01e-1 BM.2.1
V1262 4918C>T missense_variant ORF1ab_pp1a P1640S -6.15e-1 BM.2.1
V240 360G>T missense_variant ORF1ab_pp1a K120N 8.90e-1 BM.2.1
V301 577C>T missense_variant ORF1ab_pp1a P193S 7.01e-1 BM.2.1
V349 820G>A missense_variant ORF1ab_pp1a V274I 7.01e-1 BM.2.1
V6001 939C>T synonymous_variant ORF1ab_pp1a N313N 7.01e-1 BM.2.1
V6057 1362C>T synonymous_variant ORF1ab_pp1a L454L 8.90e-1 BM.2.1
V6271 2802T>C synonymous_variant ORF1ab_pp1a G934G 7.01e-1 BM.2.1
V6985 8427C>T synonymous_variant ORF1ab_pp1a Y2809Y 1.00e+0 BM.2.1
V915 3074T>C missense_variant ORF1ab_pp1a V1025A 1.00e+0 BM.2.1
V240 360G>T missense_variant ORF1ab_pp1a K120N 1.00e+0 BM.2
V6057 1362C>T synonymous_variant ORF1ab_pp1a L454L 7.58e-1 BM.2
V6985 8427C>T synonymous_variant ORF1ab_pp1a Y2809Y 1.00e+0 BM.2
V915 3074T>C missense_variant ORF1ab_pp1a V1025A 1.00e+0 BM.2
V2625 14491C>T missense_variant ORF1ab_pp1ab H4831Y 1.00e+0 BN.1.8
V9304 159C>T synonymous_variant M F53F 7.06e-1 BN.1.8
V2120 10844C>T missense_variant ORF1ab_pp1a A3615V 1.00e+0 BU.3
V8671 297C>T synonymous_variant S N99N 1.00e+0 BU.3
V9030 3153C>T synonymous_variant S S1051S 7.06e-1 BV.1
V9396 12C>T synonymous_variant ORF6 L4L 7.06e-1 BV.1
V4854 22G>A missense_variant ORF7a A8T 8.12e-1 C.11
V7345 11307C>T synonymous_variant ORF1ab_pp1a F3769F 7.66e-1 C.11
V8451 19752C>T synonymous_variant ORF1ab_pp1ab D6584D 8.12e-1 C.11
V147 133C>T missense_variant ORF1ab_pp1a H45Y 1.00e+0 C.1
V5916 418C>T synonymous_variant ORF1ab_pp1a L140L 7.06e-1 C.1
V3797 790G>T missense_variant S A264S 6.97e-1 C.26
V5628 1148C>T missense_variant N P383L 6.01e-1 C.26
V57 -77G>T upstream_gene_variant ORF1ab_pp1a None 9.32e-1 C.26
V5870 210C>T synonymous_variant ORF1ab_pp1a F70F 9.32e-1 C.26
V6495 4605A>G synonymous_variant ORF1ab_pp1a V1535V 6.97e-1 C.26
V9060 3342C>T synonymous_variant S I1114I 9.32e-1 C.26
V1371 5762C>T missense_variant ORF1ab_pp1a P1921L 7.04e-1 CC.1
V4211 3415G>T missense_variant S D1139Y 7.04e-1 CC.1
V4860 32C>T missense_variant ORF7a T11I 7.04e-1 CC.1
V6944 8058T>C synonymous_variant ORF1ab_pp1a R2686R 7.04e-1 CC.1
V1250 4877C>T missense_variant ORF1ab_pp1a T1626I 1.00e+0 CP.3
V1490 6274C>T missense_variant ORF1ab_pp1a H2092Y 1.00e+0 CP.3
V2368 12482C>T missense_variant ORF1ab_pp1a T4161I 1.00e+0 CP.3
V7250 10431T>C synonymous_variant ORF1ab_pp1a N3477N 1.00e+0 CP.3
V742 2335G>A missense_variant ORF1ab_pp1a V779I 1.00e+0 CP.3
V7622 13356C>T synonymous_variant ORF1ab_pp1ab D4452D 1.00e+0 CP.3
V7840 15060C>T synonymous_variant ORF1ab_pp1ab N5020N 1.00e+0 CP.3
V9198 336C>T synonymous_variant ORF3a V112V 1.00e+0 CP.3
V9213 504C>T synonymous_variant ORF3a V168V 1.00e+0 CP.3
V4827 134C>T missense_variant ORF6 T45I 1.00e+0 P.7
V688 2123C>T missense_variant ORF1ab_pp1a T708I 7.06e-1 P.7
V9631 378C>T synonymous_variant N N126N 7.06e-1 P.7
V6028 1161C>T synonymous_variant ORF1ab_pp1a Y387Y 1.00e+0 XAN
V9185 279C>T synonymous_variant ORF3a H93H 8.14e-1 XBC.1.1
V4098 2524G>A missense_variant S G842S 1.00e+0 XJ
V5762 *4350G>T downstream_gene_variant S None 1.00e+0 XJ





Manual curation of mutation (5805C>T)-related literature from PubMed

The pubmed.mineR and pubmed-mapper were utilized for extracting literature from PubMed, followed by manual filtering.
Note: PubMed: (COVID-19 [Title/Abstract] OR SARS-COV-2 [Title/Abstract]) AND (DNA mutation [Title/Abstract] OR Protein mutation-1 letter [Title/Abstract] OR Protein mutation-3 letter [Title/Abstract]).

DNA level Protein level Paper title Journal name Publication year Pubmed ID