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The current mutation

ID: V6730
DNA: 6276C>T
Protein: H2092H
Position: 6541








COV2Var annotation categories







Summary information of mutation (6276C>T)

Basic Information about Mutation.

  Gene Information   Gene ID   GU280_gp01_pp1a
  Gene Name   ORF1ab_pp1a
  Gene Type   protein_coding
  Genome position   6541
  Reference genome   GenBank ID: NC_045512.2
  Mutation type   synonymous_variant
  DNA Level   DNA Mutation: 6276C>T
  Ref Seq: C
  Mut Seq: T
  Protein Level   Protein 1-letter Mutation: H2092H
  Protein 3-letter Mutation: His2092His

Overview of the genomic positions of Mutation.
Note: The annotated 12 genes were retrieved from GeneBank (Accession: NC_045512.2). "MP" represents genomic position of mutation.





Analyzing the distribution of mutation (6276C>T) across geographic regions, temporal trends, and lineages

The count of genome sequences harboring this mutation and its distribution across global regions offer insights into regional variations.
Note: The distribution of mutation across 218 geographical regions. Color representation of genome sequence counts. The data is obtained from GISAID's metadata, specifically capturing the regional distribution of genomic sequences.



The dynamic count of genome sequences containing this mutation over time.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to the respective month. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.



For every time point represented in the graph above, identifying the top 3 lineages with the highest count of genome sequences carrying this mutation aids in pinpointing noteworthy lineages for further analysis.
Note: Users can filter the lineages by entering a "Year-Month" term in the search box. For example, entering 2020-01 will display lineages that appeared in January 2020. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.

Collection date Lineage Total lineage monthly counts Lineage-specific monthly counts Lineage-specific monthly frequency
2020-10 B.1.426 207 92 4.44e-1
2020-10 B.1.1.28 207 26 1.26e-1
2020-10 B.1.160 207 26 1.26e-1
2020-11 B.1.160 286 80 2.80e-1
2020-11 B.1.234 286 40 1.40e-1
2020-11 B.1.426 286 31 1.08e-1
2020-12 B.1.160 473 161 3.40e-1
2020-12 B.1 473 40 8.46e-2
2020-12 B.1.1.214 473 40 8.46e-2
2020-03 B.1 11 5 4.55e-1
2020-03 B.1.1 11 2 1.82e-1
2020-03 B.45 11 2 1.82e-1
2020-04 B.1.426 41 18 4.39e-1
2020-04 B.1.1 41 8 1.95e-1
2020-04 B.1 41 5 1.22e-1
2020-05 B.1.426 347 326 9.39e-1
2020-05 B.1.1 347 7 2.02e-2
2020-05 B.1 347 5 1.44e-2
2020-06 B.1.426 137 76 5.55e-1
2020-06 B.1.1.155 137 28 2.04e-1
2020-06 A.19 137 6 4.38e-2
2020-07 B.1.426 107 59 5.51e-1
2020-07 B.1.36.8 107 13 1.21e-1
2020-07 B.1.369 107 9 8.41e-2
2020-08 B.1.426 345 238 6.90e-1
2020-08 B.1.36.8 345 80 2.32e-1
2020-08 B.1 345 5 1.45e-2
2020-09 B.1.426 183 83 4.54e-1
2020-09 B.1.1.10 183 56 3.06e-1
2020-09 B.1.36.8 183 8 4.37e-2
2021-01 B.1.160 698 245 3.51e-1
2021-01 A.28 698 64 9.17e-2
2021-01 B.1.2 698 53 7.59e-2
2021-10 AY.103 1035 171 1.65e-1
2021-10 AY.4 1035 102 9.86e-2
2021-10 AY.25 1035 101 9.76e-2
2021-11 AY.103 1623 222 1.37e-1
2021-11 AY.4 1623 149 9.18e-2
2021-11 AY.44 1623 134 8.26e-2
2021-12 AY.103 1480 153 1.03e-1
2021-12 AY.20 1480 115 7.77e-2
2021-12 AY.39 1480 112 7.57e-2
2021-02 A.28 598 132 2.21e-1
2021-02 B.1.1.7 598 110 1.84e-1
2021-02 B.1.160 598 63 1.05e-1
2021-03 B.1.1.7 1024 331 3.23e-1
2021-03 P.1 1024 222 2.17e-1
2021-03 B.1.1.519 1024 165 1.61e-1
2021-04 P.1 2095 1443 6.89e-1
2021-04 B.1.1.7 2095 290 1.38e-1
2021-04 B.1.1.519 2095 90 4.30e-2
2021-05 P.1 1563 1084 6.94e-1
2021-05 B.1.1.7 1563 320 2.05e-1
2021-05 A.28 1563 30 1.92e-2
2021-06 P.1 615 349 5.67e-1
2021-06 AY.4 615 94 1.53e-1
2021-06 B.1.1.7 615 69 1.12e-1
2021-07 AY.4 590 183 3.10e-1
2021-07 P.1 590 136 2.31e-1
2021-07 AY.25 590 43 7.29e-2
2021-08 AY.25 945 217 2.30e-1
2021-08 P.1 945 88 9.31e-2
2021-08 AY.4 945 87 9.21e-2
2021-09 AY.25 1119 213 1.90e-1
2021-09 AY.103 1119 180 1.61e-1
2021-09 AY.4 1119 98 8.76e-2
2022-01 BA.1.1 791 244 3.08e-1
2022-01 BA.1 791 85 1.07e-1
2022-01 BA.1.15 791 59 7.46e-2
2022-10 BQ.1.1.18 1095 817 7.46e-1
2022-10 BF.7 1095 51 4.66e-2
2022-10 BA.5.1.1 1095 24 2.19e-2
2022-11 BQ.1.1.18 3147 2893 9.19e-1
2022-11 BF.7 3147 56 1.78e-2
2022-11 BN.1.3 3147 25 7.94e-3
2022-12 BQ.1.1.18 5202 5019 9.65e-1
2022-12 BF.7 5202 33 6.34e-3
2022-12 BN.1.3 5202 20 3.84e-3
2022-02 BA.1.1 687 260 3.78e-1
2022-02 BA.2 687 138 2.01e-1
2022-02 BA.1 687 89 1.30e-1
2022-03 BA.2 677 424 6.26e-1
2022-03 BA.1.1 677 106 1.57e-1
2022-03 BA.2.9 677 34 5.02e-2
2022-04 BA.2 634 499 7.87e-1
2022-04 BA.2.3 634 34 5.36e-2
2022-04 BA.2.9 634 30 4.73e-2
2022-05 BA.2 475 310 6.53e-1
2022-05 BA.2.9 475 52 1.09e-1
2022-05 BA.2.3 475 20 4.21e-2
2022-06 BA.2 280 74 2.64e-1
2022-06 BA.2.2 280 59 2.11e-1
2022-06 BA.4 280 30 1.07e-1
2022-07 BA.4 235 44 1.87e-1
2022-07 BA.5.5 235 36 1.53e-1
2022-07 BA.5.2.20 235 15 6.38e-2
2022-08 BA.5.6 186 24 1.29e-1
2022-08 BA.4 186 16 8.60e-2
2022-08 BF.10 186 15 8.06e-2
2022-09 BQ.1.1.18 285 73 2.56e-1
2022-09 BA.5.6 285 28 9.82e-2
2022-09 BA.4.6 285 23 8.07e-2
2023-01 BQ.1.1.18 3286 3124 9.51e-1
2023-01 BF.7 3286 20 6.09e-3
2023-01 BQ.1.1.31 3286 20 6.09e-3
2023-02 BQ.1.1.18 510 476 9.33e-1
2023-02 XBB.1.5 510 14 2.75e-2
2023-02 XBB.1.9.1 510 4 7.84e-3

The count of genome sequences and the frequency of this mutation in each lineage.
Note: Displaying mutation frequencies (>0.01) among 2,735 lineages. Mutation Count represents the count of sequences carrying this mutation. Users can filter the lineages by entering a search term in the search box. For example, entering "A.1" will display A.1 lineages. The data is obtained from GISAID's metadata, specifically capturing the lineage of genomic sequences. Mutation count: Count of sequences carrying this mutation.

Mutation ID Lineage Mutation frequency Mutation count Earliest lineage emergence Latest lineage emergence
V6730 AY.46.5 1.00e-2 112 2021-2-6 2022-2-3
V6730 B.1.1.519 1.39e-2 349 2020-8-28 2022-9-27
V6730 B.1.160 2.25e-2 625 2020-2-2 2022-5-21
V6730 BQ.1.1.18 5.97e-1 12408 2021-12-28 2023-2-23
V6730 AY.20 1.39e-2 494 2020-9-22 2022-10-26
V6730 AU.3 8.33e-2 46 2021-2-9 2021-7-19
V6730 AY.108 2.47e-2 17 2021-5-12 2022-10-26
V6730 AY.17 1.60e-2 12 2021-3-6 2022-5-26
V6730 AY.41 1.20e-2 53 2020-10-20 2022-2-4
V6730 AY.4.3 2.14e-2 47 2021-5-30 2022-1-29
V6730 AY.88 2.16e-1 263 2021-4-12 2022-9-5
V6730 B.1.1.10 6.47e-2 60 2020-3-1 2022-4-4
V6730 B.1.1.157 1.38e-2 16 2020-5-20 2021-3-30
V6730 B.1.1.28 1.52e-2 67 2020-3-5 2022-6-15
V6730 B.1.1.348 6.31e-2 89 2020-4-30 2021-7-20
V6730 B.1.1.432 6.15e-2 49 2020-4-24 2021-5-8
V6730 B.1.177.6 1.23e-2 11 2020-7-7 2021-3-7
V6730 B.1.214.2 2.86e-2 46 2020-6-2 2021-11-5
V6730 B.1.36.8 1.32e-1 119 2020-4-11 2022-5-5
V6730 B.1.409 1.38e-2 17 2020-9-23 2021-5-26
V6730 B.1.426 7.98e-1 952 2020-4-6 2021-4-3
V6730 B.1.577 1.08e-2 16 2020-4-6 2022-3-24
V6730 B.1.619.1 1.98e-2 32 2021-2-22 2021-9-21
V6730 BA.1.7 3.06e-2 20 2021-12-1 2022-3-15
V6730 BA.2.9.5 1.21e-2 27 2022-1-12 2023-1-12
V6730 BA.5.2.36 1.32e-2 9 2022-7-3 2023-2-10
V6730 CP.1 1.15e-2 14 2022-1-5 2023-2-7
V6730 XAZ 1.24e-2 31 2021-11-15 2023-1-19
V6730 AY.7 1.64e-2 85 2021-5-1 2022-1-15
V6730 BA.2.2 1.16e-2 77 2021-12-6 2022-11-3
V6730 A.19 3.92e-2 4 2020-6-4 2021-3-5
V6730 A.28 6.26e-1 169 2020-7-28 2021-5-28
V6730 B.1.1.155 1.00e+0 14 2020-6-2 2020-6-25
V6730 B.1.1.209 3.16e-2 3 2020-5-6 2021-3-31
V6730 B.1.1.389 1.22e-2 2 2020-6-18 2021-4-7
V6730 B.1.1.38 1.25e-1 2 2020-5-25 2020-7-16
V6730 B.1.1.407 2.82e-2 2 2020-6-9 2021-2-14
V6730 B.1.1.412 3.82e-2 5 2020-6-18 2021-6-7
V6730 B.1.1.521 2.07e-2 4 2020-5-15 2021-10-23
V6730 BA.2.79 1.48e-2 4 2022-4-13 2022-11-10
V6730 BA.4.1.10 1.55e-2 5 2022-6-30 2022-12-26
V6730 BA.5.2.37 2.14e-2 8 2022-6-30 2023-1-18
V6730 BE.6 2.40e-2 8 2022-8-5 2023-2-15
V6730 BV.1 1.35e-2 3 2022-7-1 2022-12-5
V6730 C.18 1.06e-2 2 2020-7-1 2021-10-8
V6730 C.23 1.52e-2 3 2020-5-7 2021-4-27
V6730 L.3 1.92e-2 5 2020-7-7 2021-9-18
V6730 W.3 2.84e-2 5 2020-8-18 2021-1-26
V6730 P.1 4.87e-2 3401 2020-4-7 2022-7-23






Examining mutation (6276C>T) found in abundant sequences of non-human animal hosts

Exploring mutation presence across 35 non-human animal hosts for cross-species transmission.
Note: We retained the mutation that appear in at least three non-human animal hosts' sequences. The data is obtained from GISAID's metadata, specifically capturing the host of genomic sequences.

Animal host Lineage Source region Collection date Accession ID
Odocoileus virginianus AY.39 USA 2022-1-30 EPI_ISL_10347095
Odocoileus virginianus AY.39 USA 2022-1-16 EPI_ISL_10347096
Odocoileus virginianus AY.39 USA 2022-1-18 EPI_ISL_10436384
Odocoileus virginianus AY.39 USA 2022-1-27 EPI_ISL_10347094
Odocoileus virginianus AY.103 USA 2021-11-29 EPI_ISL_16366921
Odocoileus virginianus AY.103 USA 2021-11-29 EPI_ISL_16297231
Odocoileus virginianus B.1.1.7 USA 2021-11-30 EPI_ISL_16297210
Odocoileus virginianus B.1.1.7 USA 2021-12-1 EPI_ISL_16308415




Association between mutation (6276C>T) and patients of different ages, genders, and statuses

Note: The logistic regression model was employed to examine changes in patient data before and after the mutation. The logistic regression model was conducted using the glm function in R. The data is obtained from GISAID's metadata, specifically capturing the patient status, gender, and age of genomic sequences.

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient statuses (ambulatory, deceased, homebound, hospitalized, mild, and recovered) based on GISAID classifications. In the analysis exploring the association between mutation and patient status, the model included mutation, patient status, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient status Ambulatory 6.84e-1 1.80e-1 3.81e+0 1.41e-4 Increase
Deceased -5.41e-1 4.35e-1 -1.24e+0 2.14e-1 Decrease
Homebound -1.73e+1 1.25e+3 -1.38e-2 9.89e-1 Decrease
Hospitalized 4.91e-2 1.35e-1 3.64e-1 7.16e-1 Increase
Mild 2.10e+0 2.92e-1 7.19e+0 6.35e-13 Increase
Recovered -9.00e-1 1.72e-1 -5.24e+0 1.60e-7 Decrease

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient age (0-17, 18-39, 40-64, 65-84, and 85+). In the analysis exploring the association between mutation and patient age, the model included mutation, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient age, years 0-17 -9.45e-2 4.41e-2 -2.14e+0 3.21e-2 Decrease
18-39 -8.15e-2 2.28e-2 -3.58e+0 3.49e-4 Decrease
40-64 1.54e-2 2.25e-2 6.85e-1 4.93e-1 Increase
65-84 2.62e-2 3.08e-2 8.50e-1 3.95e-1 Increase
>=85 3.25e-1 5.24e-2 6.20e+0 5.73e-10 Increase

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient gender (male and female). In the analysis exploring the association between mutation and patient gender, the model included mutation, patient gender, patient age, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient gender Male 1.80e-2 2.19e-2 8.24e-1 4.10e-1 Increase





Investigating natural selection at mutation (6276C>T) site for genetic adaptation and diversity

Note: Investigating the occurrence of positive selection or negative selection at this mutation site reveals implications for genetic adaptation and diversity.

The MEME method within the HyPhy software was employed to analyze positive selection. MEME: episodic selection.
Note: List of sites found to be under episodic selection by MEME (p < 0.05). "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site P-value Lineage Method

The FEL method within the HyPhy software was employed to analyze both positive and negative selection. FEL: pervasive selection on samll datasets.
Note: List of sites found to be under pervasive selection by FEL (p < 0.05). A beta value greater than alpha signifies positive selection, while a beta value smaller than alpha signifies negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Alpha Beta P-value Lineage Method

The FUBAR method within the HyPhy software was employed to analyze both positive and negative selection. FUBAR: pervasive selection on large datasets.
Note: List of sites found to be under pervasive selection by FUBAR (prob > 0.95). A prob[alpha < beta] value exceeding 0.95 indicates positive selection, while a prob[alpha > beta] value exceeding 0.95 indicates negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Prob[alpha>beta] Prob[alpha<beta] Lineage Method




Alterations in protein physicochemical properties induced by mutation (6276C>T)

Understanding the alterations in protein physicochemical properties can reveal the evolutionary processes and adaptive changes of viruses
Note: ProtParam software was used for the analysis of physicochemical properties. Significant change threshold: A change exceeding 10% compared to the reference is considered a significant change. "GRAVY" is an abbreviation for "grand average of hydropathicity".

Group Protein name Molecular weight Theoretical PI Extinction coefficients Aliphatic index GRAVY




Alterations in protein stability induced by mutation (6276C>T)

The impact of mutations on protein stability directly or indirectly affects the biological characteristics, adaptability, and transmission capacity of the virus
Note: iMutant 2.0 was utilized to analyze the effects of mutations on protein stability. pH 7 and a temperature of 25°C are employed to replicate the in vitro environment. pH 7.4 and a temperature of 37°C are utilized to simulate the in vivo environment.

Mutation Protein name Mutation type Position ΔDDG Stability pH Temperature Condition




Impact on protein function induced by mutation (6276C>T)

The impact of mutations on protein function
Note: The MutPred2 software was used to predict the pathogenicity of a mutation and gives the molecular mechanism of pathogenicity. A score above 0.5 indicates an increased likelihood of pathogenicity. "Pr" is the abbreviation for "proportion. P" is the abbreviation for "p-value.

Mutation Protein name Mutation type Score Molecular mechanisms




Exploring mutation (6276C>T) distribution within intrinsically disordered protein regions

Intrinsically Disordered Proteins (IDPs) which refers to protein regions that have no unique 3D structure. In viral proteins, mutations in the disordered regions s are critical for immune evasion and antibody escape, suggesting potential additional implications for vaccines and monoclonal therapeutic strategies.
Note: The iupred3 software was utilized for analyzing IDPs. A score greater than 0.5 is considered indicative of an IDP. In the plot, "POS" represents the position of the mutation.





Alterations in enzyme cleavage sites induced by mutation (6276C>T)

Exploring the impact of mutations on the cleavage sites of 28 enzymes.
Note: The PeptideCutter software was used for detecting enzymes cleavage sites. The increased enzymes cleavage sites refer to the cleavage sites in the mutated protein that are added compared to the reference protein. Conversely, the decreased enzymes cleavage sites indicate the cleavage sites in the mutated protein that are reduced compared to the reference protein.

Mutation Protein name Genome position Enzyme name Increased cleavage sites Decreased cleavage sites




Impact of spike protein mutation (6276C>T) on antigenicity and immunogenicity

Investigating the impact of mutations on antigenicity and immunogenicity carries important implications for vaccine design and our understanding of immune responses.
Note: An absolute change greater than 0.0102 (three times the median across sites) in antigenicity score is considered significant. An absolute changegreater than 0.2754 (three times the median across sites) in immunogenicity score is considered significant. The VaxiJen tool was utilized for antigenicity analysis. The IEDB tool was used for immunogenicity analysis. Antigens with a prediction score of more than 0.4 for this tool are considered candidate antigens. MHC I immunogenicity score >0, indicating a higher probability to stimulate an immune response.

Group Protein name Protein region Antigenicity score Immunogenicity score




Impact of mutation (6276C>T) on viral transmissibility by the affinity between RBD and ACE2 receptor

Unraveling the impact of mutations on the interaction between the receptor binding domain (RBD) and ACE2 receptor using deep mutational scanning (DMS) experimental data to gain insights into their effects on viral transmissibility.
Note: The ΔBinding affinity represents the disparity between the binding affinity of a mutation and the reference binding affinity. A positive Δbinding affinity value (Δlog10(KD,app) > 0) signifies an increased affinity between RBD and ACE2 receptor due to the mutation. Conversely, a negative value (Δlog10(KD,app) < 0) indicates a reduced affinity between RBD and ACE2 receptor caused by the mutation. A p-value smaller than 0.05 indicates significance. "Ave mut bind" represents the average binding affinity of this mutation. "Ave ref bind" refers to the average binding affinity at a site without any mutation (reference binding affinity).

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Mutation Protein name Protein region Mutation Position Ave mut bind Ave ref bind ΔBinding affinity P-value Image


The interface between the receptor binding domain (RBD) and ACE2 receptor is depicted in the crystal structure 6JM0.
Note: The structure 6M0J encompasses the RBD range of 333 to 526. The binding sites (403-406, 408, 417, 439, 445-447, 449, 453, 455-456, 473-478, 484-498, and 500-506) on the RBD that interface with ACE2 are indicated in magenta. The binding sites on the RBD that have been identified through the interface footprints experiment. The ACE2 binding sites within the interface are shown in cyan, representing residues within 5Å proximity to the RBD binding sites. The mutation within the RBD range of 333 to 526 is depicted in red.

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        Show interface residues:





Impact of mutation (6276C>T) on immune escape by the affinity between RBD and antibody/serum

By utilizing experimental data from deep mutational scanning (DMS), we can uncover how mutations affect the interaction between the receptor binding domain (RBD) and antibodies/serum. This approach provides valuable insights into strategies for evading the host immune response.
Note: We considered a mutation to mediate strong escape if the escape score exceeded 0.1 (10% of the maximum score of 1). A total of 1,504 antibodies/serum data were collected for this analysis. "Condition name" refers to the name of the antibodies/serum. "Mut escape score" represents the escape score of the mutation in that specific condition. "Avg mut escape score" indicates the average escape score of the mutation site in that condition, considering the occurrence of this mutation and other mutations. Class 1 antibodies bind to an epitope only in the RBD “up” conformation, and are the most abundant. Class 2 antibodies bind to the RBD both in “up” and “down” conformations. Class 3 and class 4 antibodies both bind outside the ACE2 binding site. Class 3 antibodies bind the RBD in both the open and closed conformation, while class 4 antibodies bind only in the open conformation.

Mutation Condition name Condition type Condition subtype Condition year Mut escape score Avg mut escape score




Investigating the co-mutation patterns of mutation (6276C>T) across 2,735 viral lineages

Investigating the co-mutation patterns of SARS-CoV-2 across 2,735 viral lineages to unravel the cooperative effects of different mutations. In biological research, correlation analysis of mutation sites helps us understand whether there is a close relationship or interaction between certain mutations.
Note: The Spearman correlation coefficient is used to calculate the correlation between two mutations within each Pango lineage. Holm–Bonferroni method was used for multiple test adjustment. We retained mutation pairs with correlation values greater than 0.6 or less than -0.6 and Holm–Bonferroni corrected p-values less than 0.05.

Associated mutation ID DNA mutation Mutation type Protein name Protein mutation correlation coefficient Lineage
V3935 1564G>T missense_variant S A522S 1.00e+0 B.1.147
V4014 2031G>C missense_variant S Q677H 6.02e-1 AY.100
V2269 11755C>T missense_variant ORF1ab_pp1a L3919F 7.13e-1 AY.25
V3145 18715C>T missense_variant ORF1ab_pp1ab H6239Y 8.17e-1 AY.25
V4480 316C>T missense_variant ORF3a L106F 6.36e-1 AY.25
V3858 1240C>A missense_variant S Q414K 6.31e-1 AY.3
V1921 9173C>T missense_variant ORF1ab_pp1a T3058I 6.47e-1 AY.5
V2756 15820C>T missense_variant ORF1ab_pp1ab H5274Y 6.34e-1 AY.5
V3978 1868C>T missense_variant S A623V 6.75e-1 AY.5
V4954 250C>T missense_variant ORF7a P84S 6.20e-1 AY.5
V5843 72C>T synonymous_variant ORF1ab_pp1a R24R 6.39e-1 AY.5
V7573 12996C>T synonymous_variant ORF1ab_pp1a C4332C 7.05e-1 AY.5
V8736 801G>T synonymous_variant S V267V 6.21e-1 AY.5
V8746 882C>T synonymous_variant S D294D 7.37e-1 AY.5
V1548 6497C>T missense_variant ORF1ab_pp1a T2166I 8.39e-1 P.1
V377 925C>T missense_variant ORF1ab_pp1a P309S 8.05e-1 P.1
V4034 2063C>T missense_variant S A688V 7.88e-1 P.1
V8158 17481C>T synonymous_variant ORF1ab_pp1ab N5827N 8.29e-1 P.1
V5382 404C>T missense_variant N T135I 7.77e-1 AY.125
V4428 207G>T missense_variant ORF3a W69C 6.64e-1 AY.20
V6655 5766C>T synonymous_variant ORF1ab_pp1a N1922N 8.77e-1 AY.20
V7181 9873C>T synonymous_variant ORF1ab_pp1a N3291N 8.77e-1 AY.20
V3910 1450G>C missense_variant S E484Q 6.33e-1 AY.39
V4014 2031G>C missense_variant S Q677H 8.00e-1 AY.39
V499 1358T>C missense_variant ORF1ab_pp1a I453T 8.23e-1 AY.39
V7246 10377G>T synonymous_variant ORF1ab_pp1a T3459T 7.63e-1 AY.39
V3429 20687C>T missense_variant ORF1ab_pp1ab S6896L 6.26e-1 B.1.429
V1300 5261C>T missense_variant ORF1ab_pp1a T1754I 7.77e-1 BA.5.6
V2482 13430C>T missense_variant ORF1ab_pp1ab T4477I 7.65e-1 BA.5.6
V5348 214G>C missense_variant N V72L 6.32e-1 A.23.1
V6425 4035G>T synonymous_variant ORF1ab_pp1a V1345V 7.90e-1 A.23.1
V8610 21147C>T synonymous_variant ORF1ab_pp1ab P7049P 6.32e-1 A.23.1
V2961 17482C>T missense_variant ORF1ab_pp1ab P5828S 8.16e-1 A.2.5.2
V3813 940C>A missense_variant S Q314K 1.00e+0 A.2.5.2
V5975 777G>A synonymous_variant ORF1ab_pp1a L259L 1.00e+0 A.2.5.2
V6293 2991T>C synonymous_variant ORF1ab_pp1a N997N 7.07e-1 A.2.5
V603 1772C>T missense_variant ORF1ab_pp1a A591V 7.07e-1 A.27
V5322 104C>T missense_variant N A35V 7.07e-1 A
V5872 216A>G synonymous_variant ORF1ab_pp1a K72K 7.07e-1 A
V6 -222C>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 A
V6141 1932C>T synonymous_variant ORF1ab_pp1a D644D 7.07e-1 A
V7161 9723C>T synonymous_variant ORF1ab_pp1a F3241F 7.07e-1 A
V9430 96A>G synonymous_variant ORF7a K32K 7.07e-1 A
V8073 16875T>A synonymous_variant ORF1ab_pp1ab S5625S 8.94e-1 AU.3
V5102 89C>T missense_variant ORF8 P30L 6.05e-1 AY.101
V8542 20640A>G synonymous_variant ORF1ab_pp1ab T6880T 6.12e-1 AY.101
V2964 17485G>T missense_variant ORF1ab_pp1ab A5829S 7.06e-1 AY.104
V1173 4489C>T missense_variant ORF1ab_pp1a P1497S 8.66e-1 AY.106
V5484 630G>T missense_variant N M210I 6.01e-1 AY.106
V5841 48C>T synonymous_variant ORF1ab_pp1a L16L 7.90e-1 AY.106
V3060 18131C>T missense_variant ORF1ab_pp1ab A6044V 7.66e-1 AY.108
V5993 906T>C synonymous_variant ORF1ab_pp1a S302S 8.72e-1 AY.108
V6555 4974C>T synonymous_variant ORF1ab_pp1a Y1658Y 7.23e-1 AY.108
V7697 14001C>T synonymous_variant ORF1ab_pp1ab F4667F 8.72e-1 AY.108
V7795 14661C>T synonymous_variant ORF1ab_pp1ab V4887V 8.72e-1 AY.108
V7817 14856C>T synonymous_variant ORF1ab_pp1ab V4952V 8.72e-1 AY.108
V8220 17997C>T synonymous_variant ORF1ab_pp1ab I5999I 6.85e-1 AY.108
V9267 69C>T synonymous_variant E F23F 8.72e-1 AY.108
V9585 111A>T synonymous_variant N S37S 8.72e-1 AY.108
V9736 871C>T synonymous_variant N L291L 8.37e-1 AY.108
V3320 19973G>T missense_variant ORF1ab_pp1ab R6658M 1.00e+0 AY.109
V4124 2786G>C missense_variant S S929T 1.00e+0 AY.109
V4979 296C>T missense_variant ORF7a P99L 1.00e+0 AY.10
V202 257T>A missense_variant ORF1ab_pp1a V86D 8.16e-1 AY.110
V3283 19735G>T missense_variant ORF1ab_pp1ab V6579F 6.66e-1 AY.110
V3910 1450G>C missense_variant S E484Q 8.16e-1 AY.110
V4610 719C>T missense_variant ORF3a P240L 8.16e-1 AY.110
V7246 10377G>T synonymous_variant ORF1ab_pp1a T3459T 8.16e-1 AY.110
V4014 2031G>C missense_variant S Q677H 7.49e-1 AY.113
V4610 719C>T missense_variant ORF3a P240L 6.38e-1 AY.113
V499 1358T>C missense_variant ORF1ab_pp1a I453T 7.49e-1 AY.113
V7246 10377G>T synonymous_variant ORF1ab_pp1a T3459T 6.78e-1 AY.113
V2904 17061G>T missense_variant ORF1ab_pp1ab L5687F 7.07e-1 AY.114
V4014 2031G>C missense_variant S Q677H 7.07e-1 AY.114
V1608 6854C>T missense_variant ORF1ab_pp1a S2285F 7.07e-1 AY.116
V2565 13938G>T missense_variant ORF1ab_pp1ab E4646D 1.00e+0 AY.116
V2788 16202C>A missense_variant ORF1ab_pp1ab P5401Q 1.00e+0 AY.116
V6106 1732C>T synonymous_variant ORF1ab_pp1a L578L 1.00e+0 AY.116
V4007 2017A>G missense_variant S S673G 7.07e-1 AY.118
V7251 10437C>T synonymous_variant ORF1ab_pp1a D3479D 6.97e-1 AY.119
V619 1841C>T missense_variant ORF1ab_pp1a T614I 1.00e+0 AY.120.2.1
V3076 18224T>C missense_variant ORF1ab_pp1ab I6075T 6.25e-1 AY.120
V6386 3756C>T synonymous_variant ORF1ab_pp1a N1252N 6.31e-1 AY.120
V7367 11481A>G synonymous_variant ORF1ab_pp1a G3827G 8.21e-1 AY.120
V8147 17427A>G synonymous_variant ORF1ab_pp1ab S5809S 6.40e-1 AY.120
V1469 6220G>T missense_variant ORF1ab_pp1a D2074Y 6.90e-1 AY.121
V8011 16383G>T synonymous_variant ORF1ab_pp1ab T5461T 6.94e-1 AY.121
V3555 79G>T missense_variant S A27S 8.66e-1 AY.122.4
V6591 5247C>T synonymous_variant ORF1ab_pp1a N1749N 1.00e+0 AY.122.4
V7023 8691C>T synonymous_variant ORF1ab_pp1a Y2897Y 8.66e-1 AY.122.4
V7976 16125T>C synonymous_variant ORF1ab_pp1ab N5375N 8.94e-1 AY.122.4
V8405 19329C>T synonymous_variant ORF1ab_pp1ab N6443N 7.07e-1 AY.123
V1695 7667C>T missense_variant ORF1ab_pp1a S2556L 1.00e+0 AY.131
V4933 212T>C missense_variant ORF7a V71A 1.00e+0 AY.131
V5730 *4316A>G downstream_gene_variant S None 7.07e-1 AY.131
V8041 16653G>T synonymous_variant ORF1ab_pp1ab L5551L 7.07e-1 AY.131
V3454 20873A>G missense_variant ORF1ab_pp1ab K6958R 1.00e+0 AY.132
V1121 3965C>T missense_variant ORF1ab_pp1a T1322I 7.07e-1 AY.16
V6292 2988C>T synonymous_variant ORF1ab_pp1a D996D 7.07e-1 AY.16
V9368 480C>T synonymous_variant M D160D 1.00e+0 AY.16
V5747 *4337C>T downstream_gene_variant S None 9.57e-1 AY.17
V6362 3522C>T synonymous_variant ORF1ab_pp1a Y1174Y 6.08e-1 AY.17
V7510 12555A>G synonymous_variant ORF1ab_pp1a L4185L 6.73e-1 AY.17
V8579 20931T>C synonymous_variant ORF1ab_pp1ab D6977D 7.17e-1 AY.17
V4748 206C>T missense_variant M A69V 7.30e-1 AY.24
V2269 11755C>T missense_variant ORF1ab_pp1a L3919F 1.00e+0 AY.25.2
V3145 18715C>T missense_variant ORF1ab_pp1ab H6239Y 1.00e+0 AY.25.2
V4026 2048G>T missense_variant S R683L 1.00e+0 AY.25.2
V432 1138C>T missense_variant ORF1ab_pp1a P380S 1.00e+0 AY.25.2
V4480 316C>T missense_variant ORF3a L106F 1.00e+0 AY.25.2
V8434 19611C>T synonymous_variant ORF1ab_pp1ab I6537I 1.00e+0 AY.25.2
V3638 432_434delTTA disruptive_inframe_deletion S Y145del 6.31e-1 AY.28
V4438 232C>T missense_variant ORF3a H78Y 6.31e-1 AY.28
V482 1328C>T missense_variant ORF1ab_pp1a S443F 6.31e-1 AY.28
V5675 -5G>T upstream_gene_variant ORF10 None 6.31e-1 AY.28
V5730 *4316A>G downstream_gene_variant S None 6.31e-1 AY.28
V6010 999G>T synonymous_variant ORF1ab_pp1a T333T 6.31e-1 AY.28
V7346 11310C>T synonymous_variant ORF1ab_pp1a F3770F 6.31e-1 AY.28
V1570 6671C>T missense_variant ORF1ab_pp1a S2224F 1.00e+0 AY.29.2
V2269 11755C>T missense_variant ORF1ab_pp1a L3919F 7.07e-1 AY.32
V4421 199A>G missense_variant ORF3a K67E 1.00e+0 AY.32
V4462 295G>T missense_variant ORF3a A99S 1.00e+0 AY.32
V5475 622G>T missense_variant N A208S 7.07e-1 AY.32
V5594 1075G>T missense_variant N A359S 1.00e+0 AY.32
V7785 14574C>T synonymous_variant ORF1ab_pp1ab I4858I 1.00e+0 AY.32
V9058 3303C>T synonymous_variant S H1101H 1.00e+0 AY.32
V4979 296C>T missense_variant ORF7a P99L 7.27e-1 AY.33
V5721 *4295C>T downstream_gene_variant S None 7.07e-1 AY.34.1
V1018 3473C>T missense_variant ORF1ab_pp1a P1158L 9.05e-1 AY.34
V2462 13253C>T missense_variant ORF1ab_pp1ab T4418I 8.42e-1 AY.34
V2926 17233T>C missense_variant ORF1ab_pp1ab Y5745H 9.74e-1 AY.34
V3305 19840C>T missense_variant ORF1ab_pp1ab L6614F 8.98e-1 AY.34
V3748 665C>T missense_variant S A222V 9.48e-1 AY.34
V476 1321G>A missense_variant ORF1ab_pp1a E441K 9.67e-1 AY.34
V5153 194C>T missense_variant ORF8 A65V 9.36e-1 AY.34
V5382 404C>T missense_variant N T135I 9.31e-1 AY.34
V6779 6717C>T synonymous_variant ORF1ab_pp1a C2239C 9.47e-1 AY.34
V7273 10605G>T synonymous_variant ORF1ab_pp1a L3535L 9.23e-1 AY.34
V9369 483C>T synonymous_variant M I161I 9.14e-1 AY.34
V4256 3656G>T missense_variant S G1219V 7.07e-1 AY.35
V531 1555G>A missense_variant ORF1ab_pp1a G519S 6.68e-1 AY.37
V1721 7825C>T missense_variant ORF1ab_pp1a L2609F 7.07e-1 AY.39.1.1
V2653 14762C>T missense_variant ORF1ab_pp1ab A4921V 1.00e+0 AY.39.1.1
V3873 1332G>T missense_variant S K444N 1.00e+0 AY.39.1.1
V4476 310C>T missense_variant ORF3a P104S 8.66e-1 AY.39.1.1
V5797 *4375G>T downstream_gene_variant S None 6.66e-1 AY.39.1.1
V5853 105G>T synonymous_variant ORF1ab_pp1a V35V 1.00e+0 AY.39.1.1
V7111 9396C>T synonymous_variant ORF1ab_pp1a F3132F 1.00e+0 AY.39.1.1
V7488 12399C>T synonymous_variant ORF1ab_pp1a A4133A 1.00e+0 AY.39.1.1
V2578 14003C>T missense_variant ORF1ab_pp1ab T4668M 8.66e-1 AY.39.1.2
V1512 6371C>T missense_variant ORF1ab_pp1a T2124I 7.07e-1 AY.39.1.4
V3080 18244C>T missense_variant ORF1ab_pp1ab L6082F 7.07e-1 AY.39.1.4
V392 997A>G missense_variant ORF1ab_pp1a T333A 7.07e-1 AY.39.1.4
V4183 3259G>T missense_variant S A1087S 7.07e-1 AY.39.1.4
V4691 211C>T missense_variant E P71S 7.07e-1 AY.39.1.4
V5594 1075G>T missense_variant N A359S 7.07e-1 AY.39.1.4
V8934 2403T>C synonymous_variant S N801N 7.07e-1 AY.39.1.4
V4016 2033C>T missense_variant S T678I 8.57e-1 AY.41
V4755 227T>C missense_variant M I76T 1.00e+0 AY.43.8
V2357 12439G>A missense_variant ORF1ab_pp1a V4147I 6.15e-1 AY.4.3
V3516 21287A>T missense_variant ORF1ab_pp1ab N7096I 9.78e-1 AY.4.3
V531 1555G>A missense_variant ORF1ab_pp1a G519S 1.00e+0 AY.4.3
V5790 *4367G>T downstream_gene_variant S None 8.36e-1 AY.4.3
V7436 11883A>G synonymous_variant ORF1ab_pp1a Q3961Q 9.50e-1 AY.4.3
V7197 9963C>T synonymous_variant ORF1ab_pp1a L3321L 6.17e-1 AY.46
V5477 623C>T missense_variant N A208V 1.00e+0 AY.4.8
V7612 13287C>T synonymous_variant ORF1ab_pp1ab I4429I 1.00e+0 AY.4.8
V6507 4662C>T synonymous_variant ORF1ab_pp1a D1554D 1.00e+0 AY.48
V7691 13956C>T synonymous_variant ORF1ab_pp1ab D4652D 1.00e+0 AY.48
V9638 414C>T synonymous_variant N A138A 1.00e+0 AY.48
V4463 296C>T missense_variant ORF3a A99V 1.00e+0 AY.53
V5743 *4331G>T downstream_gene_variant S None 7.07e-1 AY.53
V8161 17502C>T synonymous_variant ORF1ab_pp1ab V5834V 1.00e+0 AY.5.4
V7399 11685C>T synonymous_variant ORF1ab_pp1a H3895H 9.58e-1 AY.54
V6810 6936A>G synonymous_variant ORF1ab_pp1a S2312S 8.16e-1 AY.57
V8171 17583G>A synonymous_variant ORF1ab_pp1ab Q5861Q 8.16e-1 AY.57
V902 3042G>T missense_variant ORF1ab_pp1a M1014I 1.00e+0 AY.57
V3211 19138C>T missense_variant ORF1ab_pp1ab H6380Y 7.07e-1 AY.70
V1281 5061G>T missense_variant ORF1ab_pp1a E1687D 8.00e-1 AY.7.1
V4504 385C>T missense_variant ORF3a L129F 7.75e-1 AY.7.1
V8751 918C>T synonymous_variant S F306F 6.71e-1 AY.7.1
V9630 348G>T synonymous_variant N G116G 7.30e-1 AY.7.1
V3778 757G>T missense_variant S D253Y 1.00e+0 AY.7.2
V5451 595C>T missense_variant N P199S 1.00e+0 AY.72
V5588 1042G>T missense_variant N D348Y 9.76e-1 AY.7
V1821 8468C>T missense_variant ORF1ab_pp1a T2823I 8.36e-1 AY.85
V2120 10844C>T missense_variant ORF1ab_pp1a A3615V 7.15e-1 AY.85
V4534 505A>G missense_variant ORF3a I169V 7.89e-1 AY.85
V7476 12208C>T synonymous_variant ORF1ab_pp1a L4070L 6.15e-1 AY.85
V6537 4875C>T synonymous_variant ORF1ab_pp1a D1625D 1.00e+0 AY.86
V7472 12174C>T synonymous_variant ORF1ab_pp1a P4058P 1.00e+0 AY.86
V8540 20616T>C synonymous_variant ORF1ab_pp1ab S6872S 1.00e+0 AY.86
V4331 67G>T missense_variant ORF3a A23S 9.25e-1 AY.88
V6777 6703C>T synonymous_variant ORF1ab_pp1a L2235L 6.90e-1 AY.88
V3567 162G>C missense_variant S L54F 7.07e-1 AY.91
V4382 134G>T missense_variant ORF3a W45L 7.07e-1 AY.91
V5891 276C>T synonymous_variant ORF1ab_pp1a L92L 7.07e-1 AY.91
V6921 7875C>T synonymous_variant ORF1ab_pp1a S2625S 7.07e-1 AY.91
V8378 19116C>T synonymous_variant ORF1ab_pp1ab Y6372Y 7.07e-1 AY.91
V61 -68G>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 AY.93
V7660 13752C>T synonymous_variant ORF1ab_pp1ab F4584F 1.00e+0 AY.93
V3246 19454C>T missense_variant ORF1ab_pp1ab T6485I 7.07e-1 AY.95
V3806 865G>A missense_variant S V289I 7.07e-1 AY.95
V6794 6816C>T synonymous_variant ORF1ab_pp1a N2272N 7.07e-1 AY.95
V4014 2031G>C missense_variant S Q677H 1.00e+0 AY.99
V4610 719C>T missense_variant ORF3a P240L 1.00e+0 AY.99
V499 1358T>C missense_variant ORF1ab_pp1a I453T 1.00e+0 AY.99
V7246 10377G>T synonymous_variant ORF1ab_pp1a T3459T 1.00e+0 AY.99
V7414 11760C>T synonymous_variant ORF1ab_pp1a S3920S 6.69e-1 AY.99
V7264 10524C>T synonymous_variant ORF1ab_pp1a D3508D 7.07e-1 AY.9
V1719 7818G>A missense_variant ORF1ab_pp1a M2606I 1.00e+0 AZ.2
V3479 21031G>A missense_variant ORF1ab_pp1ab G7011S 1.00e+0 AZ.2
V3480 21032G>A missense_variant ORF1ab_pp1ab G7011D 1.00e+0 AZ.2
V5781 *4360G>T downstream_gene_variant S None 7.07e-1 AZ.2
V6215 2430C>T synonymous_variant ORF1ab_pp1a N810N 7.07e-1 AZ.2
V7476 12208C>T synonymous_variant ORF1ab_pp1a L4070L 1.00e+0 AZ.2
V8599 21030T>A synonymous_variant ORF1ab_pp1ab L7010L 1.00e+0 AZ.2
V1265 4941G>T missense_variant ORF1ab_pp1a M1647I 9.18e-1 B.1.1.10
V1880 8807C>T missense_variant ORF1ab_pp1a T2936I 9.33e-1 B.1.1.10
V2558 13917G>C missense_variant ORF1ab_pp1ab L4639F 8.30e-1 B.1.1.10
V5380 401C>T missense_variant N A134V 7.19e-1 B.1.1.10
V906 3052C>T missense_variant ORF1ab_pp1a P1018S 9.26e-1 B.1.1.10
V9229 636C>T synonymous_variant ORF3a Y212Y 9.26e-1 B.1.1.10
V9753 939G>T synonymous_variant N A313A 7.42e-1 B.1.1.10
V4313 41C>T missense_variant ORF3a T14I 1.00e+0 B.1.1.141
V4381 131G>T missense_variant ORF3a G44V 1.00e+0 B.1.1.141
V8473 19998A>G synonymous_variant ORF1ab_pp1ab L6666L 1.00e+0 B.1.1.141
V8555 20706C>T synonymous_variant ORF1ab_pp1ab V6902V 1.00e+0 B.1.1.141
V96 -25C>A upstream_gene_variant ORF1ab_pp1a None 1.00e+0 B.1.1.141
V9680 594T>C synonymous_variant N T198T 1.00e+0 B.1.1.141
V3253 19536G>T missense_variant ORF1ab_pp1ab K6512N 1.00e+0 B.1.1.157
V3748 665C>T missense_variant S A222V 7.52e-1 B.1.1.157
V842 2831C>T missense_variant ORF1ab_pp1a S944L 7.52e-1 B.1.1.157
V1278 5045C>T missense_variant ORF1ab_pp1a T1682I 7.07e-1 B.1.1.192
V1866 8699C>T missense_variant ORF1ab_pp1a S2900L 1.00e+0 B.1.1.192
V1302 5279C>T missense_variant ORF1ab_pp1a T1760I 7.30e-1 B.1.1.1
V1503 6328C>T missense_variant ORF1ab_pp1a P2110S 6.32e-1 B.1.1.1
V5115 113C>T missense_variant ORF8 P38L 6.32e-1 B.1.1.1
V5378 382G>T missense_variant N D128Y 6.32e-1 B.1.1.1
V8710 624G>A synonymous_variant S T208T 1.00e+0 B.1.1.207
V3158 18754C>T missense_variant ORF1ab_pp1ab P6252S 8.16e-1 B.1.1.214
V5848 90C>T synonymous_variant ORF1ab_pp1a G30G 7.62e-1 B.1.1.214
V1832 8537C>T missense_variant ORF1ab_pp1a T2846I 7.06e-1 B.1.1.216
V2874 16861C>T missense_variant ORF1ab_pp1ab L5621F 8.16e-1 B.1.1.216
V4426 203G>T missense_variant ORF3a R68I 8.16e-1 B.1.1.216
V5111 106C>T missense_variant ORF8 P36S 8.66e-1 B.1.1.216
V8901 2049G>T synonymous_variant S R683R 7.06e-1 B.1.1.216
V1369 5761C>T missense_variant ORF1ab_pp1a P1921S 8.16e-1 B.1.1.25
V2098 10731G>T missense_variant ORF1ab_pp1a K3577N 8.16e-1 B.1.1.25
V858 2897C>T missense_variant ORF1ab_pp1a S966F 8.16e-1 B.1.1.25
V4546 524C>T missense_variant ORF3a T175I 7.07e-1 B.1.1.277
V992 3373G>T missense_variant ORF1ab_pp1a G1125C 1.00e+0 B.1.1.277
V3540 62G>T missense_variant S R21I 6.12e-1 B.1.1.284
V6779 6717C>T synonymous_variant ORF1ab_pp1a C2239C 6.12e-1 B.1.1.284
V8466 19884C>T synonymous_variant ORF1ab_pp1ab F6628F 9.43e-1 B.1.1.284
V2156 11007G>T missense_variant ORF1ab_pp1a M3669I 6.55e-1 B.1.1.28
V3661 454T>A missense_variant S W152R 7.12e-1 B.1.1.28
V4168 3208G>T missense_variant S A1070S 6.59e-1 B.1.1.28
V7621 13353G>A synonymous_variant ORF1ab_pp1ab K4451K 7.12e-1 B.1.1.28
V1972 9626C>T missense_variant ORF1ab_pp1a A3209V 7.36e-1 B.1.1.306
V2329 12194C>T missense_variant ORF1ab_pp1a T4065I 6.64e-1 B.1.1.306
V2779 16112C>T missense_variant ORF1ab_pp1ab P5371L 9.72e-1 B.1.1.306
V3987 1919C>T missense_variant S S640F 9.19e-1 B.1.1.306
V6833 7155C>T synonymous_variant ORF1ab_pp1a I2385I 7.35e-1 B.1.1.306
V7111 9396C>T synonymous_variant ORF1ab_pp1a F3132F 6.55e-1 B.1.1.306
V7819 14877C>T synonymous_variant ORF1ab_pp1ab T4959T 6.74e-1 B.1.1.306
V8172 17586C>T synonymous_variant ORF1ab_pp1ab G5862G 9.44e-1 B.1.1.306
V8181 17652A>G synonymous_variant ORF1ab_pp1ab R5884R 9.72e-1 B.1.1.306
V9763 981G>A synonymous_variant N S327S 8.95e-1 B.1.1.306
V6423 4020G>A synonymous_variant ORF1ab_pp1a E1340E 8.75e-1 B.1.1.311
V7299 10830C>T synonymous_variant ORF1ab_pp1a A3610A 9.35e-1 B.1.1.311
V8881 1971C>T synonymous_variant S N657N 8.75e-1 B.1.1.311
V2795 16264G>T missense_variant ORF1ab_pp1ab V5422F 1.00e+0 B.1.1.316
V4809 41T>C missense_variant ORF6 I14T 1.00e+0 B.1.1.316
V1707 7762G>T missense_variant ORF1ab_pp1a V2588F 8.16e-1 B.1.1.326
V4608 717G>T missense_variant ORF3a E239D 7.73e-1 B.1.1.326
V4775 373C>T missense_variant M H125Y 6.65e-1 B.1.1.326
V3182 18898G>T missense_variant ORF1ab_pp1ab D6300Y 8.45e-1 B.1.1.33
V3799 799G>T missense_variant S V267L 8.45e-1 B.1.1.33
V326 671C>T missense_variant ORF1ab_pp1a T224I 7.07e-1 B.1.1.372
V2067 10496A>G missense_variant ORF1ab_pp1a K3499R 1.00e+0 B.1.1.416
V2443 13159C>T missense_variant ORF1ab_pp1a R4387C 7.07e-1 B.1.1.416
V3228 19322C>T missense_variant ORF1ab_pp1ab T6441I 1.00e+0 B.1.1.416
V5399 455C>T missense_variant N A152V 1.00e+0 B.1.1.416
V5513 702G>T missense_variant N M234I 8.94e-1 B.1.1.416
V7239 10329C>T synonymous_variant ORF1ab_pp1a N3443N 8.94e-1 B.1.1.416
V8594 20997A>G synonymous_variant ORF1ab_pp1ab S6999S 1.00e+0 B.1.1.416
V9448 168G>T synonymous_variant ORF7a L56L 8.16e-1 B.1.1.416
V1195 4595A>G missense_variant ORF1ab_pp1a D1532G 9.69e-1 B.1.1.432
V1353 5585C>T missense_variant ORF1ab_pp1a P1862L 9.58e-1 B.1.1.432
V2856 16750G>T missense_variant ORF1ab_pp1ab D5584Y 9.58e-1 B.1.1.432
V6422 4011C>T synonymous_variant ORF1ab_pp1a Y1337Y 9.49e-1 B.1.1.432
V9418 183T>C synonymous_variant ORF6 D61D 8.99e-1 B.1.1.432
V9777 1038C>T synonymous_variant N F346F 8.85e-1 B.1.1.432
V554 1625G>T missense_variant ORF1ab_pp1a R542L 1.00e+0 B.1.1.464
V6083 1588C>T synonymous_variant ORF1ab_pp1a L530L 1.00e+0 B.1.1.464
V7111 9396C>T synonymous_variant ORF1ab_pp1a F3132F 1.00e+0 B.1.1.464
V7181 9873C>T synonymous_variant ORF1ab_pp1a N3291N 1.00e+0 B.1.1.464
V7185 9891C>T synonymous_variant ORF1ab_pp1a D3297D 1.00e+0 B.1.1.464
V7960 15999T>C synonymous_variant ORF1ab_pp1ab N5333N 1.00e+0 B.1.1.464
V5487 632C>T missense_variant N A211V 7.15e-1 B.1.1.519
V7173 9783T>C synonymous_variant ORF1ab_pp1a V3261V 7.44e-1 B.1.1.519
V7317 11070G>T synonymous_variant ORF1ab_pp1a V3690V 6.51e-1 B.1.1.519
V9372 492G>T synonymous_variant M L164L 7.50e-1 B.1.1.519
V997 3419A>G missense_variant ORF1ab_pp1a Q1140R 7.62e-1 B.1.1.519
V3015 17899A>G missense_variant ORF1ab_pp1ab I5967V 7.07e-1 B.1.1.523
V9562 24T>C synonymous_variant N N8N 1.00e+0 B.1.1.523
V9176 222C>T synonymous_variant ORF3a S74S 1.00e+0 B.1.1.529
V3536 59C>T missense_variant S T20I 6.68e-1 B.1.160
V4781 463C>T missense_variant M H155Y 7.40e-1 B.1.160
V677 2041C>T missense_variant ORF1ab_pp1a L681F 6.98e-1 B.1.160
V9771 999C>T synonymous_variant N Y333Y 7.09e-1 B.1.160
V1532 6436C>T missense_variant ORF1ab_pp1a L2146F 7.07e-1 B.1.1.70
V2730 15593C>T missense_variant ORF1ab_pp1ab T5198I 1.00e+0 B.1.1.70
V4716 4G>T missense_variant M A2S 1.00e+0 B.1.1.70
V4813 60G>T missense_variant ORF6 R20S 1.00e+0 B.1.1.70
V6028 1161C>T synonymous_variant ORF1ab_pp1a Y387Y 1.00e+0 B.1.1.70
V9294 78C>T synonymous_variant M F26F 1.00e+0 B.1.1.70
V5962 678G>A synonymous_variant ORF1ab_pp1a R226R 1.00e+0 B.1.177.10
V6498 4620T>C synonymous_variant ORF1ab_pp1a N1540N 1.00e+0 B.1.177.10
V6753 6441C>T synonymous_variant ORF1ab_pp1a N2147N 7.07e-1 B.1.177.10
V4183 3259G>T missense_variant S A1087S 7.06e-1 B.1.177.18
V6877 7569C>T synonymous_variant ORF1ab_pp1a N2523N 8.16e-1 B.1.177.18
V9141 60C>T synonymous_variant ORF3a I20I 1.00e+0 B.1.177.18
V8677 336G>A synonymous_variant S S112S 1.00e+0 B.1.177.21
V1325 5429C>T missense_variant ORF1ab_pp1a P1810L 7.07e-1 B.1.177.57
V4721 11C>T missense_variant M S4F 1.00e+0 B.1.177.7
V8420 19536G>A synonymous_variant ORF1ab_pp1ab K6512K 7.07e-1 B.1.177.81
V48 -92G>T upstream_gene_variant ORF1ab_pp1a None 6.31e-1 B.1.177.82
V2847 16711G>T missense_variant ORF1ab_pp1ab V5571F 7.07e-1 B.1.177.86
V8076 16881C>T synonymous_variant ORF1ab_pp1ab R5627R 6.02e-1 B.1.214.2
V2317 12047C>T missense_variant ORF1ab_pp1a A4016V 6.31e-1 B.1.239
V3456 20881C>T missense_variant ORF1ab_pp1ab L6961F 7.07e-1 B.1.239
V3536 59C>T missense_variant S T20I 7.07e-1 B.1.239
V3953 1715C>T missense_variant S T572I 7.07e-1 B.1.239
V499 1358T>C missense_variant ORF1ab_pp1a I453T 7.07e-1 B.1.239
V536 1567A>G missense_variant ORF1ab_pp1a I523V 1.00e+0 B.1.239
V7200 9987C>T synonymous_variant ORF1ab_pp1a F3329F 7.07e-1 B.1.239
V8289 18450C>T synonymous_variant ORF1ab_pp1ab A6150A 1.00e+0 B.1.239
V6096 1650C>T synonymous_variant ORF1ab_pp1a R550R 6.32e-1 B.1.240
V8281 18400C>T synonymous_variant ORF1ab_pp1ab L6134L 6.32e-1 B.1.240
V379 926C>T missense_variant ORF1ab_pp1a P309L 7.07e-1 B.1.241
V4011 2025G>T missense_variant S Q675H 7.07e-1 B.1.241
V5775 *4357C>T downstream_gene_variant S None 1.00e+0 B.1.241
V6754 6465C>T synonymous_variant ORF1ab_pp1a N2155N 1.00e+0 B.1.241
V7155 9702C>T synonymous_variant ORF1ab_pp1a L3234L 1.00e+0 B.1.351.5
V1379 5803A>G missense_variant ORF1ab_pp1a I1935V 7.00e-1 B.1.351
V876 2965G>T missense_variant ORF1ab_pp1a G989C 6.33e-1 B.1.351
V9530 183C>T synonymous_variant ORF8 C61C 6.88e-1 B.1.351
V890 2999C>T missense_variant ORF1ab_pp1a T1000I 8.66e-1 B.1.36.17
V1043 3602A>T missense_variant ORF1ab_pp1a Q1201L 7.07e-1 B.1.36.18
V4112 2576C>T missense_variant S T859I 1.00e+0 B.1.361
V4386 142G>T missense_variant ORF3a V48F 8.16e-1 B.1.361
V632 1882C>T missense_variant ORF1ab_pp1a L628F 8.66e-1 B.1.361
V8002 16332C>T synonymous_variant ORF1ab_pp1ab Y5444Y 1.00e+0 B.1.361
V1483 6260C>T missense_variant ORF1ab_pp1a T2087I 7.06e-1 B.1.36.31
V4596 668C>T missense_variant ORF3a T223I 7.06e-1 B.1.36.31
V4959 266G>T missense_variant ORF7a R89I 1.00e+0 B.1.36.31
V5776 *4358G>A downstream_gene_variant S None 1.00e+0 B.1.36.31
V2329 12194C>T missense_variant ORF1ab_pp1a T4065I 9.62e-1 B.1.36.8
V3667 459G>T missense_variant S M153I 9.62e-1 B.1.36.8
V4154 3058G>T missense_variant S A1020S 9.81e-1 B.1.36.8
V5153 194C>T missense_variant ORF8 A65V 9.71e-1 B.1.36.8
V5644 1204G>T missense_variant N D402Y 9.76e-1 B.1.36.8
V5653 1240G>T missense_variant N A414S 9.85e-1 B.1.36.8
V7998 16290T>C synonymous_variant ORF1ab_pp1ab F5430F 9.85e-1 B.1.36.8
V1392 5863C>T missense_variant ORF1ab_pp1a L1955F 7.09e-1 B.1.369
V7205 10065T>C synonymous_variant ORF1ab_pp1a D3355D 6.83e-1 B.1.369
V9610 234C>T synonymous_variant N S78S 6.32e-1 B.1.36
V6193 2271C>T synonymous_variant ORF1ab_pp1a V757V 7.68e-1 B.1.409
V7205 10065T>C synonymous_variant ORF1ab_pp1a D3355D 8.02e-1 B.1.409
V8522 20439C>T synonymous_variant ORF1ab_pp1ab Y6813Y 6.32e-1 B.1.438.1
V1099 3840G>T missense_variant ORF1ab_pp1a K1280N 7.07e-1 B.1.466.2
V3388 20330C>T missense_variant ORF1ab_pp1ab T6777I 7.07e-1 B.1.466.2
V8178 17619C>T synonymous_variant ORF1ab_pp1ab T5873T 7.07e-1 B.1.466.2
V8656 219C>T synonymous_variant S T73T 7.07e-1 B.1.466.2
V2171 11034G>T missense_variant ORF1ab_pp1a K3678N 7.07e-1 B.1.499
V4061 2240C>T missense_variant S T747I 9.49e-1 B.1.561
V6624 5481C>T synonymous_variant ORF1ab_pp1a Y1827Y 6.32e-1 B.1.561
V8902 2073C>T synonymous_variant S S691S 9.13e-1 B.1.561
V2450 13187C>T missense_variant ORF1ab_pp1a A4396V 6.12e-1 B.1.575
V6723 6198G>T synonymous_variant ORF1ab_pp1a V2066V 7.07e-1 B.1.575
V445 1192C>T missense_variant ORF1ab_pp1a R398C 8.16e-1 B.1.576
V3273 19691C>T missense_variant ORF1ab_pp1ab T6564I 1.00e+0 B.1.588
V74 -56G>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 B.1.588
V1548 6497C>T missense_variant ORF1ab_pp1a T2166I 7.07e-1 B.1.596
V3535 59C>A missense_variant S T20N 1.00e+0 B.1.596
V3551 76C>T missense_variant S P26S 7.07e-1 B.1.596
V3628 412G>T missense_variant S D138Y 1.00e+0 B.1.596
V377 925C>T missense_variant ORF1ab_pp1a P309S 7.07e-1 B.1.596
V3909 1450G>A missense_variant S E484K 1.00e+0 B.1.596
V5352 239C>G missense_variant N P80R 7.07e-1 B.1.596
V6736 6348A>G synonymous_variant ORF1ab_pp1a V2116V 1.00e+0 B.1.596
V7644 13596C>T synonymous_variant ORF1ab_pp1ab D4532D 7.07e-1 B.1.596
V1522 6401C>T missense_variant ORF1ab_pp1a P2134L 1.00e+0 B.1.609
V2934 17297G>A missense_variant ORF1ab_pp1ab R5766Q 7.07e-1 B.1.609
V2993 17756G>A missense_variant ORF1ab_pp1ab R5919K 1.00e+0 B.1.609
V4695 217C>T missense_variant E L73F 1.00e+0 B.1.609
V4535 512C>T missense_variant ORF3a S171L 7.07e-1 B.1.612
V5224 358T>G missense_variant ORF8 F120V 1.00e+0 B.1.612
V5990 885C>T synonymous_variant ORF1ab_pp1a G295G 1.00e+0 B.1.612
V6035 1206C>T synonymous_variant ORF1ab_pp1a R402R 1.00e+0 B.1.612
V7781 14541C>T synonymous_variant ORF1ab_pp1ab Y4847Y 1.00e+0 B.1.612
V204 269C>T missense_variant ORF1ab_pp1a A90V 9.52e-1 B.1.619.1
V8301 18543C>T synonymous_variant ORF1ab_pp1ab N6181N 8.08e-1 B.1.619.1
V8787 1233T>C synonymous_variant S A411A 8.27e-1 B.1.619.1
V5086 49C>T missense_variant ORF8 H17Y 7.07e-1 B.40
V3100 18387G>T missense_variant ORF1ab_pp1ab E6129D 1.00e+0 B.6
V4042 2101G>T missense_variant S A701S 1.00e+0 B.6
V8852 1758C>T synonymous_variant S D586D 1.00e+0 B.6
V617 1829C>T missense_variant ORF1ab_pp1a S610L 6.32e-1 BA.1.1.10
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 1.00e+0 BA.1.1.16
V4003 1996A>G missense_variant S I666V 7.07e-1 BA.1.14.1
V2212 11257T>G missense_variant ORF1ab_pp1a F3753V 7.74e-1 BA.1.21
V8315 18613C>T synonymous_variant ORF1ab_pp1ab L6205L 6.71e-1 BA.1.21
V9034 3183C>T synonymous_variant S V1061V 7.74e-1 BA.1.21
V9356 426T>C synonymous_variant M A142A 7.84e-1 BA.1.7
V5995 912T>C synonymous_variant ORF1ab_pp1a Y304Y 7.07e-1 BA.2.13
V984 3349G>A missense_variant ORF1ab_pp1a V1117I 7.07e-1 BA.2.13
V848 2852C>T missense_variant ORF1ab_pp1a T951I 1.00e+0 BA.2.24
V5513 702G>T missense_variant N M234I 9.18e-1 BA.2.2
V1636 7121T>C missense_variant ORF1ab_pp1a M2374T 7.07e-1 BA.2.3.10
V5469 614C>T missense_variant N T205I 8.66e-1 BA.2.3.12
V5926 480C>T synonymous_variant ORF1ab_pp1a N160N 1.00e+0 BA.2.3.12
V9688 642C>T synonymous_variant N G214G 1.00e+0 BA.2.3.12
V5147 188A>G missense_variant ORF8 D63G 8.16e-1 BA.2.3.13
V6247 2637C>T synonymous_variant ORF1ab_pp1a V879V 8.16e-1 BA.2.3.13
V4537 514G>T missense_variant ORF3a G172C 1.00e+0 BA.2.3.20
V5721 *4295C>T downstream_gene_variant S None 1.00e+0 BA.2.3.20
V6919 7872G>A synonymous_variant ORF1ab_pp1a V2624V 7.07e-1 BA.2.3.20
V1389 5849C>T missense_variant ORF1ab_pp1a P1950L 1.00e+0 BA.2.3.2
V953 3232G>A missense_variant ORF1ab_pp1a A1078T 1.00e+0 BA.2.3.2
V2205 11242G>A missense_variant ORF1ab_pp1a V3748I 1.00e+0 BA.2.38
V5163 205T>C missense_variant ORF8 S69P 1.00e+0 BA.2.38
V526 1535C>A missense_variant ORF1ab_pp1a T512K 1.00e+0 BA.2.38
V2975 17558C>T missense_variant ORF1ab_pp1ab P5853L 7.06e-1 BA.2.43
V6446 4191C>T synonymous_variant ORF1ab_pp1a A1397A 1.00e+0 BA.2.43
V2611 14320G>A missense_variant ORF1ab_pp1ab A4774T 1.00e+0 BA.2.5
V603 1772C>T missense_variant ORF1ab_pp1a A591V 7.07e-1 BA.2.5
V629 1879G>A missense_variant ORF1ab_pp1a V627I 7.07e-1 BA.2.5
V7129 9543C>T synonymous_variant ORF1ab_pp1a C3181C 1.00e+0 BA.2.5
V7391 11637C>T synonymous_variant ORF1ab_pp1a L3879L 1.00e+0 BA.2.73
V4768 270G>T missense_variant M L90F 1.00e+0 BA.2.74
V5440 578G>C missense_variant N S193T 9.13e-1 BA.2.75.5
V562 1649G>A missense_variant ORF1ab_pp1a R550H 1.00e+0 BA.2.75
V9066 3366G>T synonymous_variant S V1122V 7.07e-1 BA.2.75
V9357 429G>C synonymous_variant M V143V 7.07e-1 BA.2.75
V9225 621C>T synonymous_variant ORF3a F207F 7.07e-1 BA.2.76
V947 3218G>A missense_variant ORF1ab_pp1a G1073E 7.07e-1 BA.2.76
V1513 6373C>T missense_variant ORF1ab_pp1a H2125Y 7.74e-1 BA.2.9.1
V3278 19706C>T missense_variant ORF1ab_pp1ab A6569V 7.06e-1 BA.2.9.1
V8839 1647A>G synonymous_variant S T549T 1.00e+0 BA.2.9.3
V9037 3195G>T synonymous_variant S V1065V 1.00e+0 BA.2.9.3
V9480 315G>T synonymous_variant ORF7a A105A 1.00e+0 BA.2.9.3
V1593 6791C>T missense_variant ORF1ab_pp1a T2264I 7.07e-1 BA.4.1.6
V5628 1148C>T missense_variant N P383L 7.07e-1 BA.4.1.6
V5918 432C>T synonymous_variant ORF1ab_pp1a D144D 7.07e-1 BA.4.1.6
V4405 171G>C missense_variant ORF3a Q57H 6.32e-1 BA.4.1.8
V5596 1085C>T missense_variant N T362I 7.06e-1 BA.4.1.9
V635 1890G>T missense_variant ORF1ab_pp1a W630C 7.06e-1 BA.4.1.9
V1300 5261C>T missense_variant ORF1ab_pp1a T1754I 8.66e-1 BA.4.4
V6368 3567C>T synonymous_variant ORF1ab_pp1a S1189S 8.66e-1 BA.4.4
V2986 17713C>T missense_variant ORF1ab_pp1ab L5905F 8.16e-1 BA.4.6.1
V4061 2240C>T missense_variant S T747I 7.07e-1 BA.4.6.5
V6656 5772C>T synonymous_variant ORF1ab_pp1a S1924S 7.71e-1 BA.4.6.5
V1889 8897A>G missense_variant ORF1ab_pp1a N2966S 7.23e-1 BA.4
V7507 12550C>T synonymous_variant ORF1ab_pp1a L4184L 1.00e+0 BA.5.1.18
V2911 17075C>T missense_variant ORF1ab_pp1ab A5692V 6.77e-1 BA.5.1.1
V9665 519A>T synonymous_variant N A173A 7.03e-1 BA.5.1.1
V5009 7G>A missense_variant ORF7b E3K 7.07e-1 BA.5.11
V7044 8868C>T synonymous_variant ORF1ab_pp1a L2956L 1.00e+0 BA.5.11
V5071 20T>C missense_variant ORF8 L7S 1.00e+0 BA.5.1.21
V6817 7002C>T synonymous_variant ORF1ab_pp1a F2334F 8.00e-1 BA.5.1.25
V5116 116T>C missense_variant ORF8 I39T 7.07e-1 BA.5.1.27
V5587 1042G>C missense_variant N D348H 7.07e-1 BA.5.1.27
V1327 5435C>T missense_variant ORF1ab_pp1a A1812V 1.00e+0 BA.5.1.4
V1594 6793G>A missense_variant ORF1ab_pp1a G2265S 1.00e+0 BA.5.1.4
V6565 5040G>A synonymous_variant ORF1ab_pp1a L1680L 7.07e-1 BA.5.1.4
V9763 981G>A synonymous_variant N S327S 1.00e+0 BA.5.1.4
V7960 15999T>C synonymous_variant ORF1ab_pp1ab N5333N 1.00e+0 BA.5.1.5
V3242 19420G>T missense_variant ORF1ab_pp1ab V6474L 7.90e-1 BA.5.1.6
V5563 922G>T missense_variant N A308S 7.90e-1 BA.5.1.6
V6463 4321C>T synonymous_variant ORF1ab_pp1a L1441L 1.00e+0 BA.5.1.7
V6732 6303C>T synonymous_variant ORF1ab_pp1a D2101D 1.00e+0 BA.5.1.7
V1201 4625C>T missense_variant ORF1ab_pp1a T1542I 1.00e+0 BA.5.1.9
V2815 16469C>T missense_variant ORF1ab_pp1ab S5490L 1.00e+0 BA.5.1.9
V3705 550G>A missense_variant S G184S 1.00e+0 BA.5.1.9
V4105 2555C>T missense_variant S A852V 1.00e+0 BA.5.1.9
V650 1964G>A missense_variant ORF1ab_pp1a C655Y 1.00e+0 BA.5.1.9
V8006 16362C>T synonymous_variant ORF1ab_pp1ab L5454L 1.00e+0 BA.5.1.9
V8154 17469C>T synonymous_variant ORF1ab_pp1ab F5823F 1.00e+0 BA.5.1.9
V8204 17856C>T synonymous_variant ORF1ab_pp1ab L5952L 1.00e+0 BA.5.1.9
V8295 18492G>A synonymous_variant ORF1ab_pp1ab P6164P 1.00e+0 BA.5.1.9
V1370 5762C>A missense_variant ORF1ab_pp1a P1921Q 7.07e-1 BA.5.2.12
V7042 8853C>T synonymous_variant ORF1ab_pp1a D2951D 7.07e-1 BA.5.2.12
V949 3220G>A missense_variant ORF1ab_pp1a A1074T 7.07e-1 BA.5.2.12
V1173 4489C>T missense_variant ORF1ab_pp1a P1497S 7.07e-1 BA.5.2.16
V9570 60C>T synonymous_variant N P20P 7.07e-1 BA.5.2.16
V9106 3597T>C synonymous_variant S D1199D 6.90e-1 BA.5.2.20
V3695 542G>A missense_variant S G181E 6.70e-1 BA.5.2.24
V6035 1206C>T synonymous_variant ORF1ab_pp1a R402R 6.70e-1 BA.5.2.24
V1748 7975C>T missense_variant ORF1ab_pp1a H2659Y 6.80e-1 BA.5.2.26
V2539 13766G>A missense_variant ORF1ab_pp1ab R4589Q 8.82e-1 BA.5.2.26
V3486 21041G>A missense_variant ORF1ab_pp1ab R7014H 7.03e-1 BA.5.2.26
V5111 106C>T missense_variant ORF8 P36S 8.25e-1 BA.5.2.26
V6655 5766C>T synonymous_variant ORF1ab_pp1a N1922N 7.77e-1 BA.5.2.26
V6023 1122C>T synonymous_variant ORF1ab_pp1a H374H 9.04e-1 BA.5.2.27
V6978 8361C>T synonymous_variant ORF1ab_pp1a F2787F 7.27e-1 BA.5.2.27
V7130 9546C>T synonymous_variant ORF1ab_pp1a T3182T 9.49e-1 BA.5.2.27
V7353 11388C>T synonymous_variant ORF1ab_pp1a L3796L 9.49e-1 BA.5.2.27
V8294 18486T>C synonymous_variant ORF1ab_pp1ab Y6162Y 9.49e-1 BA.5.2.27
V2778 16111C>T missense_variant ORF1ab_pp1ab P5371S 1.00e+0 BA.5.2.2
V1185 4550C>T missense_variant ORF1ab_pp1a S1517F 8.15e-1 BA.5.2.36
V7293 10785C>T synonymous_variant ORF1ab_pp1a V3595V 8.15e-1 BA.5.2.36
V2627 14508G>T missense_variant ORF1ab_pp1ab Q4836H 1.00e+0 BA.5.2.47
V6577 5127C>T synonymous_variant ORF1ab_pp1a N1709N 1.00e+0 BA.5.2.47
V6630 5547C>T synonymous_variant ORF1ab_pp1a D1849D 7.07e-1 BA.5.2.47
V6639 5628C>T synonymous_variant ORF1ab_pp1a T1876T 1.00e+0 BA.5.2.47
V3072 18188C>T missense_variant ORF1ab_pp1ab A6063V 6.66e-1 BA.5.2.48
V324 664A>G missense_variant ORF1ab_pp1a I222V 8.16e-1 BA.5.2.7
V6700 6087G>A synonymous_variant ORF1ab_pp1a K2029K 8.16e-1 BA.5.2.7
V9744 906G>T synonymous_variant N P302P 8.16e-1 BA.5.2.7
V5660 -20A>T upstream_gene_variant ORF10 None 7.92e-1 BA.5.3.1
V8902 2073C>T synonymous_variant S S691S 8.94e-1 BA.5.3.2
V6332 3270C>T synonymous_variant ORF1ab_pp1a Y1090Y 6.54e-1 BD.1
V3479 21031G>A missense_variant ORF1ab_pp1ab G7011S 7.07e-1 BE.10
V3480 21032G>A missense_variant ORF1ab_pp1ab G7011D 7.07e-1 BE.10
V8599 21030T>A synonymous_variant ORF1ab_pp1ab L7010L 7.07e-1 BE.10
V5531 752C>T missense_variant N A251V 7.07e-1 BE.1.2
V783 2597C>T missense_variant ORF1ab_pp1a T866I 1.00e+0 BE.1.2
V7330 11184T>C synonymous_variant ORF1ab_pp1a D3728D 7.07e-1 BE.4
V4625 766G>A missense_variant ORF3a V256I 7.07e-1 BE.9
V7558 12936G>A synonymous_variant ORF1ab_pp1a P4312P 7.07e-1 BE.9
V3316 19957C>A missense_variant ORF1ab_pp1ab Q6653K 1.00e+0 BF.11.3
V194 252_254delTAT disruptive_inframe_deletion ORF1ab_pp1a M85del 7.06e-1 BF.12
V1812 8395C>T missense_variant ORF1ab_pp1a H2799Y 7.07e-1 BF.13
V4625 766G>A missense_variant ORF3a V256I 7.07e-1 BF.13
V266 429T>A missense_variant ORF1ab_pp1a F143L 1.00e+0 BF.18
V4297 3790G>T missense_variant S V1264L 1.00e+0 BF.18
V5330 119G>A missense_variant N R40H 1.00e+0 BF.18
V1300 5261C>T missense_variant ORF1ab_pp1a T1754I 1.00e+0 BF.27
V2027 10076C>T missense_variant ORF1ab_pp1a P3359L 7.07e-1 BF.2
V596 1750A>G missense_variant ORF1ab_pp1a M584V 8.16e-1 BF.31.1
V1021 3478C>T missense_variant ORF1ab_pp1a H1160Y 6.32e-1 BF.7.4
V5398 454G>T missense_variant N A152S 7.07e-1 BF.7.4
V293 548C>T missense_variant ORF1ab_pp1a T183I 1.00e+0 BF.7.5
V7498 12489C>T synonymous_variant ORF1ab_pp1a C4163C 7.07e-1 BF.7.5
V6674 5922C>T synonymous_variant ORF1ab_pp1a H1974H 7.07e-1 B
V3169 18838C>T missense_variant ORF1ab_pp1ab P6280S 1.00e+0 BG.2
V7673 13836T>C synonymous_variant ORF1ab_pp1ab G4612G 7.07e-1 BG.2
V4661 24G>T missense_variant E E8D 1.00e+0 BL.2
V6346 3354C>T synonymous_variant ORF1ab_pp1a V1118V 1.00e+0 BL.2
V1885 8855C>T missense_variant ORF1ab_pp1a T2952I 1.00e+0 BM.1.1.1
V5644 1204G>T missense_variant N D402Y 1.00e+0 BM.1.1.1
V804 2672C>T missense_variant ORF1ab_pp1a T891I 1.00e+0 BM.1.1.1
V6875 7554C>T synonymous_variant ORF1ab_pp1a L2518L 7.07e-1 BM.1.1.3
V7399 11685C>T synonymous_variant ORF1ab_pp1a H3895H 1.00e+0 BN.1.1
V9697 684C>T synonymous_variant N N228N 1.00e+0 BN.1.1
V9763 981G>A synonymous_variant N S327S 1.00e+0 BN.1.1
V7151 9675C>T synonymous_variant ORF1ab_pp1a S3225S 1.00e+0 BN.1.4
V5965 690C>T synonymous_variant ORF1ab_pp1a C230C 1.00e+0 BN.3.1
V2242 11486T>C missense_variant ORF1ab_pp1a L3829P 7.74e-1 BQ.1.10
V6419 3990G>A synonymous_variant ORF1ab_pp1a P1330P 1.00e+0 BQ.1.1.1
V674 2029A>G missense_variant ORF1ab_pp1a T677A 7.07e-1 BQ.1.12
V754 2394G>T missense_variant ORF1ab_pp1a K798N 7.07e-1 BQ.1.12
V826 2782G>T missense_variant ORF1ab_pp1a D928Y 9.33e-1 BQ.1.1.31
V6494 4596T>C synonymous_variant ORF1ab_pp1a D1532D 1.00e+0 BQ.1.1.5
V3073 18193C>T missense_variant ORF1ab_pp1ab P6065S 7.07e-1 BQ.1.22
V4691 211C>T missense_variant E P71S 7.07e-1 BQ.1.22
V5691 23C>T missense_variant ORF10 A8V 7.07e-1 BQ.1.22
V6155 2052A>G synonymous_variant ORF1ab_pp1a K684K 7.07e-1 BQ.1.22
V7094 9237C>T synonymous_variant ORF1ab_pp1a A3079A 7.07e-1 BQ.1.22
V8189 17763G>A synonymous_variant ORF1ab_pp1ab V5921V 7.07e-1 BQ.1.22
V9353 405A>G synonymous_variant M E135E 7.07e-1 BQ.1.25
V246 392C>T missense_variant ORF1ab_pp1a A131V 1.00e+0 BQ.1.8
V2013 10021A>G missense_variant ORF1ab_pp1a I3341V 1.00e+0 BR.2
V6940 8028C>T synonymous_variant ORF1ab_pp1a T2676T 1.00e+0 BR.2
V7176 9813C>T synonymous_variant ORF1ab_pp1a F3271F 7.07e-1 BR.2
V2136 10934C>T missense_variant ORF1ab_pp1a A3645V 7.07e-1 BU.1
V2513 13598C>T missense_variant ORF1ab_pp1ab T4533I 1.00e+0 BU.1
V5937 558C>T synonymous_variant ORF1ab_pp1a V186V 7.07e-1 BU.1
V6050 1305T>C synonymous_variant ORF1ab_pp1a H435H 1.00e+0 BU.1
V8333 18753C>T synonymous_variant ORF1ab_pp1ab F6251F 7.07e-1 BU.1
V2101 10736C>T missense_variant ORF1ab_pp1a T3579I 6.66e-1 C.36.3
V6329 3258A>G synonymous_variant ORF1ab_pp1a E1086E 1.00e+0 CA.3
V8859 1818C>T synonymous_variant S N606N 1.00e+0 CH.1.1.1
V3924 1480T>C missense_variant S S494P 7.07e-1 CK.2.1.1
V7092 9219A>G synonymous_variant ORF1ab_pp1a E3073E 7.07e-1 CL.1
V5600 1093C>T missense_variant N P365S 7.07e-1 CR.1
V6661 5799T>C synonymous_variant ORF1ab_pp1a D1933D 1.00e+0 DL.1
V3983 1891C>T missense_variant S P631S 7.07e-1 N.5
V5670 -12C>T upstream_gene_variant ORF10 None 7.07e-1 N.5
V6054 1344C>T synonymous_variant ORF1ab_pp1a D448D 7.07e-1 N.5
V624 1862A>G missense_variant ORF1ab_pp1a Y621C 7.07e-1 N.5
V721 2269G>A missense_variant ORF1ab_pp1a V757I 7.07e-1 N.5
V920 3100C>T missense_variant ORF1ab_pp1a L1034F 7.07e-1 N.5
V9769 996C>A synonymous_variant N T332T 7.07e-1 N.5
V1131 4055C>T missense_variant ORF1ab_pp1a A1352V 8.16e-1 P.1.10
V1548 6497C>T missense_variant ORF1ab_pp1a T2166I 8.16e-1 P.1.10
V8158 17481C>T synonymous_variant ORF1ab_pp1ab N5827N 8.16e-1 P.1.10
V1548 6497C>T missense_variant ORF1ab_pp1a T2166I 7.07e-1 P.1.12
V377 925C>T missense_variant ORF1ab_pp1a P309S 7.07e-1 P.1.12
V8158 17481C>T synonymous_variant ORF1ab_pp1ab N5827N 7.07e-1 P.1.12
V9755 945C>T synonymous_variant N F315F 8.70e-1 P.1.16
V2018 10052A>G missense_variant ORF1ab_pp1a K3351R 1.00e+0 P.1.1
V4735 100C>T missense_variant M L34F 9.26e-1 P.1.1
V5129 152C>T missense_variant ORF8 A51V 8.01e-1 P.1.1
V6682 5985C>T synonymous_variant ORF1ab_pp1a N1995N 9.26e-1 P.1.1
V6850 7335C>T synonymous_variant ORF1ab_pp1a C2445C 9.35e-1 P.1.1
V258 416A>G missense_variant ORF1ab_pp1a D139G 6.20e-1 XAZ
V8330 18717C>T synonymous_variant ORF1ab_pp1ab H6239H 8.97e-1 XAZ
V6420 3990G>T synonymous_variant ORF1ab_pp1a P1330P 7.07e-1 XBB.1.2
V6220 2448A>G synonymous_variant ORF1ab_pp1a K816K 7.07e-1 XBB.1.9.1
V2126 10859C>T missense_variant ORF1ab_pp1a A3620V 7.71e-1 XBB.2
V8468 19914C>T synonymous_variant ORF1ab_pp1ab V6638V 1.00e+0 A.19
V3050 18058C>T missense_variant ORF1ab_pp1ab H6020Y 7.03e-1 A.2.5.3
V3418 20596A>G missense_variant ORF1ab_pp1ab I6866V 7.03e-1 A.2.5.3
V5136 164C>T missense_variant ORF8 A55V 7.03e-1 A.2.5.3
V9159 129C>T synonymous_variant ORF3a F43F 1.00e+0 A.2.5.3
V7161 9723C>T synonymous_variant ORF1ab_pp1a F3241F 6.66e-1 A.28
V7953 15972G>A synonymous_variant ORF1ab_pp1ab Q5324Q -7.43e-1 A.28
V813 2708C>T missense_variant ORF1ab_pp1a A903V 8.93e-1 AZ.1
V1548 6497C>T missense_variant ORF1ab_pp1a T2166I 7.04e-1 B.1.1.117
V1724 7837G>T missense_variant ORF1ab_pp1a V2613F 1.00e+0 B.1.1.117
V2897 16995G>T missense_variant ORF1ab_pp1ab E5665D 7.04e-1 B.1.1.117
V342 794C>T missense_variant ORF1ab_pp1a T265I 1.00e+0 B.1.1.117
V3860 1250A>C missense_variant S K417T 1.00e+0 B.1.1.117
V3927 1501A>T missense_variant S N501Y 7.04e-1 B.1.1.117
V3997 1963C>T missense_variant S H655Y 1.00e+0 B.1.1.117
V5457 604A>T missense_variant N S202C 7.04e-1 B.1.1.117
V5459 605G>C missense_variant N S202T 7.04e-1 B.1.1.117
V5825 *4450T>A downstream_gene_variant S None 1.00e+0 B.1.1.117
V5924 468T>C synonymous_variant ORF1ab_pp1a D156D 7.04e-1 B.1.1.117
V6736 6348A>G synonymous_variant ORF1ab_pp1a V2116V 7.04e-1 B.1.1.117
V7503 12513C>T synonymous_variant ORF1ab_pp1a Y4171Y 1.00e+0 B.1.1.117
V9359 432C>T synonymous_variant M I144I 1.00e+0 B.1.1.117
V2006 9990G>T missense_variant ORF1ab_pp1a L3330F 1.00e+0 B.1.1.180
V3273 19691C>T missense_variant ORF1ab_pp1ab T6564I 7.03e-1 B.1.1.180
V4117 2635G>T missense_variant S A879S 1.00e+0 B.1.1.180
V4839 181G>C missense_variant ORF6 D61H 1.00e+0 B.1.1.180
V4841 182A>T missense_variant ORF6 D61V 1.00e+0 B.1.1.180
V5770 *4353G>T downstream_gene_variant S None 1.00e+0 B.1.1.180
V5916 418C>T synonymous_variant ORF1ab_pp1a L140L 1.00e+0 B.1.1.180
V6178 2190C>T synonymous_variant ORF1ab_pp1a L730L 1.00e+0 B.1.1.180
V7302 10887C>T synonymous_variant ORF1ab_pp1a V3629V 1.00e+0 B.1.1.180
V808 2680G>A missense_variant ORF1ab_pp1a G894S 1.00e+0 B.1.1.180
V8302 18549T>C synonymous_variant ORF1ab_pp1ab D6183D 1.00e+0 B.1.1.180
V9418 183T>C synonymous_variant ORF6 D61D 1.00e+0 B.1.1.180
V5747 *4337C>T downstream_gene_variant S None 1.00e+0 B.1.1.209
V9174 211C>T synonymous_variant ORF3a L71L 8.12e-1 B.1.1.209
V2769 15972G>T missense_variant ORF1ab_pp1ab Q5324H 7.06e-1 B.1.1.241
V5629 1152G>T missense_variant N Q384H 7.06e-1 B.1.1.241
V9323 279C>T synonymous_variant M L93L 7.06e-1 B.1.1.241
V1708 7766A>G missense_variant ORF1ab_pp1a K2589R 1.00e+0 B.1.1.274
V7332 11196C>T synonymous_variant ORF1ab_pp1a S3732S 1.00e+0 B.1.1.274
V7854 15177C>T synonymous_variant ORF1ab_pp1ab V5059V 6.89e-1 B.1.1.324
V9173 195C>T synonymous_variant ORF3a L65L 6.89e-1 B.1.1.324
V9340 360C>T synonymous_variant M L120L 6.89e-1 B.1.1.324
V3388 20330C>T missense_variant ORF1ab_pp1ab T6777I 7.05e-1 B.1.1.328
V3470 20940G>T missense_variant ORF1ab_pp1ab K6980N 1.00e+0 B.1.1.328
V4485 328G>T missense_variant ORF3a A110S 7.05e-1 B.1.1.328
V6338 3318C>T synonymous_variant ORF1ab_pp1a S1106S 7.05e-1 B.1.1.328
V7246 10377G>T synonymous_variant ORF1ab_pp1a T3459T 1.00e+0 B.1.1.328
V1659 7463C>T missense_variant ORF1ab_pp1a S2488F 7.02e-1 B.1.1.34
V1704 7751C>T missense_variant ORF1ab_pp1a A2584V 1.00e+0 B.1.1.34
V194 252_254delTAT disruptive_inframe_deletion ORF1ab_pp1a M85del 1.00e+0 B.1.1.34
V2194 11186A>G missense_variant ORF1ab_pp1a Q3729R 1.00e+0 B.1.1.34
V306 607G>A missense_variant ORF1ab_pp1a D203N 1.00e+0 B.1.1.34
V3211 19138C>T missense_variant ORF1ab_pp1ab H6380Y 1.00e+0 B.1.1.34
V3866 1317C>A missense_variant S N439K 1.00e+0 B.1.1.34
V4111 2576C>A missense_variant S T859N 1.00e+0 B.1.1.34
V4666 55C>T missense_variant E L19F 1.00e+0 B.1.1.34
V5049 119C>T missense_variant ORF7b T40I 1.00e+0 B.1.1.34
V5655 1247C>T missense_variant N S416L 1.00e+0 B.1.1.34
V8243 18141A>G synonymous_variant ORF1ab_pp1ab T6047T 1.00e+0 B.1.1.34
V9141 60C>T synonymous_variant ORF3a I20I 1.00e+0 B.1.1.34
V9508 27C>T synonymous_variant ORF8 I9I 1.00e+0 B.1.1.34
V1249 4850C>T missense_variant ORF1ab_pp1a T1617I 6.29e-1 B.1.1.368
V1352 5584C>T missense_variant ORF1ab_pp1a P1862S 6.29e-1 B.1.1.368
V1750 7982C>T missense_variant ORF1ab_pp1a S2661F 8.15e-1 B.1.1.368
V260 421_429delAAGTCATTT conservative_inframe_deletion ORF1ab_pp1a K141_F143del 1.00e+0 B.1.1.368
V426 1115C>T missense_variant ORF1ab_pp1a A372V 8.15e-1 B.1.1.368
V4581 637C>A missense_variant ORF3a Q213K 6.29e-1 B.1.1.368
V4846 -1C>T upstream_gene_variant ORF7a None 1.00e+0 B.1.1.368
V9058 3303C>T synonymous_variant S H1101H 6.29e-1 B.1.1.368
V9567 48G>A synonymous_variant N T16T 8.15e-1 B.1.1.368
V9666 522A>G synonymous_variant N E174E 1.00e+0 B.1.1.368
V2341 12268A>G missense_variant ORF1ab_pp1a T4090A 1.00e+0 B.1.1.389
V3495 21108G>T missense_variant ORF1ab_pp1ab Q7036H 7.05e-1 B.1.1.389
V9489 30T>C synonymous_variant ORF7b Y10Y 7.05e-1 B.1.1.389
V7251 10437C>T synonymous_variant ORF1ab_pp1a D3479D 7.06e-1 B.1.13
V7792 14649C>T synonymous_variant ORF1ab_pp1ab N4883N 7.06e-1 B.1.13
V1712 7783G>T missense_variant ORF1ab_pp1a V2595F 7.02e-1 B.1.1.404
V2059 10447C>T missense_variant ORF1ab_pp1a L3483F 1.00e+0 B.1.1.404
V2918 17146C>T missense_variant ORF1ab_pp1ab R5716C 1.00e+0 B.1.1.404
V5158 197G>T missense_variant ORF8 G66V 7.02e-1 B.1.1.404
V6247 2637C>T synonymous_variant ORF1ab_pp1a V879V 1.00e+0 B.1.1.404
V6507 4662C>T synonymous_variant ORF1ab_pp1a D1554D 7.02e-1 B.1.1.404
V1477 6239C>T missense_variant ORF1ab_pp1a A2080V 1.00e+0 B.1.1.407
V5526 727G>T missense_variant N G243C 7.02e-1 B.1.1.407
V1555 6575C>T missense_variant ORF1ab_pp1a A2192V 6.15e-1 B.1.1.412
V4398 160G>T missense_variant ORF3a A54S 6.25e-1 B.1.1.412
V6591 5247C>T synonymous_variant ORF1ab_pp1a N1749N 8.91e-1 B.1.1.412
V9545 285G>A synonymous_variant ORF8 L95L 7.69e-1 B.1.1.412
V5424 544G>T missense_variant N A182S 1.00e+0 B.1.1.418
V2898 17003A>G missense_variant ORF1ab_pp1ab D5668G 7.06e-1 B.1.1.448
V3054 18076G>A missense_variant ORF1ab_pp1ab V6026I 7.06e-1 B.1.1.448
V3822 1030G>T missense_variant S A344S 7.06e-1 B.1.1.448
V6167 2142G>A synonymous_variant ORF1ab_pp1a K714K 7.06e-1 B.1.1.448
V7012 8595C>T synonymous_variant ORF1ab_pp1a V2865V 7.06e-1 B.1.1.448
V8129 17247G>T synonymous_variant ORF1ab_pp1ab V5749V 7.06e-1 B.1.1.448
V5509 688C>T missense_variant N L230F 1.00e+0 B.1.1.518
V7225 10209C>T synonymous_variant ORF1ab_pp1a F3403F 1.00e+0 B.1.1.518
V754 2394G>T missense_variant ORF1ab_pp1a K798N 1.00e+0 B.1.1.518
V9220 597C>T synonymous_variant ORF3a D199D 1.00e+0 B.1.1.518
V4134 2816C>T missense_variant S S939F 1.00e+0 B.1.1.521
V4888 110C>T missense_variant ORF7a S37F 1.00e+0 B.1.1.521
V3586 214G>A missense_variant S G72R 1.00e+0 B.1.1.526
V6338 3318C>T synonymous_variant ORF1ab_pp1a S1106S 1.00e+0 B.1.1.526
V740 2329C>T missense_variant ORF1ab_pp1a P777S 1.00e+0 B.1.1.526
V1085 3737C>T missense_variant ORF1ab_pp1a T1246I 7.05e-1 B.1.1.58
V3288 19750G>T missense_variant ORF1ab_pp1ab D6584Y 7.05e-1 B.1.1.58
V5191 285G>T missense_variant ORF8 L95F 1.00e+0 B.1.1.58
V538 1578G>T missense_variant ORF1ab_pp1a Q526H 7.05e-1 B.1.1.58
V1334 5465C>T missense_variant ORF1ab_pp1a T1822I 7.06e-1 B.1.177.72
V1800 8351C>T missense_variant ORF1ab_pp1a A2784V 7.06e-1 B.1.177.72
V5742 *4327G>T downstream_gene_variant S None 7.06e-1 B.1.177.72
V3608 284C>T missense_variant S T95I 1.00e+0 B.1.36.26
V2815 16469C>T missense_variant ORF1ab_pp1ab S5490L 1.00e+0 B.1.399
V3318 19969C>T missense_variant ORF1ab_pp1ab P6657S 1.00e+0 B.1.399
V460 1249C>T missense_variant ORF1ab_pp1a H417Y 8.16e-1 B.1.399
V6997 8520G>A synonymous_variant ORF1ab_pp1a Q2840Q 6.30e-1 B.1.399
V9345 372C>T synonymous_variant M L124L 1.00e+0 B.1.399
V6375 3627G>A synonymous_variant ORF1ab_pp1a E1209E 1.00e+0 B.1.420
V6846 7299C>T synonymous_variant ORF1ab_pp1a S2433S 1.00e+0 B.1.420
V7185 9891C>T synonymous_variant ORF1ab_pp1a D3297D 1.00e+0 B.1.420
V7766 14460C>T synonymous_variant ORF1ab_pp1ab F4820F 1.00e+0 B.1.420
V9002 2880C>T synonymous_variant S N960N 1.00e+0 B.1.420
V4126 2794G>A missense_variant S G932S 1.00e+0 B.1.441
V6035 1206C>T synonymous_variant ORF1ab_pp1a R402R 1.00e+0 B.1.441
V8651 210C>T synonymous_variant S V70V 1.00e+0 B.1.441
V1616 6908C>T missense_variant ORF1ab_pp1a S2303F 1.00e+0 B.1.469
V5451 595C>T missense_variant N P199S 1.00e+0 B.1.469
V1200 4621C>T missense_variant ORF1ab_pp1a P1541S 1.00e+0 B.1.523
V6563 5025T>C synonymous_variant ORF1ab_pp1a Y1675Y 1.00e+0 B.1.590
V9771 999C>T synonymous_variant N Y333Y 1.00e+0 B.1.606
V2736 15643G>T missense_variant ORF1ab_pp1ab G5215C 1.00e+0 B.1.617.3
V8698 489G>T synonymous_variant S A163A 1.00e+0 B.1.617.3
V1935 9261G>T missense_variant ORF1ab_pp1a M3087I 1.00e+0 B.1.634
V5276 41G>A missense_variant N R14H 1.00e+0 B.1.634
V5759 *4349C>T downstream_gene_variant S None 1.00e+0 B.1.634
V5848 90C>T synonymous_variant ORF1ab_pp1a G30G 1.00e+0 B.1.634
V4384 136C>T missense_variant ORF3a L46F 1.00e+0 BA.2.10.4
V482 1328C>T missense_variant ORF1ab_pp1a S443F 1.00e+0 BA.2.10.4
V194 252_254delTAT disruptive_inframe_deletion ORF1ab_pp1a M85del 1.00e+0 BA.2.25.1
V5730 *4316A>G downstream_gene_variant S None 7.06e-1 BA.2.3.5
V260 421_429delAAGTCATTT conservative_inframe_deletion ORF1ab_pp1a K141_F143del 7.05e-1 BA.2.59
V6753 6441C>T synonymous_variant ORF1ab_pp1a N2147N 1.00e+0 BA.2.59
V2826 16556T>C missense_variant ORF1ab_pp1ab I5519T 1.00e+0 BA.2.75.6
V6057 1362C>T synonymous_variant ORF1ab_pp1a L454L 1.00e+0 BA.2.75.6
V7099 9267C>T synonymous_variant ORF1ab_pp1a F3089F 1.00e+0 BA.2.75.6
V7163 9729C>T synonymous_variant ORF1ab_pp1a N3243N 1.00e+0 BA.2.75.6
V8446 19698G>T synonymous_variant ORF1ab_pp1ab T6566T 7.05e-1 BA.2.75.6
V9170 186C>T synonymous_variant ORF3a I62I 1.00e+0 BA.2.75.6
V4213 3427C>T missense_variant S P1143S 8.93e-1 BA.2.79
V4438 232C>T missense_variant ORF3a H78Y 7.04e-1 BA.2.79
V5160 200C>T missense_variant ORF8 S67F 7.04e-1 BA.2.79
V5567 951G>A missense_variant N M317I 1.00e+0 BA.2.79
V5602 1097C>T missense_variant N T366I 7.04e-1 BA.2.79
V8178 17619C>T synonymous_variant ORF1ab_pp1ab T5873T 1.00e+0 BA.4.1.10
V8386 19179A>G synonymous_variant ORF1ab_pp1ab L6393L 8.42e-1 BA.4.1.10
V5732 *4317G>T downstream_gene_variant S None 7.06e-1 BA.5.2.30
V5156 197_199delGTT disruptive_inframe_deletion ORF8 G66_S67delinsA 7.87e-1 BA.5.2.37
V8043 16668A>G synonymous_variant ORF1ab_pp1ab V5556V 7.98e-1 BA.5.2.37
V2568 13952C>T missense_variant ORF1ab_pp1ab T4651I 7.04e-1 BC.2
V1203 4628C>T missense_variant ORF1ab_pp1a T1543I 1.00e+0 BE.1.4.2
V4485 328G>T missense_variant ORF3a A110S 1.00e+0 BE.1.4.2
V6771 6631C>T synonymous_variant ORF1ab_pp1a L2211L 1.00e+0 BE.1.4.2
V6696 6078T>C synonymous_variant ORF1ab_pp1a D2026D 9.34e-1 BE.6
V2591 14132C>T missense_variant ORF1ab_pp1ab T4711I 8.15e-1 BF.1.1
V1401 5993C>T missense_variant ORF1ab_pp1a T1998I 7.06e-1 BQ.1.19
V2576 13993T>C missense_variant ORF1ab_pp1ab Y4665H -8.15e-1 BQ.1.4
V3969 1841A>G missense_variant S D614G -1.00e+0 BQ.1.4
V4663 26C>T missense_variant E T9I -6.30e-1 BQ.1.4
V6254 2689T>C synonymous_variant ORF1ab_pp1a L897L -8.15e-1 BQ.1.4
V9171 192C>T synonymous_variant ORF3a T64T -1.00e+0 BQ.1.4
V3000 17815G>T missense_variant ORF1ab_pp1ab V5939L 1.00e+0 BV.1
V4452 277C>T missense_variant ORF3a H93Y 8.15e-1 BV.1
V8399 19290C>T synonymous_variant ORF1ab_pp1ab G6430G 1.00e+0 BV.1
V1058 3638C>T missense_variant ORF1ab_pp1a P1213L 1.00e+0 C.14
V1260 4913C>T missense_variant ORF1ab_pp1a T1638I 1.00e+0 C.14
V1281 5061G>T missense_variant ORF1ab_pp1a E1687D 7.06e-1 C.14
V1951 9428C>T missense_variant ORF1ab_pp1a A3143V 1.00e+0 C.14
V2145 10970C>T missense_variant ORF1ab_pp1a A3657V 1.00e+0 C.14
V2160 11022_11030delGTCTGGTTT disruptive_inframe_deletion ORF1ab_pp1a L3674_G3676del 1.00e+0 C.14
V2608 14312C>T missense_variant ORF1ab_pp1ab A4771V 1.00e+0 C.14
V2789 16202C>T missense_variant ORF1ab_pp1ab P5401L 1.00e+0 C.14
V3572 190T>C missense_variant S W64R 1.00e+0 C.14
V3616 293C>T missense_variant S S98F 1.00e+0 C.14
V3626 407G>T missense_variant S C136F 1.00e+0 C.14
V3642 431A>C missense_variant S Y144S 1.00e+0 C.14
V3717 570G>T missense_variant S R190S 1.00e+0 C.14
V3820 1016G>A missense_variant S G339D 1.00e+0 C.14
V3884 1354C>A missense_variant S L452M 1.00e+0 C.14
V3895 1426G>A missense_variant S G476S 1.00e+0 C.14
V3997 1963C>T missense_variant S H655Y 1.00e+0 C.14
V4028 2051C>T missense_variant S A684V 7.06e-1 C.14
V4111 2576C>A missense_variant S T859N 1.00e+0 C.14
V4122 2695G>T missense_variant S A899S 1.00e+0 C.14
V445 1192C>T missense_variant ORF1ab_pp1a R398C 1.00e+0 C.14
V4619 760G>A missense_variant ORF3a G254R 7.06e-1 C.14
V4717 5C>T missense_variant M A2V 1.00e+0 C.14
V4760 245T>C missense_variant M I82T 1.00e+0 C.14
V4939 226C>T stop_gained ORF7a Q76* 1.00e+0 C.14
V5325 109T>C missense_variant N S37P 1.00e+0 C.14
V5735 *4322G>A downstream_gene_variant S None 1.00e+0 C.14
V5951 630A>G synonymous_variant ORF1ab_pp1a K210K 1.00e+0 C.14
V6023 1122C>T synonymous_variant ORF1ab_pp1a H374H 1.00e+0 C.14
V6179 2197C>T synonymous_variant ORF1ab_pp1a L733L 1.00e+0 C.14
V6794 6816C>T synonymous_variant ORF1ab_pp1a N2272N 1.00e+0 C.14
V7102 9294C>T synonymous_variant ORF1ab_pp1a Y3098Y 1.00e+0 C.14
V7274 10620T>C synonymous_variant ORF1ab_pp1a N3540N 1.00e+0 C.14
V7353 11388C>T synonymous_variant ORF1ab_pp1a L3796L 1.00e+0 C.14
V8137 17358A>G synonymous_variant ORF1ab_pp1ab K5786K 1.00e+0 C.14
V8626 60C>T synonymous_variant S T20T 1.00e+0 C.14
V8834 1623C>T synonymous_variant S F541F 1.00e+0 C.14
V9248 759C>T synonymous_variant ORF3a S253S 1.00e+0 C.14
V9296 84C>T synonymous_variant M F28F 1.00e+0 C.14
V9503 126C>T synonymous_variant ORF7b H42H 1.00e+0 C.14
V9580 105G>A synonymous_variant N A35A 1.00e+0 C.14
V3192 18956C>T missense_variant ORF1ab_pp1ab A6319V 1.00e+0 C.18
V5644 1204G>T missense_variant N D402Y 1.00e+0 C.18
V6825 7059T>C synonymous_variant ORF1ab_pp1a Y2353Y 8.14e-1 C.18
V7368 11482C>T synonymous_variant ORF1ab_pp1a L3828L 7.05e-1 C.18
V1932 9256C>T missense_variant ORF1ab_pp1a L3086F 7.06e-1 C.1
V3454 20873A>G missense_variant ORF1ab_pp1ab K6958R 1.00e+0 C.1
V4884 101C>T missense_variant ORF7a P34L 7.06e-1 C.1
V5134 161C>T missense_variant ORF8 S54L 1.00e+0 C.1
V6415 3969C>T synonymous_variant ORF1ab_pp1a D1323D 1.00e+0 C.1
V123 70C>T missense_variant ORF1ab_pp1a R24C 8.14e-1 C.23
V222 329A>G missense_variant ORF1ab_pp1a H110R 8.14e-1 C.23
V3530 52C>T missense_variant S L18F 1.00e+0 C.23
V6517 4734C>T synonymous_variant ORF1ab_pp1a N1578N 8.14e-1 C.23
V9582 105G>T synonymous_variant N A35A 1.00e+0 C.23
V5293 71C>T missense_variant N T24I 1.00e+0 CA.2
V5340 187G>T missense_variant N D63Y 1.00e+0 CA.2
V561 1648C>T missense_variant ORF1ab_pp1a R550C 1.00e+0 CA.2
V6521 4743G>T synonymous_variant ORF1ab_pp1a T1581T 1.00e+0 CA.2
V3387 20314G>T missense_variant ORF1ab_pp1ab V6772L 1.00e+0 CM.4.1
V5951 630A>G synonymous_variant ORF1ab_pp1a K210K 1.00e+0 CM.4.1
V1171 4433C>T missense_variant ORF1ab_pp1a S1478F 8.15e-1 DQ.1
V3159 18755C>T missense_variant ORF1ab_pp1ab P6252L 1.00e+0 DQ.1
V6101 1695C>T synonymous_variant ORF1ab_pp1a A565A 1.00e+0 DQ.1
V6288 2976C>T synonymous_variant ORF1ab_pp1a D992D 1.00e+0 DQ.1
V5151 193G>T missense_variant ORF8 A65S 7.06e-1 Q.8
V6187 2244C>T synonymous_variant ORF1ab_pp1a P748P 7.06e-1 Q.8
V6687 6009T>C synonymous_variant ORF1ab_pp1a Y2003Y 7.06e-1 Q.8
V1629 7069C>T missense_variant ORF1ab_pp1a H2357Y 1.00e+0 W.3
V7232 10278C>T synonymous_variant ORF1ab_pp1a H3426H 6.32e-1 W.3
V9406 93C>T synonymous_variant ORF6 Y31Y 6.32e-1 W.3
V2953 17426C>T missense_variant ORF1ab_pp1ab S5809L 1.00e+0 XAG
V4868 48G>T missense_variant ORF7a E16D 1.00e+0 XAG
V4647 803C>T missense_variant ORF3a T268M 1.00e+0 XAH





Manual curation of mutation (6276C>T)-related literature from PubMed

The pubmed.mineR and pubmed-mapper were utilized for extracting literature from PubMed, followed by manual filtering.
Note: PubMed: (COVID-19 [Title/Abstract] OR SARS-COV-2 [Title/Abstract]) AND (DNA mutation [Title/Abstract] OR Protein mutation-1 letter [Title/Abstract] OR Protein mutation-3 letter [Title/Abstract]).

DNA level Protein level Paper title Journal name Publication year Pubmed ID