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The current mutation

ID: V8284
DNA: 18423C>T
Protein: C6141C
Position: 18687








COV2Var annotation categories







Summary information of mutation (18423C>T)

Basic Information about Mutation.

  Gene Information   Gene ID   GU280_gp01_pp1ab
  Gene Name   ORF1ab_pp1ab
  Gene Type   protein_coding
  Genome position   18687
  Reference genome   GenBank ID: NC_045512.2
  Mutation type   synonymous_variant
  DNA Level   DNA Mutation: 18423C>T
  Ref Seq: C
  Mut Seq: T
  Protein Level   Protein 1-letter Mutation: C6141C
  Protein 3-letter Mutation: Cys6141Cys

Overview of the genomic positions of Mutation.
Note: The annotated 12 genes were retrieved from GeneBank (Accession: NC_045512.2). "MP" represents genomic position of mutation.





Analyzing the distribution of mutation (18423C>T) across geographic regions, temporal trends, and lineages

The count of genome sequences harboring this mutation and its distribution across global regions offer insights into regional variations.
Note: The distribution of mutation across 218 geographical regions. Color representation of genome sequence counts. The data is obtained from GISAID's metadata, specifically capturing the regional distribution of genomic sequences.



The dynamic count of genome sequences containing this mutation over time.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to the respective month. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.



For every time point represented in the graph above, identifying the top 3 lineages with the highest count of genome sequences carrying this mutation aids in pinpointing noteworthy lineages for further analysis.
Note: Users can filter the lineages by entering a "Year-Month" term in the search box. For example, entering 2020-01 will display lineages that appeared in January 2020. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.

Collection date Lineage Total lineage monthly counts Lineage-specific monthly counts Lineage-specific monthly frequency
2020-10 B.1.1.170 172 96 5.58e-1
2020-10 B.1.128 172 38 2.21e-1
2020-10 B.1.2 172 8 4.65e-2
2020-11 B.1.1.170 224 148 6.61e-1
2020-11 B.1 224 14 6.25e-2
2020-11 B.1.1 224 13 5.80e-2
2020-12 B.1.1.170 219 98 4.47e-1
2020-12 B.1.2 219 34 1.55e-1
2020-12 B.1 219 16 7.31e-2
2020-03 B 7 4 5.71e-1
2020-03 A.2 7 1 1.43e-1
2020-03 B.1 7 1 1.43e-1
2020-04 B.1 20 14 7.00e-1
2020-04 B.1.1.372 20 2 1.00e-1
2020-04 B 20 1 5.00e-2
2020-05 B.1 29 15 5.17e-1
2020-05 B.1.1.86 29 5 1.72e-1
2020-05 A 29 2 6.90e-2
2020-06 B.1.1.86 61 21 3.44e-1
2020-06 B.1.336 61 20 3.28e-1
2020-06 B.1 61 14 2.30e-1
2020-07 B.1.336 90 35 3.89e-1
2020-07 B.1.1.170 90 17 1.89e-1
2020-07 B.1 90 11 1.22e-1
2020-08 B.1.1.170 115 71 6.17e-1
2020-08 B.1.128 115 16 1.39e-1
2020-08 B.1 115 8 6.96e-2
2020-09 B.1.128 90 48 5.33e-1
2020-09 B.1.1.170 90 10 1.11e-1
2020-09 B.1.1 90 7 7.78e-2
2021-01 B.1.1.170 401 165 4.11e-1
2021-01 B.1.1.7 401 54 1.35e-1
2021-01 B.1.2 401 36 8.98e-2
2021-10 AY.4.2.1 4665 2607 5.59e-1
2021-10 AY.4.2 4665 1414 3.03e-1
2021-10 AY.122 4665 150 3.22e-2
2021-11 AY.4.2.1 11954 7687 6.43e-1
2021-11 AY.4.2 11954 3078 2.57e-1
2021-11 AY.122 11954 520 4.35e-2
2021-12 AY.4.2.1 8777 5600 6.38e-1
2021-12 AY.4.2 8777 2416 2.75e-1
2021-12 AY.122 8777 161 1.83e-2
2021-02 B.1.1.170 321 126 3.93e-1
2021-02 B.1.1.7 321 94 2.93e-1
2021-02 B.1.2 321 23 7.17e-2
2021-03 B.1.1.7 460 286 6.22e-1
2021-03 B.1.1.170 460 41 8.91e-2
2021-03 B.1 460 23 5.00e-2
2021-04 B.1.1.7 518 444 8.57e-1
2021-04 P.1.14 518 15 2.90e-2
2021-04 B.1.427 518 14 2.70e-2
2021-05 B.1.1.7 330 248 7.52e-1
2021-05 P.1 330 32 9.70e-2
2021-05 AY.122 330 8 2.42e-2
2021-06 B.1.1.7 314 208 6.62e-1
2021-06 P.1 314 36 1.15e-1
2021-06 AY.4.2 314 7 2.23e-2
2021-07 B.1.1.7 738 386 5.23e-1
2021-07 AY.4.2 738 61 8.27e-2
2021-07 AY.26 738 39 5.28e-2
2021-08 AY.4.2.1 1140 315 2.76e-1
2021-08 AY.4.2 1140 305 2.68e-1
2021-08 AY.26 1140 96 8.42e-2
2021-09 AY.4.2.1 2197 881 4.01e-1
2021-09 AY.4.2 2197 828 3.77e-1
2021-09 AY.3 2197 79 3.60e-2
2022-01 AY.4.2.1 773 233 3.01e-1
2022-01 AY.4.2 773 179 2.32e-1
2022-01 BA.1.1 773 114 1.47e-1
2022-10 BF.7 326 83 2.55e-1
2022-10 BA.5.2.9 326 59 1.81e-1
2022-10 BA.5 326 15 4.60e-2
2022-11 BF.7 242 66 2.73e-1
2022-11 BF.11 242 15 6.20e-2
2022-11 BQ.1.1 242 14 5.79e-2
2022-12 BQ.1.1 285 95 3.33e-1
2022-12 BF.7 285 54 1.89e-1
2022-12 BQ.1.12 285 14 4.91e-2
2022-02 BA.1.1 473 199 4.21e-1
2022-02 BA.2 473 77 1.63e-1
2022-02 BA.1 473 47 9.94e-2
2022-03 BA.2 357 202 5.66e-1
2022-03 BA.1.1 357 73 2.04e-1
2022-03 BA.1 357 13 3.64e-2
2022-04 BA.2 320 217 6.78e-1
2022-04 BA.2.3 320 35 1.09e-1
2022-04 BA.2.9 320 21 6.56e-2
2022-05 BA.2 280 204 7.29e-1
2022-05 BA.2.3 280 38 1.36e-1
2022-05 BA.2.9 280 14 5.00e-2
2022-06 BA.2 119 42 3.53e-1
2022-06 BA.2.3 119 15 1.26e-1
2022-06 BA.2.3.1 119 7 5.88e-2
2022-07 BA.5.2.20 139 13 9.35e-2
2022-07 BA.2 139 11 7.91e-2
2022-07 BA.4.6 139 11 7.91e-2
2022-08 BA.5.1.23 183 24 1.31e-1
2022-08 BF.7 183 21 1.15e-1
2022-08 BA.5.2.20 183 15 8.20e-2
2022-09 BF.7 192 45 2.34e-1
2022-09 BA.5 192 26 1.35e-1
2022-09 BA.5.2.9 192 21 1.09e-1
2023-01 BQ.1.1 248 111 4.48e-1
2023-01 BF.7 248 16 6.45e-2
2023-01 BQ.1.1.10 248 15 6.05e-2
2023-02 BQ.1.1 50 12 2.40e-1
2023-02 XBB.1.5 50 10 2.00e-1
2023-02 BF.11 50 5 1.00e-1

The count of genome sequences and the frequency of this mutation in each lineage.
Note: Displaying mutation frequencies (>0.01) among 2,735 lineages. Mutation Count represents the count of sequences carrying this mutation. Users can filter the lineages by entering a search term in the search box. For example, entering "A.1" will display A.1 lineages. The data is obtained from GISAID's metadata, specifically capturing the lineage of genomic sequences. Mutation count: Count of sequences carrying this mutation.

Mutation ID Lineage Mutation frequency Mutation count Earliest lineage emergence Latest lineage emergence
V8284 AY.128 1.11e-2 8 2021-5-3 2022-1-15
V8284 AY.43.8 1.68e-2 62 2021-1-12 2022-2-15
V8284 AY.82 2.45e-2 14 2020-8-25 2021-12-31
V8284 AY.92 2.38e-2 100 2021-4-10 2022-2-18
V8284 B.1.1.170 9.94e-1 775 2020-7-19 2021-6-28
V8284 B.1.128 6.16e-2 104 2020-3-9 2021-1-13
V8284 B.1.470 1.29e-2 10 2020-4-9 2022-4-16
V8284 BA.2.9.7 1.41e-2 8 2022-4-11 2022-8-28
V8284 BA.5.1.8 2.38e-2 18 2022-5-13 2022-11-22
V8284 CP.1 2.13e-2 26 2022-1-5 2023-2-7
V8284 AY.114 2.93e-2 157 2021-4-28 2022-3-1
V8284 AY.4.2 9.92e-2 8298 2021-1-1 2022-6-26
V8284 AY.4.2.1 9.99e-1 17350 2020-12-21 2022-3-9
V8284 AE.5 9.76e-2 4 2020-6-28 2021-3-1
V8284 AY.42.1 3.89e-2 17 2021-7-12 2022-1-7
V8284 B.1.1.309 1.29e-2 2 2020-8-11 2020-11-19
V8284 B.1.1.385 1.08e-2 3 2020-9-11 2021-10-12
V8284 B.1.1.528 4.35e-2 7 2020-12-7 2022-7-5
V8284 B.1.177.34 9.29e-1 13 2020-12-6 2021-2-22
V8284 B.1.1.86 1.00e+0 26 2020-5-19 2020-6-25
V8284 B.1.192 4.67e-2 5 2020-4-21 2020-12-8
V8284 B.1.336 1.55e-1 63 2020-3-13 2021-2-6
V8284 B.1.538 3.49e-2 3 2020-5-16 2021-6-17
V8284 BA.5.10.1 1.21e-1 25 2022-8-2 2023-1-30
V8284 BV.2 1.34e-1 28 2022-6-4 2023-1-27
V8284 C.31 5.88e-2 4 2020-8-11 2021-3-24
V8284 XAS 2.13e-2 4 2022-4-12 2022-12-14
V8284 XBC.2 1.58e-1 3 2022-9-6 2023-2-10






Examining mutation (18423C>T) found in abundant sequences of non-human animal hosts

Exploring mutation presence across 35 non-human animal hosts for cross-species transmission.
Note: We retained the mutation that appear in at least three non-human animal hosts' sequences. The data is obtained from GISAID's metadata, specifically capturing the host of genomic sequences.

Animal host Lineage Source region Collection date Accession ID
Rhinolophus pusillus A Laos 2020-7-7 EPI_ISL_4302645
Neovison vison B.1.1.170 Denmark 2020-10-29 EPI_ISL_641399
Neovison vison B.1.1.170 Denmark 2020-10-26 EPI_ISL_641414
Neovison vison B.1.1.170 Denmark 2020-10-23 EPI_ISL_683215
Rhinolophus marshalli BA.1 Laos 2020-7-10 EPI_ISL_4302647
Rhinolophus malayanus BA.1 Laos 2020-7-5 EPI_ISL_4302644




Association between mutation (18423C>T) and patients of different ages, genders, and statuses

Note: The logistic regression model was employed to examine changes in patient data before and after the mutation. The logistic regression model was conducted using the glm function in R. The data is obtained from GISAID's metadata, specifically capturing the patient status, gender, and age of genomic sequences.

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient statuses (ambulatory, deceased, homebound, hospitalized, mild, and recovered) based on GISAID classifications. In the analysis exploring the association between mutation and patient status, the model included mutation, patient status, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient status Ambulatory -1.62e+1 1.04e+3 -1.56e-2 9.88e-1 Decrease
Deceased 1.72e+0 4.74e-1 3.63e+0 2.86e-4 Increase
Homebound -1.96e+1 6.03e+3 -3.25e-3 9.97e-1 Decrease
Hospitalized -1.29e+0 3.94e-1 -3.28e+0 1.05e-3 Decrease
Mild -1.53e+1 1.76e+3 -8.69e-3 9.93e-1 Decrease
Recovered 1.44e+0 3.74e-1 3.84e+0 1.22e-4 Increase

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient age (0-17, 18-39, 40-64, 65-84, and 85+). In the analysis exploring the association between mutation and patient age, the model included mutation, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient age, years 0-17 -3.06e-1 1.12e-1 -2.73e+0 6.39e-3 Decrease
18-39 -1.39e-1 5.72e-2 -2.44e+0 1.48e-2 Decrease
40-64 1.09e-1 5.49e-2 1.98e+0 4.75e-2 Increase
65-84 2.86e-1 7.14e-2 4.00e+0 6.24e-5 Increase
>=85 -3.68e-1 1.58e-1 -2.33e+0 1.97e-2 Decrease

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient gender (male and female). In the analysis exploring the association between mutation and patient gender, the model included mutation, patient gender, patient age, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient gender Male -9.55e-2 5.40e-2 -1.77e+0 7.71e-2 Decrease





Investigating natural selection at mutation (18423C>T) site for genetic adaptation and diversity

Note: Investigating the occurrence of positive selection or negative selection at this mutation site reveals implications for genetic adaptation and diversity.

The MEME method within the HyPhy software was employed to analyze positive selection. MEME: episodic selection.
Note: List of sites found to be under episodic selection by MEME (p < 0.05). "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site P-value Lineage Method

The FEL method within the HyPhy software was employed to analyze both positive and negative selection. FEL: pervasive selection on samll datasets.
Note: List of sites found to be under pervasive selection by FEL (p < 0.05). A beta value greater than alpha signifies positive selection, while a beta value smaller than alpha signifies negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Alpha Beta P-value Lineage Method

The FUBAR method within the HyPhy software was employed to analyze both positive and negative selection. FUBAR: pervasive selection on large datasets.
Note: List of sites found to be under pervasive selection by FUBAR (prob > 0.95). A prob[alpha < beta] value exceeding 0.95 indicates positive selection, while a prob[alpha > beta] value exceeding 0.95 indicates negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Prob[alpha>beta] Prob[alpha<beta] Lineage Method




Alterations in protein physicochemical properties induced by mutation (18423C>T)

Understanding the alterations in protein physicochemical properties can reveal the evolutionary processes and adaptive changes of viruses
Note: ProtParam software was used for the analysis of physicochemical properties. Significant change threshold: A change exceeding 10% compared to the reference is considered a significant change. "GRAVY" is an abbreviation for "grand average of hydropathicity".

Group Protein name Molecular weight Theoretical PI Extinction coefficients Aliphatic index GRAVY




Alterations in protein stability induced by mutation (18423C>T)

The impact of mutations on protein stability directly or indirectly affects the biological characteristics, adaptability, and transmission capacity of the virus
Note: iMutant 2.0 was utilized to analyze the effects of mutations on protein stability. pH 7 and a temperature of 25°C are employed to replicate the in vitro environment. pH 7.4 and a temperature of 37°C are utilized to simulate the in vivo environment.

Mutation Protein name Mutation type Position ΔDDG Stability pH Temperature Condition




Impact on protein function induced by mutation (18423C>T)

The impact of mutations on protein function
Note: The MutPred2 software was used to predict the pathogenicity of a mutation and gives the molecular mechanism of pathogenicity. A score above 0.5 indicates an increased likelihood of pathogenicity. "Pr" is the abbreviation for "proportion. P" is the abbreviation for "p-value.

Mutation Protein name Mutation type Score Molecular mechanisms




Exploring mutation (18423C>T) distribution within intrinsically disordered protein regions

Intrinsically Disordered Proteins (IDPs) which refers to protein regions that have no unique 3D structure. In viral proteins, mutations in the disordered regions s are critical for immune evasion and antibody escape, suggesting potential additional implications for vaccines and monoclonal therapeutic strategies.
Note: The iupred3 software was utilized for analyzing IDPs. A score greater than 0.5 is considered indicative of an IDP. In the plot, "POS" represents the position of the mutation.





Alterations in enzyme cleavage sites induced by mutation (18423C>T)

Exploring the impact of mutations on the cleavage sites of 28 enzymes.
Note: The PeptideCutter software was used for detecting enzymes cleavage sites. The increased enzymes cleavage sites refer to the cleavage sites in the mutated protein that are added compared to the reference protein. Conversely, the decreased enzymes cleavage sites indicate the cleavage sites in the mutated protein that are reduced compared to the reference protein.

Mutation Protein name Genome position Enzyme name Increased cleavage sites Decreased cleavage sites




Impact of spike protein mutation (18423C>T) on antigenicity and immunogenicity

Investigating the impact of mutations on antigenicity and immunogenicity carries important implications for vaccine design and our understanding of immune responses.
Note: An absolute change greater than 0.0102 (three times the median across sites) in antigenicity score is considered significant. An absolute changegreater than 0.2754 (three times the median across sites) in immunogenicity score is considered significant. The VaxiJen tool was utilized for antigenicity analysis. The IEDB tool was used for immunogenicity analysis. Antigens with a prediction score of more than 0.4 for this tool are considered candidate antigens. MHC I immunogenicity score >0, indicating a higher probability to stimulate an immune response.

Group Protein name Protein region Antigenicity score Immunogenicity score




Impact of mutation (18423C>T) on viral transmissibility by the affinity between RBD and ACE2 receptor

Unraveling the impact of mutations on the interaction between the receptor binding domain (RBD) and ACE2 receptor using deep mutational scanning (DMS) experimental data to gain insights into their effects on viral transmissibility.
Note: The ΔBinding affinity represents the disparity between the binding affinity of a mutation and the reference binding affinity. A positive Δbinding affinity value (Δlog10(KD,app) > 0) signifies an increased affinity between RBD and ACE2 receptor due to the mutation. Conversely, a negative value (Δlog10(KD,app) < 0) indicates a reduced affinity between RBD and ACE2 receptor caused by the mutation. A p-value smaller than 0.05 indicates significance. "Ave mut bind" represents the average binding affinity of this mutation. "Ave ref bind" refers to the average binding affinity at a site without any mutation (reference binding affinity).

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Mutation Protein name Protein region Mutation Position Ave mut bind Ave ref bind ΔBinding affinity P-value Image


The interface between the receptor binding domain (RBD) and ACE2 receptor is depicted in the crystal structure 6JM0.
Note: The structure 6M0J encompasses the RBD range of 333 to 526. The binding sites (403-406, 408, 417, 439, 445-447, 449, 453, 455-456, 473-478, 484-498, and 500-506) on the RBD that interface with ACE2 are indicated in magenta. The binding sites on the RBD that have been identified through the interface footprints experiment. The ACE2 binding sites within the interface are shown in cyan, representing residues within 5Å proximity to the RBD binding sites. The mutation within the RBD range of 333 to 526 is depicted in red.

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Impact of mutation (18423C>T) on immune escape by the affinity between RBD and antibody/serum

By utilizing experimental data from deep mutational scanning (DMS), we can uncover how mutations affect the interaction between the receptor binding domain (RBD) and antibodies/serum. This approach provides valuable insights into strategies for evading the host immune response.
Note: We considered a mutation to mediate strong escape if the escape score exceeded 0.1 (10% of the maximum score of 1). A total of 1,504 antibodies/serum data were collected for this analysis. "Condition name" refers to the name of the antibodies/serum. "Mut escape score" represents the escape score of the mutation in that specific condition. "Avg mut escape score" indicates the average escape score of the mutation site in that condition, considering the occurrence of this mutation and other mutations. Class 1 antibodies bind to an epitope only in the RBD “up” conformation, and are the most abundant. Class 2 antibodies bind to the RBD both in “up” and “down” conformations. Class 3 and class 4 antibodies both bind outside the ACE2 binding site. Class 3 antibodies bind the RBD in both the open and closed conformation, while class 4 antibodies bind only in the open conformation.

Mutation Condition name Condition type Condition subtype Condition year Mut escape score Avg mut escape score




Investigating the co-mutation patterns of mutation (18423C>T) across 2,735 viral lineages

Investigating the co-mutation patterns of SARS-CoV-2 across 2,735 viral lineages to unravel the cooperative effects of different mutations. In biological research, correlation analysis of mutation sites helps us understand whether there is a close relationship or interaction between certain mutations.
Note: The Spearman correlation coefficient is used to calculate the correlation between two mutations within each Pango lineage. Holm–Bonferroni method was used for multiple test adjustment. We retained mutation pairs with correlation values greater than 0.6 or less than -0.6 and Holm–Bonferroni corrected p-values less than 0.05.

Associated mutation ID DNA mutation Mutation type Protein name Protein mutation correlation coefficient Lineage
V6251 2679G>A synonymous_variant ORF1ab_pp1a L893L 6.25e-1 AY.100
V5663 -17C>T upstream_gene_variant ORF10 None 6.21e-1 AY.122
V6075 1515C>T synonymous_variant ORF1ab_pp1a S505S 8.59e-1 AY.122
V3984 1895C>A missense_variant S T632N 9.06e-1 AY.26
V3484 21040C>A missense_variant ORF1ab_pp1ab R7014S 8.75e-1 AY.4.2
V3486 21041G>A missense_variant ORF1ab_pp1ab R7014H 8.86e-1 AY.4.2
V7889 15456C>T synonymous_variant ORF1ab_pp1ab D5152D 9.88e-1 AY.4.2
V7861 15216C>T synonymous_variant ORF1ab_pp1ab T5072T 1.00e+0 A.2
V4327 64G>A missense_variant ORF3a D22N 8.16e-1 A
V1302 5279C>T missense_variant ORF1ab_pp1a T1760I 1.00e+0 AY.105
V2230 11335A>G missense_variant ORF1ab_pp1a I3779V 7.06e-1 AY.105
V6633 5577C>T synonymous_variant ORF1ab_pp1a Y1859Y 1.00e+0 AY.105
V7339 11253C>T synonymous_variant ORF1ab_pp1a V3751V 1.00e+0 AY.105
V4180 3250G>T missense_variant S D1084Y 1.00e+0 AY.106
V4919 186_188delATT disruptive_inframe_deletion ORF7a Q62_F63delinsH 1.00e+0 AY.106
V5032 72G>T missense_variant ORF7b M24I 7.07e-1 AY.107
V7213 10131G>T synonymous_variant ORF1ab_pp1a V3377V 8.16e-1 AY.107
V260 421_429delAAGTCATTT conservative_inframe_deletion ORF1ab_pp1a K141_F143del 1.00e+0 AY.108
V6638 5619C>T synonymous_variant ORF1ab_pp1a Y1873Y 7.07e-1 AY.108
V6397 3828C>T synonymous_variant ORF1ab_pp1a I1276I 1.00e+0 AY.110
V5962 678G>A synonymous_variant ORF1ab_pp1a R226R 1.00e+0 AY.111
V2817 16477G>T missense_variant ORF1ab_pp1ab V5493F 7.07e-1 AY.112.2
V3015 17899A>G missense_variant ORF1ab_pp1ab I5967V 1.00e+0 AY.112.2
V5976 792C>T synonymous_variant ORF1ab_pp1a D264D 1.00e+0 AY.112.2
V5979 807A>G synonymous_variant ORF1ab_pp1a E269E 1.00e+0 AY.112.2
V3000 17815G>T missense_variant ORF1ab_pp1ab V5939L 9.67e-1 AY.114
V8324 18682C>T synonymous_variant ORF1ab_pp1ab L6228L 7.39e-1 AY.114
V8631 84C>T synonymous_variant S Y28Y 6.86e-1 AY.114
V8769 1095T>C synonymous_variant S Y365Y 7.22e-1 AY.114
V4185 3272G>T missense_variant S R1091L 7.07e-1 AY.117
V2990 17735C>T missense_variant ORF1ab_pp1ab T5912I 7.07e-1 AY.121.1
V3575 197A>G missense_variant S H66R 8.16e-1 AY.122.1
V6457 4305C>T synonymous_variant ORF1ab_pp1a I1435I 8.16e-1 AY.122.1
V6871 7512C>T synonymous_variant ORF1ab_pp1a Y2504Y 6.66e-1 AY.122.1
V1417 6055G>A missense_variant ORF1ab_pp1a V2019I 9.13e-1 AY.124
V5180 251T>C missense_variant ORF8 L84S 9.13e-1 AY.124
V6236 2571C>T synonymous_variant ORF1ab_pp1a C857C 7.07e-1 AY.124
V8393 19248C>T synonymous_variant ORF1ab_pp1ab Y6416Y 8.16e-1 AY.124
V1304 5284C>T missense_variant ORF1ab_pp1a L1762F 9.35e-1 AY.128
V1388 5848C>T missense_variant ORF1ab_pp1a P1950S 9.35e-1 AY.128
V1607 6848C>T missense_variant ORF1ab_pp1a T2283I 9.35e-1 AY.128
V3166 18822G>T missense_variant ORF1ab_pp1ab K6274N 9.35e-1 AY.128
V4546 524C>T missense_variant ORF3a T175I 9.35e-1 AY.128
V6454 4278C>T synonymous_variant ORF1ab_pp1a T1426T 7.80e-1 AY.128
V1810 8390C>T missense_variant ORF1ab_pp1a S2797F 1.00e+0 AY.131
V2493 13466C>T missense_variant ORF1ab_pp1ab A4489V 1.00e+0 AY.131
V3091 18319G>A missense_variant ORF1ab_pp1ab V6107I 1.00e+0 AY.131
V4415 188T>C missense_variant ORF3a I63T 7.07e-1 AY.131
V4614 751G>T missense_variant ORF3a G251C 1.00e+0 AY.131
V7504 12516C>T synonymous_variant ORF1ab_pp1a Y4172Y 1.00e+0 AY.131
V8041 16653G>T synonymous_variant ORF1ab_pp1ab L5551L 7.07e-1 AY.131
V8624 33C>T synonymous_variant S V11V 1.00e+0 AY.131
V2148 10981A>G missense_variant ORF1ab_pp1a M3661V 8.16e-1 AY.134
V363 883G>T missense_variant ORF1ab_pp1a G295C 1.00e+0 AY.134
V4312 37G>T missense_variant ORF3a V13L 7.07e-1 AY.134
V4625 766G>A missense_variant ORF3a V256I 1.00e+0 AY.134
V7310 11001G>A synonymous_variant ORF1ab_pp1a L3667L 1.00e+0 AY.134
V1184 4544C>T missense_variant ORF1ab_pp1a S1515F 1.00e+0 AY.14
V2755 15812A>G missense_variant ORF1ab_pp1ab D5271G 1.00e+0 AY.14
V6580 5157T>C synonymous_variant ORF1ab_pp1a N1719N 1.00e+0 AY.14
V8440 19641T>C synonymous_variant ORF1ab_pp1ab H6547H 1.00e+0 AY.14
V7185 9891C>T synonymous_variant ORF1ab_pp1a D3297D 6.04e-1 AY.23
V9306 166C>T synonymous_variant M L56L 1.00e+0 AY.24
V666 2007G>T missense_variant ORF1ab_pp1a K669N 8.16e-1 AY.25.3
V6854 7368T>C synonymous_variant ORF1ab_pp1a D2456D 8.94e-1 AY.25.3
V7475 12204C>T synonymous_variant ORF1ab_pp1a A4068A 1.00e+0 AY.25.3
V7578 13032C>T synonymous_variant ORF1ab_pp1a D4344D 8.94e-1 AY.25.3
V9312 198G>T synonymous_variant M V66V 7.70e-1 AY.3.1
V2795 16264G>T missense_variant ORF1ab_pp1ab V5422F 1.00e+0 AY.33.2
V5847 81C>T synonymous_variant ORF1ab_pp1a L27L 6.31e-1 AY.33
V7735 14286A>G synonymous_variant ORF1ab_pp1ab E4762E 6.92e-1 AY.33
V9156 117C>T synonymous_variant ORF3a A39A 6.39e-1 AY.33
V1414 6047C>T missense_variant ORF1ab_pp1a T2016I 1.00e+0 AY.3.4
V2100 10733G>A missense_variant ORF1ab_pp1a G3578D 8.66e-1 AY.39.1
V616 1826C>T missense_variant ORF1ab_pp1a T609I 7.75e-1 AY.39.1
V246 392C>T missense_variant ORF1ab_pp1a A131V 7.07e-1 AY.4.11
V3010 17867C>T missense_variant ORF1ab_pp1ab T5956I 7.07e-1 AY.43.2
V4462 295G>T missense_variant ORF3a A99S 7.07e-1 AY.43.3
V4485 328G>T missense_variant ORF3a A110S 7.07e-1 AY.43.3
V4918 184C>T stop_gained ORF7a Q62* 8.16e-1 AY.43.3
V7092 9219A>G synonymous_variant ORF1ab_pp1a E3073E 8.16e-1 AY.43.3
V9495 51G>T synonymous_variant ORF7b L17L 7.07e-1 AY.43.3
V1636 7121T>C missense_variant ORF1ab_pp1a M2374T 8.75e-1 AY.43.8
V281 496A>G missense_variant ORF1ab_pp1a S166G 9.50e-1 AY.43.8
V6106 1732C>T synonymous_variant ORF1ab_pp1a L578L 9.92e-1 AY.43.8
V6590 5241C>T synonymous_variant ORF1ab_pp1a V1747V 8.66e-1 AY.43.8
V9112 3645C>T synonymous_variant S Y1215Y 9.92e-1 AY.43.8
V2429 13043A>G missense_variant ORF1ab_pp1a K4348R 1.00e+0 AY.4.3
V3318 19969C>T missense_variant ORF1ab_pp1ab P6657S 7.07e-1 AY.4.3
V2069 10510C>T missense_variant ORF1ab_pp1a P3504S 1.00e+0 AY.45
V8893 2028T>C synonymous_variant S T676T 1.00e+0 AY.45
V1260 4913C>T missense_variant ORF1ab_pp1a T1638I 1.00e+0 AY.46.3
V201 256G>T missense_variant ORF1ab_pp1a V86F 1.00e+0 AY.46.3
V4872 66G>T missense_variant ORF7a E22D 1.00e+0 AY.46.3
V5602 1097C>T missense_variant N T366I 1.00e+0 AY.46.3
V6861 7423C>T synonymous_variant ORF1ab_pp1a L2475L 1.00e+0 AY.46.3
V826 2782G>T missense_variant ORF1ab_pp1a D928Y 1.00e+0 AY.46.3
V9619 294C>T synonymous_variant N D98D 1.00e+0 AY.46.3
V2422 12923T>C missense_variant ORF1ab_pp1a I4308T 6.32e-1 AY.4.6
V3378 20291C>T missense_variant ORF1ab_pp1ab S6764F 8.16e-1 AY.4.6
V6584 5208T>C synonymous_variant ORF1ab_pp1a F1736F 1.00e+0 AY.4.6
V1277 5036C>T missense_variant ORF1ab_pp1a A1679V 1.00e+0 AY.4.9
V4867 47A>G missense_variant ORF7a E16G 1.00e+0 AY.4.9
V9489 30T>C synonymous_variant ORF7b Y10Y 8.16e-1 AY.4.9
V1318 5381C>T missense_variant ORF1ab_pp1a T1794I 8.16e-1 AY.51
V2377 12528G>T missense_variant ORF1ab_pp1a K4176N 8.16e-1 AY.51
V7355 11400C>T synonymous_variant ORF1ab_pp1a L3800L 1.00e+0 AY.53
V7589 13119C>T synonymous_variant ORF1ab_pp1a C4373C 1.00e+0 AY.54
V1577 6740C>T missense_variant ORF1ab_pp1a T2247I 7.27e-1 AY.59
V3172 18853G>T missense_variant ORF1ab_pp1ab A6285S 7.60e-1 AY.59
V5527 736G>A missense_variant N V246I 7.60e-1 AY.59
V8471 19977T>C synonymous_variant ORF1ab_pp1ab S6659S 7.60e-1 AY.59
V5196 302G>T missense_variant ORF8 R101L 1.00e+0 AY.62
V8290 18459T>C synonymous_variant ORF1ab_pp1ab H6153H 1.00e+0 AY.62
V1346 5552C>T missense_variant ORF1ab_pp1a A1851V 7.07e-1 AY.65
V2929 17264C>T missense_variant ORF1ab_pp1ab T5755I 1.00e+0 AY.65
V2970 17533G>A missense_variant ORF1ab_pp1ab V5845I 7.07e-1 AY.65
V4866 41C>T missense_variant ORF7a T14I 1.00e+0 AY.65
V7346 11310C>T synonymous_variant ORF1ab_pp1a F3770F 7.07e-1 AY.65
V7530 12699A>G synonymous_variant ORF1ab_pp1a G4233G 1.00e+0 AY.65
V9141 60C>T synonymous_variant ORF3a I20I 1.00e+0 AY.65
V9744 906G>T synonymous_variant N P302P 1.00e+0 AY.65
V2554 13867G>A missense_variant ORF1ab_pp1ab V4623I 1.00e+0 AY.68
V4054 2193G>T missense_variant S M731I 1.00e+0 AY.68
V3580 203T>C missense_variant S I68T 7.07e-1 AY.7.2
V4839 181G>C missense_variant ORF6 D61H 1.00e+0 AY.7.2
V4841 182A>T missense_variant ORF6 D61V 1.00e+0 AY.7.2
V6371 3609C>T synonymous_variant ORF1ab_pp1a I1203I 8.16e-1 AY.7.2
V3811 922G>T missense_variant S V308L 9.05e-1 AY.82
V3259 19598C>T missense_variant ORF1ab_pp1ab A6533V 7.07e-1 AY.91
V3378 20291C>T missense_variant ORF1ab_pp1ab S6764F 1.00e+0 AY.91
V4273 3711G>T missense_variant S M1237I 1.00e+0 AY.91
V6584 5208T>C synonymous_variant ORF1ab_pp1a F1736F 1.00e+0 AY.91
V616 1826C>T missense_variant ORF1ab_pp1a T609I 8.15e-1 AY.9.2.2
V9568 48G>T synonymous_variant N T16T 6.77e-1 AY.9.2.2
V1929 9226C>T missense_variant ORF1ab_pp1a H3076Y 8.96e-1 AY.92
V2075 10550C>T missense_variant ORF1ab_pp1a S3517F 9.71e-1 AY.92
V3283 19735G>T missense_variant ORF1ab_pp1ab V6579F 9.49e-1 AY.92
V3413 20498C>T missense_variant ORF1ab_pp1ab T6833I 9.66e-1 AY.92
V5425 547T>A missense_variant N S183T 9.71e-1 AY.92
V619 1841C>T missense_variant ORF1ab_pp1a T614I 8.22e-1 AY.92
V6745 6396T>C synonymous_variant ORF1ab_pp1a S2132S 9.71e-1 AY.92
V8595 21000T>C synonymous_variant ORF1ab_pp1ab S7000S 9.65e-1 AY.92
V3144 18708G>T missense_variant ORF1ab_pp1ab K6236N 7.07e-1 AY.94
V4094 2500A>G missense_variant S I834V 7.07e-1 AY.94
V2390 12607G>A missense_variant ORF1ab_pp1a G4203S 7.07e-1 AY.98.1
V5004 366_*2delATT frameshift_variant&stop_lost&splice_region_variant ORF7a Ter122fs 6.79e-1 AY.99.2
V2900 17021C>T missense_variant ORF1ab_pp1ab S5674L 6.12e-1 AY.9
V7874 15324C>T synonymous_variant ORF1ab_pp1ab A5108A 6.12e-1 AY.9
V1426 6087G>T missense_variant ORF1ab_pp1a K2029N 7.28e-1 B.1.111
V2045 10340C>T missense_variant ORF1ab_pp1a P3447L 6.31e-1 B.1.111
V3682 526C>T missense_variant S L176F 8.94e-1 B.1.111
V5116 116T>C missense_variant ORF8 I39T 8.94e-1 B.1.111
V7035 8808C>T synonymous_variant ORF1ab_pp1a T2936T 8.94e-1 B.1.111
V8507 20280C>T synonymous_variant ORF1ab_pp1ab S6760S 8.94e-1 B.1.111
V7645 13623C>T synonymous_variant ORF1ab_pp1ab Y4541Y 7.74e-1 B.1.1.170
V2074 10528G>T missense_variant ORF1ab_pp1a V3510F 7.21e-1 B.1.1.214
V2020 10054C>T missense_variant ORF1ab_pp1a L3352F 7.07e-1 B.1.1.216
V8158 17481C>T synonymous_variant ORF1ab_pp1ab N5827N 7.07e-1 B.1.1.216
V862 2911C>T missense_variant ORF1ab_pp1a P971S 7.07e-1 B.1.1.216
V2828 16582G>T missense_variant ORF1ab_pp1ab D5528Y 7.30e-1 B.1.1.222
V1513 6373C>T missense_variant ORF1ab_pp1a H2125Y 1.00e+0 B.1.1.232
V324 664A>G missense_variant ORF1ab_pp1a I222V 1.00e+0 B.1.1.232
V5380 401C>T missense_variant N A134V 1.00e+0 B.1.1.232
V9288 27C>T synonymous_variant M T9T 1.00e+0 B.1.1.232
V4513 418C>T missense_variant ORF3a L140F 6.66e-1 B.1.1.25
V4851 13C>T missense_variant ORF7a L5F 8.16e-1 B.1.1.25
V5908 378C>T synonymous_variant ORF1ab_pp1a N126N 8.16e-1 B.1.1.25
V6978 8361C>T synonymous_variant ORF1ab_pp1a F2787F 8.16e-1 B.1.1.25
V9748 927C>T synonymous_variant N P309P 6.66e-1 B.1.1.25
V5247 5C>T missense_variant N S2F 6.66e-1 B.1.1.28
V5871 213C>T synonymous_variant ORF1ab_pp1a I71I 6.66e-1 B.1.1.28
V9018 3015G>A synonymous_variant S Q1005Q 6.66e-1 B.1.1.28
V4154 3058G>T missense_variant S A1020S 7.87e-1 B.1.128
V9406 93C>T synonymous_variant ORF6 Y31Y 9.32e-1 B.1.128
V7220 10185C>T synonymous_variant ORF1ab_pp1a P3395P 7.07e-1 B.1.1.306
V5368 307G>T missense_variant N D103Y 8.66e-1 B.1.1.311
V5458 605G>A missense_variant N S202N 8.66e-1 B.1.1.311
V8011 16383G>T synonymous_variant ORF1ab_pp1ab T5461T 7.07e-1 B.1.1.318
V688 2123C>T missense_variant ORF1ab_pp1a T708I 7.07e-1 B.1.1.348
V8535 20559C>T synonymous_variant ORF1ab_pp1ab N6853N 7.07e-1 B.1.1.348
V1081 3722C>T missense_variant ORF1ab_pp1a T1241I 8.66e-1 B.1.1.372
V2594 14143C>T missense_variant ORF1ab_pp1ab P4715S 8.66e-1 B.1.1.372
V9780 1062T>C synonymous_variant N N354N 1.00e+0 B.1.1.37
V4348 92C>T missense_variant ORF3a A31V 7.07e-1 B.1.1.420
V7195 9942C>T synonymous_variant ORF1ab_pp1a N3314N 7.07e-1 B.1.1.420
V2144 10965G>T missense_variant ORF1ab_pp1a M3655I 1.00e+0 B.1.1.432
V399 1009G>T missense_variant ORF1ab_pp1a V337F 1.00e+0 B.1.1.432
V441 1174G>T missense_variant ORF1ab_pp1a G392C 1.00e+0 B.1.1.432
V710 2229G>T missense_variant ORF1ab_pp1a E743D 1.00e+0 B.1.1.432
V8819 1491C>T synonymous_variant S F497F 1.00e+0 B.1.1.432
V9267 69C>T synonymous_variant E F23F 1.00e+0 B.1.1.432
V1119 3961C>T missense_variant ORF1ab_pp1a P1321S 7.07e-1 B.1.1.529
V1506 6341C>T missense_variant ORF1ab_pp1a S2114F 1.00e+0 B.1.177.16
V9773 1011C>T synonymous_variant N I337I 1.00e+0 B.1.177.16
V4893 116C>T missense_variant ORF7a T39I 7.07e-1 B.1.177.32
V6916 7842A>G synonymous_variant ORF1ab_pp1a A2614A 1.00e+0 B.1.177.32
V6953 8106G>A synonymous_variant ORF1ab_pp1a Q2702Q 1.00e+0 B.1.177.32
V7570 12984G>T synonymous_variant ORF1ab_pp1a L4328L 1.00e+0 B.1.177.32
V2073 10525C>T missense_variant ORF1ab_pp1a H3509Y 7.07e-1 B.1.177.44
V381 940C>A missense_variant ORF1ab_pp1a Q314K 1.00e+0 B.1.177.44
V6126 1854C>T synonymous_variant ORF1ab_pp1a G618G 1.00e+0 B.1.177.57
V3293 19769G>T missense_variant ORF1ab_pp1ab R6590L 6.10e-1 B.1.177.77
V7613 13290C>T synonymous_variant ORF1ab_pp1ab Y4430Y 7.06e-1 B.1.177.77
V1987 9838A>G missense_variant ORF1ab_pp1a M3280V 7.07e-1 B.1.177.82
V2501 13528C>T missense_variant ORF1ab_pp1ab R4510C 8.66e-1 B.1.177.82
V5790 *4367G>T downstream_gene_variant S None 6.02e-1 B.1.177.82
V6711 6130C>T synonymous_variant ORF1ab_pp1a L2044L 1.00e+0 B.1.177.82
V8001 16311C>T synonymous_variant ORF1ab_pp1ab D5437D 7.07e-1 B.1.232
V2400 12659C>T missense_variant ORF1ab_pp1a P4220L 8.20e-1 B.1.234
V9813 1245C>T synonymous_variant N D415D 8.29e-1 B.1.234
V8522 20439C>T synonymous_variant ORF1ab_pp1ab Y6813Y 1.00e+0 B.1.258.3
V9654 471C>T synonymous_variant N I157I 1.00e+0 B.1.258.3
V8501 20205G>A synonymous_variant ORF1ab_pp1ab A6735A 6.18e-1 B.1.258
V1014 3464G>A missense_variant ORF1ab_pp1a G1155D 8.16e-1 B.1.265
V5293 71C>T missense_variant N T24I 1.00e+0 B.1.311
V339 741G>T missense_variant ORF1ab_pp1a K247N 1.00e+0 B.1.324
V7317 11070G>T synonymous_variant ORF1ab_pp1a V3690V 1.00e+0 B.1.324
V8636 129C>T synonymous_variant S F43F 1.00e+0 B.1.324
V159 163G>A missense_variant ORF1ab_pp1a E55K 7.14e-1 B.1.351
V2664 14948C>T missense_variant ORF1ab_pp1ab T4983I 7.14e-1 B.1.351
V3364 20197A>G missense_variant ORF1ab_pp1ab T6733A 6.12e-1 B.1.351
V2299 11906C>T missense_variant ORF1ab_pp1a A3969V 1.00e+0 B.1.398
V4498 377G>T missense_variant ORF3a R126M 1.00e+0 B.1.398
V5790 *4367G>T downstream_gene_variant S None 1.00e+0 B.1.398
V8964 2568C>T synonymous_variant S N856N 7.06e-1 B.1.398
V5764 *4352G>C downstream_gene_variant S None 1.00e+0 B.1.416
V7930 15717C>T synonymous_variant ORF1ab_pp1ab I5239I 1.00e+0 B.1.416
V4074 2353G>A missense_variant S V785I 7.07e-1 B.1.466.2
V8027 16542C>T synonymous_variant ORF1ab_pp1ab N5514N 7.07e-1 B.1.466.2
V8744 870C>T synonymous_variant S D290D 7.90e-1 B.1.466.2
V1370 5762C>A missense_variant ORF1ab_pp1a P1921Q 7.05e-1 B.1.470
V5067 10C>T missense_variant ORF8 L4F 9.48e-1 B.1.470
V7112 9414C>T synonymous_variant ORF1ab_pp1a F3138F 7.73e-1 B.1.470
V163 184C>T missense_variant ORF1ab_pp1a P62S 1.00e+0 B.1.497
V7272 10603C>T synonymous_variant ORF1ab_pp1a L3535L 1.00e+0 B.1.497
V6465 4359A>G synonymous_variant ORF1ab_pp1a V1453V 6.12e-1 B.1.517
V8318 18630C>T synonymous_variant ORF1ab_pp1ab C6210C 1.00e+0 B.1.525
V5206 337G>T missense_variant ORF8 D113Y 7.07e-1 B.1.560
V5569 956G>A missense_variant N R319H 7.07e-1 B.1.560
V8332 18747C>T synonymous_variant ORF1ab_pp1ab D6249D 7.07e-1 B.1.560
V3896 1430G>A missense_variant S S477N 8.24e-1 B.1.595
V5139 175G>T stop_gained ORF8 E59* 8.45e-1 B.1.595
V5920 441C>T synonymous_variant ORF1ab_pp1a D147D 9.52e-1 B.1.595
V6890 7671G>T synonymous_variant ORF1ab_pp1a A2557A 7.05e-1 B.1.595
V7066 8994A>G synonymous_variant ORF1ab_pp1a V2998V 9.55e-1 B.1.595
V7084 9165C>T synonymous_variant ORF1ab_pp1a I3055I 6.27e-1 B.1.595
V7126 9538C>T synonymous_variant ORF1ab_pp1a L3180L 9.01e-1 B.1.595
V9304 159C>T synonymous_variant M F53F 7.52e-1 B.1.595
V9640 420T>C synonymous_variant N N140N 9.16e-1 B.1.595
V2964 17485G>T missense_variant ORF1ab_pp1ab A5829S 1.00e+0 B.1.596
V7080 9132A>G synonymous_variant ORF1ab_pp1a S3044S 1.00e+0 B.1.596
V5983 829T>C synonymous_variant ORF1ab_pp1a L277L 7.07e-1 B.1.609
V6278 2865C>T synonymous_variant ORF1ab_pp1a Y955Y 7.07e-1 B.1.609
V6798 6840C>A synonymous_variant ORF1ab_pp1a T2280T 7.07e-1 B.1.609
V7017 8622A>G synonymous_variant ORF1ab_pp1a L2874L 7.07e-1 B.1.609
V7750 14358G>A synonymous_variant ORF1ab_pp1ab T4786T 7.07e-1 B.1.609
V3294 19783A>G missense_variant ORF1ab_pp1ab I6595V 7.20e-1 B.1.620
V8632 96C>T synonymous_variant S F32F 7.29e-1 B.1.620
V8200 17832T>C synonymous_variant ORF1ab_pp1ab H5944H 9.13e-1 B.1.637
V128 79C>T missense_variant ORF1ab_pp1a L27F 8.66e-1 B.6
V5619 1133A>T missense_variant N E378V 1.00e+0 B.6
V2841 16679G>T missense_variant ORF1ab_pp1ab S5560I 1.00e+0 BA.1.1.12
V6118 1803T>C synonymous_variant ORF1ab_pp1a I601I 1.00e+0 BA.1.1.12
V4696 -37_-35delTAT upstream_gene_variant M None 1.00e+0 BA.1.1.13
V9078 3444C>T synonymous_variant S F1148F 7.07e-1 BA.1.1.16
V6145 1980C>T synonymous_variant ORF1ab_pp1a V660V 7.07e-1 BA.1.14.1
V7427 11850C>T synonymous_variant ORF1ab_pp1a S3950S 1.00e+0 BA.1.1.6
V5539 794C>T missense_variant N T265I 7.07e-1 BA.1.9
V8105 17109C>T synonymous_variant ORF1ab_pp1ab A5703A 7.07e-1 BA.1.9
V173 227C>T missense_variant ORF1ab_pp1a A76V 7.07e-1 BA.2.12
V6367 3552C>T synonymous_variant ORF1ab_pp1a D1184D 7.07e-1 BA.2.12
V7723 14193A>G synonymous_variant ORF1ab_pp1ab P4731P 7.07e-1 BA.2.12
V2549 13855C>T missense_variant ORF1ab_pp1ab P4619S 9.35e-1 BA.2.18
V5709 76T>C missense_variant ORF10 Y26H 6.12e-1 BA.2.18
V9726 837A>G synonymous_variant N P279P 6.12e-1 BA.2.18
V1322 5425G>A missense_variant ORF1ab_pp1a A1809T 7.50e-1 BA.2.1
V9629 348G>A synonymous_variant N G116G 1.00e+0 BA.2.22
V1271 4976C>T missense_variant ORF1ab_pp1a P1659L 1.00e+0 BA.2.24
V2301 11915A>G missense_variant ORF1ab_pp1a D3972G 7.07e-1 BA.2.2
V5300 84G>T missense_variant N Q28H 7.07e-1 BA.2.2
V7241 10350C>T synonymous_variant ORF1ab_pp1a D3450D 7.07e-1 BA.2.2
V7504 12516C>T synonymous_variant ORF1ab_pp1a Y4172Y 7.07e-1 BA.2.3.17
V5865 177C>T synonymous_variant ORF1ab_pp1a G59G 8.57e-1 BA.2.3.1
V6562 5019C>T synonymous_variant ORF1ab_pp1a N1673N 8.13e-1 BA.2.3.1
V3708 553A>G missense_variant S N185D 7.07e-1 BA.2.40.1
V3221 19277T>C missense_variant ORF1ab_pp1ab M6426T 7.07e-1 BA.2.52
V6577 5127C>T synonymous_variant ORF1ab_pp1a N1709N 7.07e-1 BA.2.52
V384 953C>T missense_variant ORF1ab_pp1a S318L 7.07e-1 BA.2.5
V2958 17470C>T missense_variant ORF1ab_pp1ab L5824F 1.00e+0 BA.2.68
V8066 16854C>T synonymous_variant ORF1ab_pp1ab G5618G 1.00e+0 BA.2.68
V3086 18274G>T missense_variant ORF1ab_pp1ab V6092L 8.66e-1 BA.2.75.2
V8901 2049G>T synonymous_variant S R683R 8.66e-1 BA.2.75.2
V454 1208C>T missense_variant ORF1ab_pp1a T403I 7.07e-1 BA.2.75
V3616 293C>T missense_variant S S98F 7.07e-1 BA.2.76
V3080 18244C>T missense_variant ORF1ab_pp1ab L6082F 6.17e-1 BA.2.8
V2277 11788C>T missense_variant ORF1ab_pp1a L3930F 7.05e-1 BA.2.9.7
V3873 1332G>T missense_variant S K444N 6.10e-1 BA.2.9.7
V3825 1037G>T missense_variant S R346I 1.00e+0 BA.4.1.6
V5926 480C>T synonymous_variant ORF1ab_pp1a N160N 1.00e+0 BA.4.1.6
V7882 15393A>G synonymous_variant ORF1ab_pp1ab T5131T 1.00e+0 BA.4.1.6
V2149 10984C>T missense_variant ORF1ab_pp1a R3662C 7.07e-1 BA.4.6.5
V2253 11577G>T missense_variant ORF1ab_pp1a Q3859H 7.07e-1 BA.4.6.5
V6506 4656C>T synonymous_variant ORF1ab_pp1a T1552T 7.07e-1 BA.4.6.5
V6823 7053C>T synonymous_variant ORF1ab_pp1a F2351F 7.07e-1 BA.4.6.5
V2117 10829C>T missense_variant ORF1ab_pp1a A3610V 7.07e-1 BA.5.1.17
V3450 20846C>T missense_variant ORF1ab_pp1ab T6949I 7.07e-1 BA.5.1.17
V8952 2508A>G synonymous_variant S Q836Q 7.07e-1 BA.5.1.17
V5293 71C>T missense_variant N T24I 8.09e-1 BA.5.1.23
V4817 80G>T missense_variant ORF6 W27L 7.07e-1 BA.5.1.24
V5011 7G>T stop_gained ORF7b E3* 7.07e-1 BA.5.1.24
V1973 9628C>T missense_variant ORF1ab_pp1a L3210F 6.45e-1 BA.5.1.3
V4684 172G>C missense_variant E V58L 7.03e-1 BA.5.1.8
V7351 11379C>T synonymous_variant ORF1ab_pp1a Y3793Y 6.19e-1 BA.5.1.8
V1241 4790C>T missense_variant ORF1ab_pp1a T1597I 1.00e+0 BA.5.2.12
V1490 6274C>T missense_variant ORF1ab_pp1a H2092Y 7.07e-1 BA.5.2.19
V2023 10069G>A missense_variant ORF1ab_pp1a A3357T 7.07e-1 BA.5.2.19
V3824 1037G>C missense_variant S R346T 7.07e-1 BA.5.2.19
V6237 2577C>T synonymous_variant ORF1ab_pp1a A859A 7.07e-1 BA.5.2.19
V6821 7038C>T synonymous_variant ORF1ab_pp1a I2346I 7.07e-1 BA.5.2.19
V3994 1958C>T missense_variant S A653V 8.25e-1 BA.5.2.22
V7273 10605G>T synonymous_variant ORF1ab_pp1a L3535L 6.12e-1 BA.5.2.22
V888 2994G>T missense_variant ORF1ab_pp1a Q998H 6.12e-1 BA.5.2.22
V5192 290G>T missense_variant ORF8 S97I 7.07e-1 BA.5.2.27
V3956 1720G>T missense_variant S D574Y 7.07e-1 BA.5.2.2
V9208 444C>T synonymous_variant ORF3a C148C 7.07e-1 BA.5.2.2
V4544 521G>A missense_variant ORF3a G174D 7.07e-1 BA.5.2.31
V2048 10361C>T missense_variant ORF1ab_pp1a A3454V 1.00e+0 BA.5.2.36
V4657 -17C>T upstream_gene_variant E None 1.00e+0 BA.5.2.36
V5396 451C>T missense_variant N P151S 8.94e-1 BA.5.2.36
V8279 18393C>T synonymous_variant ORF1ab_pp1ab T6131T 1.00e+0 BA.5.2.36
V9157 123C>T synonymous_variant ORF3a L41L 1.00e+0 BA.5.2.36
V9783 1080C>T synonymous_variant N Y360Y 1.00e+0 BA.5.2.36
V3017 17902C>T missense_variant ORF1ab_pp1ab P5968S 6.79e-1 BA.5.2.6
V9752 939G>A synonymous_variant N A313A 8.77e-1 BA.5.2.6
V8147 17427A>G synonymous_variant ORF1ab_pp1ab S5809S 7.55e-1 BA.5.2.7
V6555 4974C>T synonymous_variant ORF1ab_pp1a Y1658Y 6.66e-1 BA.5.2.9
V7143 9633T>C synonymous_variant ORF1ab_pp1a Y3211Y 7.33e-1 BA.5.2.9
V8015 16411C>T synonymous_variant ORF1ab_pp1ab L5471L 7.07e-1 BA.5.3.1
V1862 8671G>A missense_variant ORF1ab_pp1a A2891T 7.07e-1 BA.5.5.1
V3785 770G>A missense_variant S G257D 7.07e-1 BA.5.5.1
V447 1196A>G missense_variant ORF1ab_pp1a K399R 7.07e-1 BA.5.5.1
V6584 5208T>C synonymous_variant ORF1ab_pp1a F1736F 7.07e-1 BA.5.5.1
V6782 6732C>T synonymous_variant ORF1ab_pp1a I2244I 7.07e-1 BA.5.5.1
V8471 19977T>C synonymous_variant ORF1ab_pp1ab S6659S 7.07e-1 BA.5.5.1
V8525 20472C>T synonymous_variant ORF1ab_pp1ab D6824D 7.07e-1 BA.5.5.1
V2160 11022_11030delGTCTGGTTT disruptive_inframe_deletion ORF1ab_pp1a L3674_G3676del 1.00e+0 BA.5.6.1
V371 905C>T missense_variant ORF1ab_pp1a S302F 1.00e+0 BA.5.6.1
V6299 3048T>C synonymous_variant ORF1ab_pp1a L1016L 1.00e+0 BA.5.6.1
V7397 11676C>T synonymous_variant ORF1ab_pp1a V3892V 1.00e+0 BA.5.6.1
V8267 18306C>T synonymous_variant ORF1ab_pp1ab L6102L 1.00e+0 BA.5.6.1
V3115 18481G>T missense_variant ORF1ab_pp1ab V6161F 6.71e-1 BA.5.9
V6182 2220C>T synonymous_variant ORF1ab_pp1a I740I 1.00e+0 BE.10
V667 2011A>G missense_variant ORF1ab_pp1a I671V 1.00e+0 BE.10
V7220 10185C>T synonymous_variant ORF1ab_pp1a P3395P 1.00e+0 BE.10
V5677 -3C>T upstream_gene_variant ORF10 None 7.07e-1 BE.1.1.1
V8158 17481C>T synonymous_variant ORF1ab_pp1ab N5827N 1.00e+0 BE.1.2.1
V6696 6078T>C synonymous_variant ORF1ab_pp1a D2026D 7.07e-1 BE.1.4
V4448 266C>T missense_variant ORF3a T89I 7.06e-1 BE.7
V4853 17T>C missense_variant ORF7a F6S 1.00e+0 BE.7
V6083 1588C>T synonymous_variant ORF1ab_pp1a L530L 1.00e+0 BE.7
V6182 2220C>T synonymous_variant ORF1ab_pp1a I740I 1.00e+0 BE.7
V6804 6897C>T synonymous_variant ORF1ab_pp1a D2299D 1.00e+0 BE.7
V1441 6136C>T missense_variant ORF1ab_pp1a P2046S 1.00e+0 BF.11.5
V3602 250C>A missense_variant S L84I 1.00e+0 BF.11.5
V2023 10069G>A missense_variant ORF1ab_pp1a A3357T 7.07e-1 BF.13
V3296 19792G>A missense_variant ORF1ab_pp1ab G6598S 7.07e-1 BF.13
V5734 *4321G>T downstream_gene_variant S None 1.00e+0 BF.13
V7127 9540G>A synonymous_variant ORF1ab_pp1a L3180L 7.07e-1 BF.13
V8970 2631G>T synonymous_variant S L877L 7.07e-1 BF.21
V8900 2049G>A synonymous_variant S R683R 8.16e-1 BF.28
V3336 20056C>T missense_variant ORF1ab_pp1ab H6686Y 8.16e-1 BF.2
V51 -83C>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 BF.7.15
V2012 10012C>T missense_variant ORF1ab_pp1a L3338F 6.32e-1 BF.7.6
V2821 16498C>T missense_variant ORF1ab_pp1ab L5500F 6.32e-1 BF.7.6
V3737 641G>T missense_variant S R214L 6.32e-1 BF.7.6
V5088 55G>T stop_gained ORF8 E19* 6.32e-1 BF.7.6
V5197 305G>T missense_variant ORF8 C102F 7.74e-1 BF.7.6
V9104 3591C>T synonymous_variant S L1197L 6.32e-1 BF.7.6
V5578 1001C>T missense_variant N T334I 8.33e-1 B
V307 610C>T missense_variant ORF1ab_pp1a L204F 1.00e+0 BG.5
V4240 3573G>T missense_variant S K1191N 1.00e+0 BL.1
V1840 8570T>C missense_variant ORF1ab_pp1a V2857A 7.07e-1 BM.1.1.1
V8766 1062C>T synonymous_variant S N354N 1.00e+0 BM.1.1.1
V1034 3544C>T missense_variant ORF1ab_pp1a L1182F 1.00e+0 BM.1.1.3
V4456 285G>T missense_variant ORF3a L95F 1.00e+0 BM.1.1.3
V6072 1488T>C synonymous_variant ORF1ab_pp1a Y496Y 7.07e-1 BM.1.1.3
V7062 8958C>T synonymous_variant ORF1ab_pp1a H2986H 1.00e+0 BM.1.1.3
V8470 19971C>T synonymous_variant ORF1ab_pp1ab P6657P 7.07e-1 BM.1.1.3
V8903 2076C>T synonymous_variant S I692I 7.07e-1 BM.1.1.3
V1279 5047C>T missense_variant ORF1ab_pp1a L1683F 6.53e-1 BN.1.1
V4151 3017C>T missense_variant S T1006I 6.11e-1 BN.1.1
V1692 7658C>T missense_variant ORF1ab_pp1a S2553F 6.32e-1 BN.1.3.1
V5081 32C>T missense_variant ORF8 T11I 6.32e-1 BN.1.3.1
V2277 11788C>T missense_variant ORF1ab_pp1a L3930F 1.00e+0 BN.1.5
V5961 675G>A synonymous_variant ORF1ab_pp1a K225K 1.00e+0 BN.1.5
V9141 60C>T synonymous_variant ORF3a I20I 1.00e+0 BN.1.5
V4456 285G>T missense_variant ORF3a L95F 9.01e-1 BN.1
V6072 1488T>C synonymous_variant ORF1ab_pp1a Y496Y 1.00e+0 BN.1
V7062 8958C>T synonymous_variant ORF1ab_pp1a H2986H 7.51e-1 BN.1
V7970 16098C>T synonymous_variant ORF1ab_pp1ab V5366V 1.00e+0 BN.1
V8903 2076C>T synonymous_variant S I692I 9.31e-1 BN.1
V9677 576C>T synonymous_variant N N192N 7.68e-1 BN.1
V6163 2130C>T synonymous_variant ORF1ab_pp1a V710V 6.80e-1 BQ.1.10
V6940 8028C>T synonymous_variant ORF1ab_pp1a T2676T 1.00e+0 BQ.1.1.10
V6644 5676T>C synonymous_variant ORF1ab_pp1a I1892I 6.32e-1 BQ.1.1.11
V6783 6735C>T synonymous_variant ORF1ab_pp1a Y2245Y 1.00e+0 BQ.1.1.15
V2049 10366G>A missense_variant ORF1ab_pp1a A3456T 1.00e+0 BQ.1.1.16
V5160 200C>T missense_variant ORF8 S67F 7.07e-1 BQ.1.1.16
V5451 595C>T missense_variant N P199S 1.00e+0 BQ.1.1.16
V64 -65T>C upstream_gene_variant ORF1ab_pp1a None 7.07e-1 BQ.1.1.16
V499 1358T>C missense_variant ORF1ab_pp1a I453T 6.66e-1 BQ.1.1.1
V9594 150G>A synonymous_variant N A50A 8.16e-1 BQ.1.1.1
V8843 1686C>T synonymous_variant S F562F 7.07e-1 BQ.1.11
V3663 455G>T missense_variant S W152L 7.97e-1 BQ.1.1.22
V572 1678C>T missense_variant ORF1ab_pp1a R560C 8.36e-1 BQ.1.1.22
V8801 1317C>T synonymous_variant S N439N 6.41e-1 BQ.1.1.22
V8834 1623C>T synonymous_variant S F541F 9.35e-1 BQ.1.1.22
V9139 24C>T synonymous_variant ORF3a F8F 7.07e-1 BQ.1.1.31
V9216 576A>G synonymous_variant ORF3a K192K 7.07e-1 BQ.1.1.32
V4298 3793C>T missense_variant S L1265F 6.12e-1 BQ.1.1.4
V3675 471C>A missense_variant S F157L 1.00e+0 BQ.1.1.8
V4304 14T>C missense_variant ORF3a M5T 7.07e-1 BQ.1.1.8
V6654 5760T>C synonymous_variant ORF1ab_pp1a Y1920Y 7.07e-1 BQ.1.18
V1231 4760C>T missense_variant ORF1ab_pp1a S1587L 7.07e-1 BQ.1.24
V326 671C>T missense_variant ORF1ab_pp1a T224I 7.07e-1 BQ.1.24
V2180 11090C>T missense_variant ORF1ab_pp1a A3697V 7.07e-1 BQ.1.25.1
V5670 -12C>T upstream_gene_variant ORF10 None 1.00e+0 BQ.1.25.1
V9220 597C>T synonymous_variant ORF3a D199D 7.07e-1 BQ.1.25.1
V2433 13070C>T missense_variant ORF1ab_pp1a A4357V 1.00e+0 BQ.1.9
V6687 6009T>C synonymous_variant ORF1ab_pp1a Y2003Y 7.07e-1 BQ.1.9
V676 2040G>T missense_variant ORF1ab_pp1a K680N 7.07e-1 BT.2
V3751 725_733delTTGCTTTAC disruptive_inframe_deletion S L242_L244del 7.07e-1 C.16
V3879 1337G>T missense_variant S G446V 1.00e+0 C.16
V4651 812C>T missense_variant ORF3a T271I 1.00e+0 C.16
V7881 15390C>T synonymous_variant ORF1ab_pp1ab D5130D 7.07e-1 C.16
V8618 21255A>G synonymous_variant ORF1ab_pp1ab R7085R 1.00e+0 CJ.1
V1626 7034C>T missense_variant ORF1ab_pp1a A2345V 7.88e-1 CN.1
V5519 712G>T missense_variant N G238C 7.88e-1 CN.1
V616 1826C>T missense_variant ORF1ab_pp1a T609I 6.46e-1 CP.1
V6342 3339C>T synonymous_variant ORF1ab_pp1a H1113H 9.81e-1 CP.1
V6460 4314T>A synonymous_variant ORF1ab_pp1a L1438L 9.39e-1 CP.1
V1512 6371C>T missense_variant ORF1ab_pp1a T2124I 1.00e+0 DL.1
V4837 170C>T missense_variant ORF6 P57L 6.54e-1 DL.1
V7963 16029C>T synonymous_variant ORF1ab_pp1ab C5343C 7.07e-1 P.1.10
V393 998C>T missense_variant ORF1ab_pp1a T333M 6.76e-1 P.1.15
V400 1016C>T missense_variant ORF1ab_pp1a A339V 6.76e-1 P.1.15
V4477 311C>A missense_variant ORF3a P104H 6.67e-1 P.2
V7266 10537C>T synonymous_variant ORF1ab_pp1a L3513L 8.16e-1 P.2
V1107 3871G>T missense_variant ORF1ab_pp1a V1291F 7.06e-1 P.3
V2072 10517C>T missense_variant ORF1ab_pp1a T3506I 7.06e-1 P.3
V3475 20956G>T missense_variant ORF1ab_pp1ab A6986S 7.06e-1 P.3
V5490 635G>T missense_variant N G212V 7.06e-1 P.3
V1732 7866G>T missense_variant ORF1ab_pp1a K2622N 1.00e+0 Q.2
V2366 12476C>T missense_variant ORF1ab_pp1a T4159I 1.00e+0 Q.2
V4846 -1C>T upstream_gene_variant ORF7a None 1.00e+0 Q.2
V8096 17040C>T synonymous_variant ORF1ab_pp1ab V5680V 1.00e+0 Q.2
V9673 546C>T synonymous_variant N A182A 7.07e-1 R.1
V5303 88_96delGGAGAACGC conservative_inframe_deletion N G30_R32del 1.00e+0 XBB.1.9.1
V7874 15324C>T synonymous_variant ORF1ab_pp1ab A5108A 1.00e+0 XBB.1.9.1
V4513 418C>T missense_variant ORF3a L140F 7.07e-1 XBB.2
V5545 817G>T missense_variant N A273S 7.07e-1 XBB.2
V4781 463C>T missense_variant M H155Y 1.00e+0 XBB
V5670 -12C>T upstream_gene_variant ORF10 None 1.00e+0 XBB
V7437 11895G>A synonymous_variant ORF1ab_pp1a E3965E 7.07e-1 XBB
V1306 5289G>T missense_variant ORF1ab_pp1a K1763N 1.00e+0 XBF
V6852 7344C>T synonymous_variant ORF1ab_pp1a H2448H 7.07e-1 XBF
V1670 7499C>T missense_variant ORF1ab_pp1a S2500F 7.06e-1 A.21
V3413 20498C>T missense_variant ORF1ab_pp1ab T6833I 7.06e-1 A.21
V3223 19278G>T missense_variant ORF1ab_pp1ab M6426I 8.55e-1 AE.5
V2791 16210A>G missense_variant ORF1ab_pp1ab S5404G 1.00e+0 AY.19
V242 370C>T missense_variant ORF1ab_pp1a R124C 8.01e-1 AY.42.1
V576 1682T>C missense_variant ORF1ab_pp1a V561A 8.01e-1 AY.42.1
V7247 10380C>T synonymous_variant ORF1ab_pp1a D3460D 1.00e+0 AY.42.1
V3663 455G>T missense_variant S W152L 7.05e-1 B.1.1.159
V5396 451C>T missense_variant N P151S 1.00e+0 B.1.1.159
V6505 4653C>T synonymous_variant ORF1ab_pp1a I1551I 7.05e-1 B.1.1.159
V283 509C>T missense_variant ORF1ab_pp1a T170I 1.00e+0 B.1.1.171
V4687 184G>T missense_variant E V62F 1.00e+0 B.1.1.171
V8175 17604C>T synonymous_variant ORF1ab_pp1ab V5868V 1.00e+0 B.1.1.171
V3275 19697C>T missense_variant ORF1ab_pp1ab T6566M 1.00e+0 B.1.1.241
V2135 10930C>T missense_variant ORF1ab_pp1a L3644F 1.00e+0 B.1.1.274
V846 2844G>T missense_variant ORF1ab_pp1a E948D 8.14e-1 B.1.1.309
V1290 5160G>T missense_variant ORF1ab_pp1a K1720N 1.00e+0 B.1.1.328
V6830 7128G>T synonymous_variant ORF1ab_pp1a P2376P 1.00e+0 B.1.1.328
V9758 954G>T synonymous_variant N S318S 1.00e+0 B.1.1.329
V1000 3421C>T missense_variant ORF1ab_pp1a H1141Y 1.00e+0 B.1.1.336
V2021 10058A>G missense_variant ORF1ab_pp1a K3353R 7.03e-1 B.1.1.336
V2485 13448A>G missense_variant ORF1ab_pp1ab K4483R 1.00e+0 B.1.1.336
V3383 20305G>T missense_variant ORF1ab_pp1ab V6769F 1.00e+0 B.1.1.336
V6869 7500C>T synonymous_variant ORF1ab_pp1a S2500S 1.00e+0 B.1.1.336
V3520 13C>T missense_variant S L5F 1.00e+0 B.1.1.383
V9368 480C>T synonymous_variant M D160D 1.00e+0 B.1.1.383
V739 2327C>T missense_variant ORF1ab_pp1a A776V 1.00e+0 B.1.1.385
V754 2394G>T missense_variant ORF1ab_pp1a K798N 1.00e+0 B.1.1.385
V9219 591A>G synonymous_variant ORF3a V197V 1.00e+0 B.1.1.397
V2711 15392C>T missense_variant ORF1ab_pp1ab T5131I 1.00e+0 B.1.1.409
V2996 17765C>T missense_variant ORF1ab_pp1ab A5922V 1.00e+0 B.1.1.409
V390 986C>T missense_variant ORF1ab_pp1a T329I 1.00e+0 B.1.1.409
V4202 3364G>T missense_variant S V1122L 1.00e+0 B.1.1.409
V4524 463G>T missense_variant ORF3a D155Y 1.00e+0 B.1.1.409
V4777 407G>A missense_variant M S136N 1.00e+0 B.1.1.409
V6779 6717C>T synonymous_variant ORF1ab_pp1a C2239C 1.00e+0 B.1.1.409
V7644 13596C>T synonymous_variant ORF1ab_pp1ab D4532D 1.00e+0 B.1.1.409
V8011 16383G>T synonymous_variant ORF1ab_pp1ab T5461T 1.00e+0 B.1.1.409
V8624 33C>T synonymous_variant S V11V 1.00e+0 B.1.1.409
V7692 13965G>A synonymous_variant ORF1ab_pp1ab K4655K 1.00e+0 B.1.1.528
V8374 19053C>T synonymous_variant ORF1ab_pp1ab F6351F 6.46e-1 B.1.1.528
V91 -34T>C upstream_gene_variant ORF1ab_pp1a None 6.46e-1 B.1.1.528
V3643 431A>T missense_variant S Y144F 1.00e+0 B.1.160.31
V5788 *4366C>T downstream_gene_variant S None 1.00e+0 B.1.160.31
V1219 4700C>T missense_variant ORF1ab_pp1a T1567I 1.00e+0 B.1.177.34
V1320 5407C>T missense_variant ORF1ab_pp1a P1803S -1.00e+0 B.1.177.34
V5031 61G>T missense_variant ORF7b V21F 1.00e+0 B.1.177.34
V89 -39G>A upstream_gene_variant ORF1ab_pp1a None -1.00e+0 B.1.177.34
V9322 279C>G synonymous_variant M L93L 1.00e+0 B.1.177.34
V9645 435C>T synonymous_variant N H145H 1.00e+0 B.1.177.34
V221 328C>T missense_variant ORF1ab_pp1a H110Y 1.00e+0 B.1.177.41
V304 589C>T missense_variant ORF1ab_pp1a P197S 6.23e-1 B.1.192
V4596 668C>T missense_variant ORF3a T223I 1.00e+0 B.1.192
V550 1619C>T missense_variant ORF1ab_pp1a A540V 7.67e-1 B.1.192
V9375 525G>A synonymous_variant M T175T 6.23e-1 B.1.192
V9567 48G>A synonymous_variant N T16T 6.23e-1 B.1.192
V1231 4760C>T missense_variant ORF1ab_pp1a S1587L 1.00e+0 B.1.293
V6178 2190C>T synonymous_variant ORF1ab_pp1a L730L 1.00e+0 B.1.293
V6479 4449T>C synonymous_variant ORF1ab_pp1a V1483V 1.00e+0 B.1.293
V2366 12476C>T missense_variant ORF1ab_pp1a T4159I 1.00e+0 B.1.304
V4107 2567A>G missense_variant S N856S 1.00e+0 B.1.304
V4366 119C>T missense_variant ORF3a S40L -1.00e+0 B.1.304
V1808 8386A>C missense_variant ORF1ab_pp1a M2796L 1.00e+0 B.1.335
V2559 13919C>T missense_variant ORF1ab_pp1ab T4640I 1.00e+0 B.1.335
V342 794C>T missense_variant ORF1ab_pp1a T265I -7.03e-1 B.1.335
V4263 3682G>T missense_variant S V1228L 1.00e+0 B.1.335
V4406 171G>T missense_variant ORF3a Q57H -7.03e-1 B.1.335
V1415 6052C>T missense_variant ORF1ab_pp1a P2018S 1.00e+0 B.1.463
V3559 86C>T missense_variant S T29I 1.00e+0 B.1.463
V1911 9095C>T missense_variant ORF1ab_pp1a T3032I 1.00e+0 B.1.473
V6489 4530C>T synonymous_variant ORF1ab_pp1a S1510S 1.00e+0 B.1.473
V1225 4742C>T missense_variant ORF1ab_pp1a T1581M 8.65e-1 B.1.480
V2455 13223C>T missense_variant ORF1ab_pp1ab A4408V 8.65e-1 B.1.480
V3620 335C>T missense_variant S S112L 1.00e+0 B.1.480
V4609 718C>T missense_variant ORF3a P240S 8.16e-1 B.1.480
V5705 68C>T missense_variant ORF10 S23F 8.65e-1 B.1.480
V7963 16029C>T synonymous_variant ORF1ab_pp1ab C5343C 1.00e+0 B.1.480
V8427 19563G>T synonymous_variant ORF1ab_pp1ab V6521V 8.65e-1 B.1.480
V2188 11152G>T missense_variant ORF1ab_pp1a V3718F 1.00e+0 B.1.538
V2337 12248C>T missense_variant ORF1ab_pp1a T4083M 1.00e+0 B.1.538
V4317 48G>T missense_variant ORF3a K16N 1.00e+0 B.1.538
V525 1519G>A missense_variant ORF1ab_pp1a G507S 1.00e+0 B.1.538
V6182 2220C>T synonymous_variant ORF1ab_pp1a I740I 1.00e+0 B.1.538
V6517 4734C>T synonymous_variant ORF1ab_pp1a N1578N 1.00e+0 B.1.538
V6630 5547C>T synonymous_variant ORF1ab_pp1a D1849D 1.00e+0 B.1.538
V6900 7752G>T synonymous_variant ORF1ab_pp1a A2584A 8.61e-1 B.1.538
V7921 15688C>T synonymous_variant ORF1ab_pp1ab L5230L 1.00e+0 B.1.538
V4586 650C>T missense_variant ORF3a T217I 1.00e+0 B.1.548
V6541 4902C>T synonymous_variant ORF1ab_pp1a Y1634Y 1.00e+0 B.1.548
V7698 14004G>A synonymous_variant ORF1ab_pp1ab T4668T 1.00e+0 B.1.548
V7994 16272C>T synonymous_variant ORF1ab_pp1ab S5424S 8.16e-1 BA.1.5
V8027 16542C>T synonymous_variant ORF1ab_pp1ab N5514N 8.16e-1 BA.1.5
V2037 10184C>A missense_variant ORF1ab_pp1a P3395H -7.06e-1 BA.2.4
V2214 11269G>A missense_variant ORF1ab_pp1a G3757S 1.00e+0 BA.2.4
V7219 10182G>A synonymous_variant ORF1ab_pp1a R3394R -7.06e-1 BA.2.4
V3413 20498C>T missense_variant ORF1ab_pp1ab T6833I 1.00e+0 BA.2.75.10
V8521 20415G>T synonymous_variant ORF1ab_pp1ab P6805P 1.00e+0 BA.2.75.10
V5313 97A>G missense_variant N S33G 7.03e-1 BA.3
V7110 9381G>A synonymous_variant ORF1ab_pp1a Q3127Q 7.03e-1 BA.3
V4483 322C>T missense_variant ORF3a L108F 1.00e+0 BA.5.10.1
V5198 308C>T missense_variant ORF8 S103L 7.20e-1 BA.5.10.1
V9207 435T>C synonymous_variant ORF3a Y145Y 1.00e+0 BA.5.10.1
V1982 9764C>T missense_variant ORF1ab_pp1a T3255I -7.05e-1 BA.5.6.3
V7282 10704C>T synonymous_variant ORF1ab_pp1a F3568F 1.00e+0 BA.5.6.3
V6182 2220C>T synonymous_variant ORF1ab_pp1a I740I 7.06e-1 BE.8
V6804 6897C>T synonymous_variant ORF1ab_pp1a D2299D 1.00e+0 BE.8
V8632 96C>T synonymous_variant S F32F 1.00e+0 BF.7.3
V1841 8576C>T missense_variant ORF1ab_pp1a T2859I 1.00e+0 BF.7.9
V9776 1023C>T synonymous_variant N D341D 1.00e+0 BF.7.9
V6108 1758C>T synonymous_variant ORF1ab_pp1a F586F 8.15e-1 BM.2
V2124 10855A>G missense_variant ORF1ab_pp1a I3619V 1.00e+0 BS.1.1
V2241 11485C>T missense_variant ORF1ab_pp1a L3829F -7.06e-1 BS.1.1
V2785 16154C>T missense_variant ORF1ab_pp1ab T5385I -7.06e-1 BS.1.1
V3987 1919C>T missense_variant S S640F -7.06e-1 BS.1.1
V5060 -5C>T upstream_gene_variant ORF8 None 1.00e+0 BS.1.1
V6370 3594A>G synonymous_variant ORF1ab_pp1a Q1198Q 1.00e+0 BS.1.1
V6778 6714T>G synonymous_variant ORF1ab_pp1a V2238V 1.00e+0 BS.1.1
V7437 11895G>A synonymous_variant ORF1ab_pp1a E3965E 1.00e+0 BS.1.1
V8551 20682C>T synonymous_variant ORF1ab_pp1ab V6894V -7.06e-1 BS.1.1
V9569 57A>G synonymous_variant N G19G 1.00e+0 BS.1.1
V3890 1380T>A missense_variant S N460K 8.94e-1 BV.2
V9654 471C>T synonymous_variant N I157I 8.94e-1 BV.2
V1807 8380C>T missense_variant ORF1ab_pp1a H2794Y 1.00e+0 C.13
V2038 10184C>T missense_variant ORF1ab_pp1a P3395L 1.00e+0 C.13
V1977 9670A>G missense_variant ORF1ab_pp1a T3224A 6.96e-1 C.31
V2228 11330A>G missense_variant ORF1ab_pp1a Q3777R 6.96e-1 C.31
V4462 295G>T missense_variant ORF3a A99S 1.00e+0 C.31
V53 -80C>T upstream_gene_variant ORF1ab_pp1a None 6.96e-1 C.31
V5872 216A>G synonymous_variant ORF1ab_pp1a K72K 1.00e+0 C.31
V6395 3819C>T synonymous_variant ORF1ab_pp1a D1273D 6.96e-1 C.31
V8782 1185C>T synonymous_variant S V395V 6.96e-1 C.31
V8878 1956G>T synonymous_variant S G652G 6.96e-1 C.31
V9680 594T>C synonymous_variant N T198T 1.00e+0 C.31
V7777 14523T>C synonymous_variant ORF1ab_pp1ab A4841A 7.06e-1 N.4
V8603 21078C>T synonymous_variant ORF1ab_pp1ab Y7026Y 7.06e-1 N.4
V9561 18C>T synonymous_variant N P6P 7.06e-1 N.4
V5677 -3C>T upstream_gene_variant ORF10 None 1.00e+0 P.4
V7348 11355C>T synonymous_variant ORF1ab_pp1a F3785F 1.00e+0 P.4
V9351 396G>T synonymous_variant M P132P 1.00e+0 P.4
V5663 -17C>T upstream_gene_variant ORF10 None 8.64e-1 XAS
V9598 159C>T synonymous_variant N F53F 8.12e-1 XAS
V3060 18131C>T missense_variant ORF1ab_pp1ab A6044V 1.00e+0 XBC.1
V7483 12294C>T synonymous_variant ORF1ab_pp1a I4098I 1.00e+0 XBC.1
V9737 876C>T synonymous_variant N I292I 1.00e+0 XBC.1
V6210 2397C>T synonymous_variant ORF1ab_pp1a Y799Y 6.37e-1 XBC.2





Manual curation of mutation (18423C>T)-related literature from PubMed

The pubmed.mineR and pubmed-mapper were utilized for extracting literature from PubMed, followed by manual filtering.
Note: PubMed: (COVID-19 [Title/Abstract] OR SARS-COV-2 [Title/Abstract]) AND (DNA mutation [Title/Abstract] OR Protein mutation-1 letter [Title/Abstract] OR Protein mutation-3 letter [Title/Abstract]).

DNA level Protein level Paper title Journal name Publication year Pubmed ID