Back to top

The current mutation

ID: V8823
DNA: 1524C>T
Protein: Y508Y
Position: 23086








COV2Var annotation categories







Summary information of mutation (1524C>T)

Basic Information about Mutation.

  Gene Information   Gene ID   GU280_gp02
  Gene Name   S
  Gene Type   protein_coding
  Genome position   23086
  Reference genome   GenBank ID: NC_045512.2
  Mutation type   synonymous_variant
  DNA Level   DNA Mutation: 1524C>T
  Ref Seq: C
  Mut Seq: T
  Protein Level   Protein 1-letter Mutation: Y508Y
  Protein 3-letter Mutation: Tyr508Tyr

Overview of the genomic positions of Mutation.
Note: The annotated 12 genes were retrieved from GeneBank (Accession: NC_045512.2). "MP" represents genomic position of mutation.





Analyzing the distribution of mutation (1524C>T) across geographic regions, temporal trends, and lineages

The count of genome sequences harboring this mutation and its distribution across global regions offer insights into regional variations.
Note: The distribution of mutation across 218 geographical regions. Color representation of genome sequence counts. The data is obtained from GISAID's metadata, specifically capturing the regional distribution of genomic sequences.



The dynamic count of genome sequences containing this mutation over time.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to the respective month. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.



For every time point represented in the graph above, identifying the top 3 lineages with the highest count of genome sequences carrying this mutation aids in pinpointing noteworthy lineages for further analysis.
Note: Users can filter the lineages by entering a "Year-Month" term in the search box. For example, entering 2020-01 will display lineages that appeared in January 2020. The data is obtained from GISAID's metadata, specifically capturing the collection date of genomic sequences.

Collection date Lineage Total lineage monthly counts Lineage-specific monthly counts Lineage-specific monthly frequency
2020-10 C.1 109 27 2.48e-1
2020-10 B.1.349 109 14 1.28e-1
2020-10 B.1.1.214 109 10 9.17e-2
2020-11 B.1.349 201 81 4.03e-1
2020-11 B.1.1.44 201 26 1.29e-1
2020-11 B.1 201 13 6.47e-2
2020-12 B.1.2 184 42 2.28e-1
2020-12 B.1.349 184 25 1.36e-1
2020-12 B.1.110.3 184 19 1.03e-1
2020-02 B.12 3 2 6.67e-1
2020-02 B.1.1.214 3 1 3.33e-1
2020-03 B.1.1 40 31 7.75e-1
2020-03 B.1 40 5 1.25e-1
2020-03 B.1.332 40 2 5.00e-2
2020-04 B.1.1 48 33 6.88e-1
2020-04 B.1 48 6 1.25e-1
2020-04 B.1.1.1 48 2 4.17e-2
2020-05 B.1.1 19 8 4.21e-1
2020-05 B.1 19 5 2.63e-1
2020-05 B.1.1.33 19 4 2.11e-1
2020-06 B.1.1 55 15 2.73e-1
2020-06 B.1.1.356 55 10 1.82e-1
2020-06 B.1 55 9 1.64e-1
2020-07 B.1.1.356 66 18 2.73e-1
2020-07 B.1 66 8 1.21e-1
2020-07 B.1.1 66 8 1.21e-1
2020-08 B.1.110.3 46 9 1.96e-1
2020-08 B.1 46 8 1.74e-1
2020-08 B.1.258 46 6 1.30e-1
2020-09 B.1.367 36 10 2.78e-1
2020-09 B.1.1.144 36 6 1.67e-1
2020-09 B.1.1 36 5 1.39e-1
2021-01 B.1.1.7 458 257 5.61e-1
2021-01 B.1.2 458 49 1.07e-1
2021-01 B.1.429 458 18 3.93e-2
2021-10 AY.4 1569 375 2.39e-1
2021-10 AY.66 1569 221 1.41e-1
2021-10 AY.122 1569 158 1.01e-1
2021-11 AY.66 2282 502 2.20e-1
2021-11 AY.4 2282 460 2.02e-1
2021-11 AY.122 2282 199 8.72e-2
2021-12 AY.4 1924 507 2.64e-1
2021-12 AY.122 1924 189 9.82e-2
2021-12 AY.66 1924 177 9.20e-2
2021-02 B.1.1.7 442 233 5.27e-1
2021-02 B.1.2 442 36 8.14e-2
2021-02 B.1.160 442 34 7.69e-2
2021-03 B.1.1.7 732 431 5.89e-1
2021-03 B.1.427 732 47 6.42e-2
2021-03 B.1.2 732 41 5.60e-2
2021-04 B.1.1.7 1055 802 7.60e-1
2021-04 B.1.1.519 1055 70 6.64e-2
2021-04 B.1.427 1055 43 4.08e-2
2021-05 B.1.1.7 928 786 8.47e-1
2021-05 B.1.429 928 27 2.91e-2
2021-05 B.1.427 928 22 2.37e-2
2021-06 B.1.1.7 692 491 7.10e-1
2021-06 AY.7 692 74 1.07e-1
2021-06 P.1 692 18 2.60e-2
2021-07 AY.100 771 142 1.84e-1
2021-07 AY.7 771 108 1.40e-1
2021-07 B.1.1.7 771 106 1.37e-1
2021-08 AY.100 1235 292 2.36e-1
2021-08 AY.64 1235 203 1.64e-1
2021-08 AY.44 1235 128 1.04e-1
2021-09 AY.122 1375 235 1.71e-1
2021-09 AY.64 1375 226 1.64e-1
2021-09 AY.100 1375 162 1.18e-1
2022-01 BA.1.1 856 214 2.50e-1
2022-01 BA.1.15 856 152 1.78e-1
2022-01 BA.1.17.2 856 110 1.29e-1
2022-10 BF.7 518 309 5.97e-1
2022-10 BQ.1.1.13 518 56 1.08e-1
2022-10 BF.10 518 18 3.47e-2
2022-11 BQ.1.1.13 848 401 4.73e-1
2022-11 BF.7 848 169 1.99e-1
2022-11 BF.5 848 44 5.19e-2
2022-12 BQ.1.1.13 1930 1419 7.35e-1
2022-12 BF.7 1930 90 4.66e-2
2022-12 BF.5 1930 54 2.80e-2
2022-02 BA.1.1 791 250 3.16e-1
2022-02 BA.1.17.2 791 230 2.91e-1
2022-02 BA.2 791 67 8.47e-2
2022-03 BA.2 770 248 3.22e-1
2022-03 BA.1.1 770 240 3.12e-1
2022-03 BA.1.17.2 770 116 1.51e-1
2022-04 BA.2 360 182 5.06e-1
2022-04 BA.2.9 360 51 1.42e-1
2022-04 BA.1.1 360 44 1.22e-1
2022-05 BA.2 323 209 6.47e-1
2022-05 BA.2.9 323 43 1.33e-1
2022-05 BA.2.29 323 20 6.19e-2
2022-06 BA.2 187 78 4.17e-1
2022-06 BA.2.3 187 23 1.23e-1
2022-06 BA.2.10 187 13 6.95e-2
2022-07 BF.10 168 17 1.01e-1
2022-07 BA.4.1 168 16 9.52e-2
2022-07 BA.4 168 10 5.95e-2
2022-08 BF.7 154 20 1.30e-1
2022-08 BA.5.1.23 154 12 7.79e-2
2022-08 BA.4.1 154 9 5.84e-2
2022-09 BF.7 268 148 5.52e-1
2022-09 BF.10 268 13 4.85e-2
2022-09 BA.5.1.23 268 10 3.73e-2
2023-01 BQ.1.1.13 1424 1089 7.65e-1
2023-01 CH.1.1 1424 47 3.30e-2
2023-01 BQ.1.1 1424 29 2.04e-2
2023-02 BQ.1.1.13 442 366 8.28e-1
2023-02 CH.1.1 442 20 4.52e-2
2023-02 XBB.1.5 442 9 2.04e-2

The count of genome sequences and the frequency of this mutation in each lineage.
Note: Displaying mutation frequencies (>0.01) among 2,735 lineages. Mutation Count represents the count of sequences carrying this mutation. Users can filter the lineages by entering a search term in the search box. For example, entering "A.1" will display A.1 lineages. The data is obtained from GISAID's metadata, specifically capturing the lineage of genomic sequences. Mutation count: Count of sequences carrying this mutation.

Mutation ID Lineage Mutation frequency Mutation count Earliest lineage emergence Latest lineage emergence
V8823 AY.116 1.94e-2 61 2021-2-1 2022-1-31
V8823 AY.121.1 2.67e-2 103 2021-1-2 2022-3-1
V8823 AY.4.4 1.53e-2 53 2021-1-19 2022-2-22
V8823 AY.64 4.28e-1 793 2021-4-4 2021-12-29
V8823 AY.66 4.71e-1 911 2021-1-7 2022-1-13
V8823 B.1.110.3 3.56e-2 54 2020-3-15 2022-3-30
V8823 B.1.1.170 2.95e-2 23 2020-7-19 2021-6-28
V8823 B.1.1.232 1.49e-2 8 2020-3-28 2021-8-4
V8823 B.1.258.14 1.03e-2 7 2020-10-6 2021-5-5
V8823 B.1.349 8.66e-2 122 2020-6-5 2021-8-21
V8823 B.1.367 1.20e-2 11 2020-7-13 2021-12-7
V8823 B.1.416.1 1.34e-2 8 2020-7-24 2021-3-18
V8823 B.1.517 2.50e-2 55 2020-4-26 2022-3-7
V8823 BA.2.3.17 1.76e-2 38 2022-1-11 2022-7-19
V8823 BA.5.1.26 1.54e-2 12 2022-6-8 2023-2-16
V8823 BE.10 1.33e-2 26 2022-1-12 2023-2-15
V8823 BF.7.6 1.06e-2 35 2022-2-21 2023-2-18
V8823 BQ.1.13 2.60e-2 77 2022-2-18 2023-2-21
V8823 BQ.1.1.6 1.59e-2 49 2022-7-26 2023-2-21
V8823 BQ.1.22 3.60e-2 33 2022-9-1 2023-2-19
V8823 BW.1.1 1.08e-2 18 2022-1-6 2023-2-22
V8823 C.35 1.71e-2 22 2020-4-6 2021-12-7
V8823 CH.1.1 3.08e-2 117 2022-7-27 2023-2-23
V8823 W.4 1.57e-2 11 2020-6-3 2021-9-29
V8823 AY.7 4.73e-2 245 2021-5-1 2022-1-15
V8823 BQ.1.1.13 4.82e-1 3336 2022-1-3 2023-2-23
V8823 BF.7 1.30e-2 756 2022-1-2 2023-2-20
V8823 B.1.1.144 1.94e-1 7 2020-8-10 2020-11-28
V8823 B.1.1.349 1.83e-2 2 2020-8-4 2021-4-2
V8823 B.1.1.356 1.63e-1 16 2020-5-20 2020-9-2
V8823 B.1.1.44 3.71e-2 14 2020-2-28 2021-3-10
V8823 B.1.153 2.63e-1 20 2020-3-11 2021-10-1
V8823 B.12 2.26e-2 3 2020-1-20 2020-8-22
V8823 B.1.420 4.29e-2 3 2020-3-25 2021-8-24
V8823 B.1.567 2.58e-2 7 2020-3-23 2021-4-3
V8823 B.1.600 4.35e-2 6 2020-4-7 2021-4-21
V8823 BA.2.10.4 2.90e-2 2 2022-6-24 2022-10-3
V8823 BA.2.35 1.05e-2 4 2022-3-1 2022-10-3
V8823 BF.30 1.33e-2 2 2022-5-26 2023-2-2
V8823 BG.4 1.69e-2 4 2022-5-1 2022-12-17
V8823 BN.1.8 9.93e-2 45 2022-8-24 2023-2-11
V8823 C.13 6.98e-2 3 2020-3-29 2021-2-16
V8823 C.1 7.33e-2 28 2020-4-16 2021-11-12
V8823 N.6 2.17e-2 3 2020-2-16 2021-10-24






Examining mutation (1524C>T) found in abundant sequences of non-human animal hosts

Exploring mutation presence across 35 non-human animal hosts for cross-species transmission.
Note: We retained the mutation that appear in at least three non-human animal hosts' sequences. The data is obtained from GISAID's metadata, specifically capturing the host of genomic sequences.

Animal host Lineage Source region Collection date Accession ID
Rhinolophus pusillus A Laos 2020-7-7 EPI_ISL_4302645
Odocoileus virginianus B.1.617.2 USA 2021-12-1 EPI_ISL_16297209
Odocoileus virginianus AY.103 USA 2021-11-12 EPI_ISL_13610669
Rhinolophus marshalli BA.1 Laos 2020-7-10 EPI_ISL_4302647
Rhinolophus malayanus BA.1 Laos 2020-7-5 EPI_ISL_4302644




Association between mutation (1524C>T) and patients of different ages, genders, and statuses

Note: The logistic regression model was employed to examine changes in patient data before and after the mutation. The logistic regression model was conducted using the glm function in R. The data is obtained from GISAID's metadata, specifically capturing the patient status, gender, and age of genomic sequences.

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient statuses (ambulatory, deceased, homebound, hospitalized, mild, and recovered) based on GISAID classifications. In the analysis exploring the association between mutation and patient status, the model included mutation, patient status, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient status Ambulatory -7.59e-1 2.48e-1 -3.06e+0 2.18e-3 Decrease
Deceased -1.61e+0 7.45e-1 -2.16e+0 3.11e-2 Decrease
Homebound 3.74e-1 7.71e-1 4.85e-1 6.28e-1 Increase
Hospitalized -4.11e-2 2.02e-1 -2.03e-1 8.39e-1 Decrease
Mild 9.65e-1 3.60e-1 2.69e+0 7.25e-3 Increase
Recovered 7.94e-1 2.27e-1 3.50e+0 4.66e-4 Increase

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient age (0-17, 18-39, 40-64, 65-84, and 85+). In the analysis exploring the association between mutation and patient age, the model included mutation, patient age, gender, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient age, years 0-17 1.18e-1 8.80e-2 1.34e+0 1.79e-1 Increase
18-39 -7.68e-2 4.30e-2 -1.78e+0 7.43e-2 Decrease
40-64 -8.47e-2 4.03e-2 -2.10e+0 3.56e-2 Decrease
65-84 6.74e-2 4.64e-2 1.45e+0 1.46e-1 Increase
>=85 1.74e-1 6.84e-2 2.55e+0 1.08e-2 Increase

Analyzing the association between mutation and patient status.
Note: we categorized the data into different patient gender (male and female). In the analysis exploring the association between mutation and patient gender, the model included mutation, patient gender, patient age, sequence region of origin, and sequence collection time point. In the 'increase' direction of the mutation, it means that when this mutation occurs, it increases the corresponding effect proportion. In the 'decrease' direction of the mutation, it means that when this mutation occurs, it decreases the corresponding effect proportion. A p-value lower than 0.001 signifies a notable differentiation between the population with and without the mutation.

Attribute Effect Estimate SE Z-value P-value Direction
Patient gender Male 9.35e-2 3.86e-2 2.42e+0 1.55e-2 Increase





Investigating natural selection at mutation (1524C>T) site for genetic adaptation and diversity

Note: Investigating the occurrence of positive selection or negative selection at this mutation site reveals implications for genetic adaptation and diversity.

The MEME method within the HyPhy software was employed to analyze positive selection. MEME: episodic selection.
Note: List of sites found to be under episodic selection by MEME (p < 0.05). "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site P-value Lineage Method

The FEL method within the HyPhy software was employed to analyze both positive and negative selection. FEL: pervasive selection on samll datasets.
Note: List of sites found to be under pervasive selection by FEL (p < 0.05). A beta value greater than alpha signifies positive selection, while a beta value smaller than alpha signifies negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Alpha Beta P-value Lineage Method

The FUBAR method within the HyPhy software was employed to analyze both positive and negative selection. FUBAR: pervasive selection on large datasets.
Note: List of sites found to be under pervasive selection by FUBAR (prob > 0.95). A prob[alpha < beta] value exceeding 0.95 indicates positive selection, while a prob[alpha > beta] value exceeding 0.95 indicates negative selection. "Protein Start" corresponds to the protein's starting genomic position. "Protein End" corresponds to the protein's ending genomic position. The term 'site' represents a selection site within the protein.

Protein name Protein start Protein end Protein length Site Prob[alpha>beta] Prob[alpha<beta] Lineage Method




Alterations in protein physicochemical properties induced by mutation (1524C>T)

Understanding the alterations in protein physicochemical properties can reveal the evolutionary processes and adaptive changes of viruses
Note: ProtParam software was used for the analysis of physicochemical properties. Significant change threshold: A change exceeding 10% compared to the reference is considered a significant change. "GRAVY" is an abbreviation for "grand average of hydropathicity".

Group Protein name Molecular weight Theoretical PI Extinction coefficients Aliphatic index GRAVY




Alterations in protein stability induced by mutation (1524C>T)

The impact of mutations on protein stability directly or indirectly affects the biological characteristics, adaptability, and transmission capacity of the virus
Note: iMutant 2.0 was utilized to analyze the effects of mutations on protein stability. pH 7 and a temperature of 25°C are employed to replicate the in vitro environment. pH 7.4 and a temperature of 37°C are utilized to simulate the in vivo environment.

Mutation Protein name Mutation type Position ΔDDG Stability pH Temperature Condition




Impact on protein function induced by mutation (1524C>T)

The impact of mutations on protein function
Note: The MutPred2 software was used to predict the pathogenicity of a mutation and gives the molecular mechanism of pathogenicity. A score above 0.5 indicates an increased likelihood of pathogenicity. "Pr" is the abbreviation for "proportion. P" is the abbreviation for "p-value.

Mutation Protein name Mutation type Score Molecular mechanisms




Exploring mutation (1524C>T) distribution within intrinsically disordered protein regions

Intrinsically Disordered Proteins (IDPs) which refers to protein regions that have no unique 3D structure. In viral proteins, mutations in the disordered regions s are critical for immune evasion and antibody escape, suggesting potential additional implications for vaccines and monoclonal therapeutic strategies.
Note: The iupred3 software was utilized for analyzing IDPs. A score greater than 0.5 is considered indicative of an IDP. In the plot, "POS" represents the position of the mutation.





Alterations in enzyme cleavage sites induced by mutation (1524C>T)

Exploring the impact of mutations on the cleavage sites of 28 enzymes.
Note: The PeptideCutter software was used for detecting enzymes cleavage sites. The increased enzymes cleavage sites refer to the cleavage sites in the mutated protein that are added compared to the reference protein. Conversely, the decreased enzymes cleavage sites indicate the cleavage sites in the mutated protein that are reduced compared to the reference protein.

Mutation Protein name Genome position Enzyme name Increased cleavage sites Decreased cleavage sites




Impact of spike protein mutation (1524C>T) on antigenicity and immunogenicity

Investigating the impact of mutations on antigenicity and immunogenicity carries important implications for vaccine design and our understanding of immune responses.
Note: An absolute change greater than 0.0102 (three times the median across sites) in antigenicity score is considered significant. An absolute changegreater than 0.2754 (three times the median across sites) in immunogenicity score is considered significant. The VaxiJen tool was utilized for antigenicity analysis. The IEDB tool was used for immunogenicity analysis. Antigens with a prediction score of more than 0.4 for this tool are considered candidate antigens. MHC I immunogenicity score >0, indicating a higher probability to stimulate an immune response.

Group Protein name Protein region Antigenicity score Immunogenicity score




Impact of mutation (1524C>T) on viral transmissibility by the affinity between RBD and ACE2 receptor

Unraveling the impact of mutations on the interaction between the receptor binding domain (RBD) and ACE2 receptor using deep mutational scanning (DMS) experimental data to gain insights into their effects on viral transmissibility.
Note: The ΔBinding affinity represents the disparity between the binding affinity of a mutation and the reference binding affinity. A positive Δbinding affinity value (Δlog10(KD,app) > 0) signifies an increased affinity between RBD and ACE2 receptor due to the mutation. Conversely, a negative value (Δlog10(KD,app) < 0) indicates a reduced affinity between RBD and ACE2 receptor caused by the mutation. A p-value smaller than 0.05 indicates significance. "Ave mut bind" represents the average binding affinity of this mutation. "Ave ref bind" refers to the average binding affinity at a site without any mutation (reference binding affinity).

;
Mutation Protein name Protein region Mutation Position Ave mut bind Ave ref bind ΔBinding affinity P-value Image


The interface between the receptor binding domain (RBD) and ACE2 receptor is depicted in the crystal structure 6JM0.
Note: The structure 6M0J encompasses the RBD range of 333 to 526. The binding sites (403-406, 408, 417, 439, 445-447, 449, 453, 455-456, 473-478, 484-498, and 500-506) on the RBD that interface with ACE2 are indicated in magenta. The binding sites on the RBD that have been identified through the interface footprints experiment. The ACE2 binding sites within the interface are shown in cyan, representing residues within 5Å proximity to the RBD binding sites. The mutation within the RBD range of 333 to 526 is depicted in red.

        Show as:

        Show interface residues:





Impact of mutation (1524C>T) on immune escape by the affinity between RBD and antibody/serum

By utilizing experimental data from deep mutational scanning (DMS), we can uncover how mutations affect the interaction between the receptor binding domain (RBD) and antibodies/serum. This approach provides valuable insights into strategies for evading the host immune response.
Note: We considered a mutation to mediate strong escape if the escape score exceeded 0.1 (10% of the maximum score of 1). A total of 1,504 antibodies/serum data were collected for this analysis. "Condition name" refers to the name of the antibodies/serum. "Mut escape score" represents the escape score of the mutation in that specific condition. "Avg mut escape score" indicates the average escape score of the mutation site in that condition, considering the occurrence of this mutation and other mutations. Class 1 antibodies bind to an epitope only in the RBD “up” conformation, and are the most abundant. Class 2 antibodies bind to the RBD both in “up” and “down” conformations. Class 3 and class 4 antibodies both bind outside the ACE2 binding site. Class 3 antibodies bind the RBD in both the open and closed conformation, while class 4 antibodies bind only in the open conformation.

Mutation Condition name Condition type Condition subtype Condition year Mut escape score Avg mut escape score




Investigating the co-mutation patterns of mutation (1524C>T) across 2,735 viral lineages

Investigating the co-mutation patterns of SARS-CoV-2 across 2,735 viral lineages to unravel the cooperative effects of different mutations. In biological research, correlation analysis of mutation sites helps us understand whether there is a close relationship or interaction between certain mutations.
Note: The Spearman correlation coefficient is used to calculate the correlation between two mutations within each Pango lineage. Holm–Bonferroni method was used for multiple test adjustment. We retained mutation pairs with correlation values greater than 0.6 or less than -0.6 and Holm–Bonferroni corrected p-values less than 0.05.

Associated mutation ID DNA mutation Mutation type Protein name Protein mutation correlation coefficient Lineage
V3838 1102C>A missense_variant S L368I 6.93e-1 BA.1.17.2
V4510 400C>T missense_variant ORF3a R134C 7.50e-1 BA.1.17.2
V7766 14460C>T synonymous_variant ORF1ab_pp1ab F4820F 8.16e-1 A.23.1
V9171 192C>T synonymous_variant ORF3a T64T 8.16e-1 A.23.1
V3719 593A>G missense_variant S D198G 7.07e-1 A.2.5
V4076 2372C>T missense_variant S T791I 7.07e-1 A.2.5
V3971 1843G>T missense_variant S V615F 7.07e-1 AD.2
V9771 999C>T synonymous_variant N Y333Y 1.00e+0 AD.2
V3018 17903C>T missense_variant ORF1ab_pp1ab P5968L 6.50e-1 AY.101
V3744 646C>T missense_variant S L216F 7.03e-1 AY.101
V3809 920C>T missense_variant S T307I 9.52e-1 AY.101
V3020 17905G>T missense_variant ORF1ab_pp1ab G5969C 1.00e+0 AY.104
V3283 19735G>T missense_variant ORF1ab_pp1ab V6579F 6.69e-1 AY.104
V5627 1147C>T missense_variant N P383S 8.94e-1 AY.104
V757 2410C>T missense_variant ORF1ab_pp1a P804S 1.00e+0 AY.104
V1984 9781G>A missense_variant ORF1ab_pp1a V3261I 7.07e-1 AY.106
V4324 59T>C missense_variant ORF3a I20T 1.00e+0 AY.106
V5807 *4385C>T downstream_gene_variant S None 7.07e-1 AY.106
V2678 15082C>T missense_variant ORF1ab_pp1ab L5028F 6.32e-1 AY.109
V6309 3138G>T synonymous_variant ORF1ab_pp1a V1046V 6.32e-1 AY.109
V7814 14844C>T synonymous_variant ORF1ab_pp1ab T4948T 6.32e-1 AY.109
V8260 18222C>T synonymous_variant ORF1ab_pp1ab L6074L 6.32e-1 AY.109
V424 1112C>T missense_variant ORF1ab_pp1a P371L 6.12e-1 AY.113
V1426 6087G>T missense_variant ORF1ab_pp1a K2029N 8.16e-1 AY.114
V1840 8570T>C missense_variant ORF1ab_pp1a V2857A 6.66e-1 AY.114
V1929 9226C>T missense_variant ORF1ab_pp1a H3076Y 6.66e-1 AY.114
V2918 17146C>T missense_variant ORF1ab_pp1ab R5716C 6.66e-1 AY.114
V3268 19637C>T missense_variant ORF1ab_pp1ab A6546V 8.16e-1 AY.114
V4034 2063C>T missense_variant S A688V 8.16e-1 AY.114
V6313 3165A>G synonymous_variant ORF1ab_pp1a T1055T 8.16e-1 AY.114
V6753 6441C>T synonymous_variant ORF1ab_pp1a N2147N 8.16e-1 AY.114
V7478 12228C>T synonymous_variant ORF1ab_pp1a D4076D 8.16e-1 AY.114
V8066 16854C>T synonymous_variant ORF1ab_pp1ab G5618G 8.16e-1 AY.114
V8740 826C>T synonymous_variant S L276L 8.16e-1 AY.114
V9226 627A>G synonymous_variant ORF3a S209S 8.16e-1 AY.114
V6835 7164A>G synonymous_variant ORF1ab_pp1a A2388A 6.12e-1 AY.117
V858 2897C>T missense_variant ORF1ab_pp1a S966F 6.60e-1 AY.117
V8839 1647A>G synonymous_variant S T549T 6.58e-1 AY.117
V676 2040G>T missense_variant ORF1ab_pp1a K680N 8.16e-1 AY.118
V5281 53G>T missense_variant N G18V 1.00e+0 AY.11
V7629 13437T>C synonymous_variant ORF1ab_pp1ab Y4479Y 1.00e+0 AY.11
V8847 1722T>C synonymous_variant S D574D 7.07e-1 AY.11
V3327 20011G>T missense_variant ORF1ab_pp1ab D6671Y 9.14e-1 AY.120.1
V3997 1963C>T missense_variant S H655Y 1.00e+0 AY.120.2.1
V6318 3192C>T synonymous_variant ORF1ab_pp1a Y1064Y 8.16e-1 AY.120.2.1
V7346 11310C>T synonymous_variant ORF1ab_pp1a F3770F 1.00e+0 AY.120.2.1
V4120 2674G>T missense_variant S A892S 7.07e-1 AY.120.2
V1721 7825C>T missense_variant ORF1ab_pp1a L2609F 9.33e-1 AY.121.1
V4458 289G>A missense_variant ORF3a V97I 9.85e-1 AY.121.1
V7274 10620T>C synonymous_variant ORF1ab_pp1a N3540N 9.90e-1 AY.121.1
V7602 13194G>T synonymous_variant ORF1ab_pp1a S4398S 9.70e-1 AY.121.1
V9082 3456A>G synonymous_variant S L1152L 8.09e-1 AY.121.1
V9103 3588T>G synonymous_variant S S1196S 9.90e-1 AY.121.1
V3523 24G>T missense_variant S L8F 8.33e-1 AY.124
V4918 184C>T stop_gained ORF7a Q62* 1.00e+0 AY.131
V5163 205T>C missense_variant ORF8 S69P 1.00e+0 AY.131
V5541 800C>T missense_variant N A267V 1.00e+0 AY.131
V5677 -3C>T upstream_gene_variant ORF10 None 1.00e+0 AY.131
V7025 8715C>T synonymous_variant ORF1ab_pp1a Y2905Y 1.00e+0 AY.131
V9736 871C>T synonymous_variant N L291L 7.07e-1 AY.131
V3195 19000C>T missense_variant ORF1ab_pp1ab L6334F 7.90e-1 AY.14
V2421 12911C>T missense_variant ORF1ab_pp1a T4304I 7.17e-1 AY.27
V2754 15811G>T missense_variant ORF1ab_pp1ab D5271Y 8.78e-1 AY.27
V4817 80G>T missense_variant ORF6 W27L 6.70e-1 AY.27
V5470 617C>T missense_variant N S206F 8.07e-1 AY.27
V5569 956G>A missense_variant N R319H 8.73e-1 AY.3.1
V4965 277G>T missense_variant ORF7a V93F 7.07e-1 AY.32
V5124 135G>T missense_variant ORF8 W45C 7.07e-1 AY.32
V8701 534C>T synonymous_variant S D178D 7.07e-1 AY.34.1
V2550 13856C>T missense_variant ORF1ab_pp1ab P4619L 7.07e-1 AY.35
V5171 218A>G missense_variant ORF8 Y73C 7.07e-1 AY.35
V5461 608G>A missense_variant N R203K 7.07e-1 AY.35
V5465 610G>C missense_variant N G204R 7.07e-1 AY.35
V5514 704C>T missense_variant N S235F 7.07e-1 AY.35
V7192 9930A>G synonymous_variant ORF1ab_pp1a E3310E 7.07e-1 AY.35
V9639 415T>C synonymous_variant N L139L 7.07e-1 AY.35
V9682 609G>A synonymous_variant N R203R 7.07e-1 AY.35
V8236 18102A>G synonymous_variant ORF1ab_pp1ab L6034L 7.07e-1 AY.37
V196 253A>G missense_variant ORF1ab_pp1a M85V 1.00e+0 AY.38
V8241 18126A>G synonymous_variant ORF1ab_pp1ab L6042L 1.00e+0 AY.38
V1073 3690G>T missense_variant ORF1ab_pp1a K1230N 7.07e-1 AY.4.11
V149 136C>T missense_variant ORF1ab_pp1a L46F 1.00e+0 AY.4.11
V1528 6428A>G missense_variant ORF1ab_pp1a K2143R 1.00e+0 AY.4.11
V5160 200C>T missense_variant ORF8 S67F 1.00e+0 AY.4.11
V7704 14058C>T synonymous_variant ORF1ab_pp1ab Y4686Y 7.07e-1 AY.4.11
V8901 2049G>T synonymous_variant S R683R 1.00e+0 AY.4.11
V192 253_258delATGGTT conservative_inframe_deletion ORF1ab_pp1a M85_V86del 7.07e-1 AY.4.14
V3350 20140C>T missense_variant ORF1ab_pp1ab P6714S 7.07e-1 AY.41
V796 2635G>A missense_variant ORF1ab_pp1a V879I 6.32e-1 AY.4.2.1
V4332 68C>T missense_variant ORF3a A23V 7.07e-1 AY.4.2.3
V3261 19609A>G missense_variant ORF1ab_pp1ab I6537V 7.07e-1 AY.4.3
V1446 6146A>G missense_variant ORF1ab_pp1a E2049G 7.97e-1 AY.4.4
V1090 3775A>G missense_variant ORF1ab_pp1a I1259V 7.87e-1 AY.4.5
V1670 7499C>T missense_variant ORF1ab_pp1a S2500F 6.26e-1 AY.4.5
V2797 16274A>G missense_variant ORF1ab_pp1ab D5425G 6.09e-1 AY.4.5
V4331 67G>T missense_variant ORF3a A23S 6.45e-1 AY.4.5
V7340 11259T>C synonymous_variant ORF1ab_pp1a F3753F 6.17e-1 AY.4.5
V2837 16648G>T missense_variant ORF1ab_pp1ab V5550L 1.00e+0 AY.46.2
V4697 -38_-37delTT upstream_gene_variant M None 1.00e+0 AY.46.2
V5337 163G>T missense_variant N A55S 1.00e+0 AY.46.2
V5766 *4352G>T downstream_gene_variant S None 1.00e+0 AY.46.2
V178 245_250delGTCATG disruptive_inframe_deletion ORF1ab_pp1a G82_H83del 8.16e-1 AY.46.3
V3303 19819G>A missense_variant ORF1ab_pp1ab V6607I 1.00e+0 AY.46.3
V4078 2386G>C missense_variant S D796H 1.00e+0 AY.46.3
V7675 13851C>T synonymous_variant ORF1ab_pp1ab T4617T 6.32e-1 AY.46.3
V2835 16613C>T missense_variant ORF1ab_pp1ab T5538I 7.71e-1 AY.46
V7916 15669C>T synonymous_variant ORF1ab_pp1ab Y5223Y 8.74e-1 AY.46
V2875 16871C>T missense_variant ORF1ab_pp1ab P5624L 1.00e+0 AY.4.7
V1371 5762C>T missense_variant ORF1ab_pp1a P1921L 1.00e+0 AY.51
V2997 17768C>T missense_variant ORF1ab_pp1ab T5923I 1.00e+0 AY.51
V4775 373C>T missense_variant M H125Y 7.07e-1 AY.52
V5621 1136C>T missense_variant N T379I 8.66e-1 AY.57
V5622 1139A>T missense_variant N Q380L 8.66e-1 AY.57
V963 3275C>T missense_variant ORF1ab_pp1a A1092V 7.07e-1 AY.59
V4143 2848G>A missense_variant S D950N -7.02e-1 AY.63
V5341 188A>G missense_variant N D63G -7.69e-1 AY.63
V7136 9592C>T synonymous_variant ORF1ab_pp1a L3198L -6.46e-1 AY.63
V9776 1023C>T synonymous_variant N D341D 8.16e-1 AY.63
V2653 14762C>T missense_variant ORF1ab_pp1ab A4921V 9.51e-1 AY.64
V1459 6184C>T missense_variant ORF1ab_pp1a L2062F 9.67e-1 AY.66
V180 241C>T missense_variant ORF1ab_pp1a H81Y 7.12e-1 AY.66
V1947 9387G>T missense_variant ORF1ab_pp1a M3129I 9.90e-1 AY.66
V2038 10184C>T missense_variant ORF1ab_pp1a P3395L 9.78e-1 AY.66
V3790 778G>A missense_variant S A260T 9.04e-1 AY.66
V4875 70G>T missense_variant ORF7a V24F -7.16e-1 AY.66
V531 1555G>A missense_variant ORF1ab_pp1a G519S 9.87e-1 AY.66
V5471 619C>T missense_variant N P207S -9.05e-1 AY.66
V5813 *4394G>T downstream_gene_variant S None 7.88e-1 AY.66
V6095 1647C>T synonymous_variant ORF1ab_pp1a S549S 9.88e-1 AY.66
V6200 2358C>T synonymous_variant ORF1ab_pp1a N786N 9.88e-1 AY.66
V8468 19914C>T synonymous_variant ORF1ab_pp1ab V6638V 9.82e-1 AY.66
V8749 906G>T synonymous_variant S T302T 9.83e-1 AY.66
V9060 3342C>T synonymous_variant S I1114I 9.77e-1 AY.66
V9475 291C>T synonymous_variant ORF7a Y97Y 9.57e-1 AY.66
V4918 184C>T stop_gained ORF7a Q62* 1.00e+0 AY.70
V5586 1031C>T missense_variant N P344L 8.89e-1 AY.70
V5983 829T>C synonymous_variant ORF1ab_pp1a L277L 1.00e+0 AY.70
V7724 14199A>G synonymous_variant ORF1ab_pp1ab V4733V 1.00e+0 AY.70
V66 -63C>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 AY.74
V1973 9628C>T missense_variant ORF1ab_pp1a L3210F 8.36e-1 AY.78
V2711 15392C>T missense_variant ORF1ab_pp1ab T5131I 6.98e-1 AY.78
V6866 7467C>T synonymous_variant ORF1ab_pp1a Y2489Y 8.36e-1 AY.78
V2211 11256G>T missense_variant ORF1ab_pp1a M3752I 1.00e+0 AY.79
V6760 6516C>T synonymous_variant ORF1ab_pp1a F2172F 1.00e+0 AY.79
V3798 794A>G missense_variant S Y265C 7.91e-1 AY.7
V3911 1451A>C missense_variant S E484A 8.44e-1 AY.88
V4134 2816C>T missense_variant S S939F 6.70e-1 AY.88
V5997 921G>A synonymous_variant ORF1ab_pp1a A307A 7.74e-1 AY.88
V6545 4917T>C synonymous_variant ORF1ab_pp1a D1639D 1.00e+0 AY.88
V7107 9333C>T synonymous_variant ORF1ab_pp1a Y3111Y 1.00e+0 AY.88
V3542 65C>T missense_variant S T22I 1.00e+0 AY.8
V2059 10447C>T missense_variant ORF1ab_pp1a L3483F 7.07e-1 AY.90
V3252 19499C>T missense_variant ORF1ab_pp1ab T6500I 8.16e-1 AY.92
V4624 766_769delGTTA frameshift_variant ORF3a V256fs 8.16e-1 AY.92
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 8.16e-1 AY.92
V6945 8061C>T synonymous_variant ORF1ab_pp1a D2687D 6.32e-1 AY.92
V948 3218G>T missense_variant ORF1ab_pp1a G1073V 8.16e-1 AY.93
V1350 5570C>T missense_variant ORF1ab_pp1a S1857L 8.74e-1 AY.98.1
V2088 10628C>T missense_variant ORF1ab_pp1a T3543I 8.95e-1 AY.98.1
V6226 2499G>T synonymous_variant ORF1ab_pp1a V833V 8.20e-1 AY.98.1
V1873 8729C>T missense_variant ORF1ab_pp1a T2910I 7.07e-1 AY.99
V6538 4879C>T synonymous_variant ORF1ab_pp1a L1627L 8.16e-1 AZ.3
V1453 6170T>C missense_variant ORF1ab_pp1a I2057T 9.21e-1 B.1.110.3
V4401 163G>T missense_variant ORF3a V55F 8.01e-1 B.1.110.3
V5843 72C>T synonymous_variant ORF1ab_pp1a R24R 7.94e-1 B.1.110.3
V7360 11439C>T synonymous_variant ORF1ab_pp1a Y3813Y 6.88e-1 B.1.110.3
V9772 1008C>T synonymous_variant N A336A 8.01e-1 B.1.110.3
V1628 7063G>T missense_variant ORF1ab_pp1a A2355S 1.00e+0 B.1.1.10
V1637 7122G>A missense_variant ORF1ab_pp1a M2374I 1.00e+0 B.1.1.10
V2897 16995G>T missense_variant ORF1ab_pp1ab E5665D 1.00e+0 B.1.1.10
V3526 35C>T missense_variant S S12F 1.00e+0 B.1.1.10
V5706 70C>T missense_variant ORF10 R24C 1.00e+0 B.1.1.10
V5801 *4378C>T downstream_gene_variant S None 1.00e+0 B.1.1.10
V7541 12786C>T synonymous_variant ORF1ab_pp1a A4262A 1.00e+0 B.1.1.10
V9171 192C>T synonymous_variant ORF3a T64T 1.00e+0 B.1.1.10
V9354 414C>T synonymous_variant M L138L 1.00e+0 B.1.1.10
V9736 871C>T synonymous_variant N L291L 1.00e+0 B.1.1.10
V3454 20873A>G missense_variant ORF1ab_pp1ab K6958R 1.00e+0 B.1.111
V6367 3552C>T synonymous_variant ORF1ab_pp1a D1184D 1.00e+0 B.1.111
V5136 164C>T missense_variant ORF8 A55V 9.55e-1 B.1.1.170
V6422 4011C>T synonymous_variant ORF1ab_pp1a Y1337Y 9.78e-1 B.1.1.170
V7970 16098C>T synonymous_variant ORF1ab_pp1ab V5366V 9.78e-1 B.1.1.170
V8144 17412C>T synonymous_variant ORF1ab_pp1ab I5804I 9.39e-1 B.1.1.170
V9243 732C>T synonymous_variant ORF3a V244V 9.34e-1 B.1.1.170
V4454 280C>T missense_variant ORF3a L94F 6.32e-1 B.1.1.1
V6327 3246C>T synonymous_variant ORF1ab_pp1a A1082A 6.32e-1 B.1.1.1
V682 2072A>G missense_variant ORF1ab_pp1a D691G 6.32e-1 B.1.1.1
V7552 12861G>T synonymous_variant ORF1ab_pp1a G4287G 6.32e-1 B.1.1.1
V3604 268G>A missense_variant S V90I 7.07e-1 B.1.1.216
V6382 3729G>T synonymous_variant ORF1ab_pp1a L1243L 7.07e-1 B.1.1.216
V822 2776C>T missense_variant ORF1ab_pp1a P926S 7.07e-1 B.1.1.216
V3081 18247C>T missense_variant ORF1ab_pp1ab P6083S 8.50e-1 B.1.1.232
V3445 20794C>T missense_variant ORF1ab_pp1ab P6932S 7.04e-1 B.1.1.232
V4539 515G>T missense_variant ORF3a G172V 7.81e-1 B.1.1.232
V5206 337G>T missense_variant ORF8 D113Y 6.63e-1 B.1.1.232
V7057 8925G>T synonymous_variant ORF1ab_pp1a V2975V 7.04e-1 B.1.1.232
V5027 43G>T missense_variant ORF7b A15S 1.00e+0 B.1.1.307
V8407 19338C>T synonymous_variant ORF1ab_pp1ab N6446N 1.00e+0 B.1.1.307
V2283 11810A>G missense_variant ORF1ab_pp1a N3937S 7.07e-1 B.1.1.317
V3794 784G>T missense_variant S A262S 1.00e+0 B.1.1.317
V4926 197C>T missense_variant ORF7a A66V 1.00e+0 B.1.1.317
V7193 9933C>T synonymous_variant ORF1ab_pp1a D3311D 1.00e+0 B.1.1.317
V8372 19041T>C synonymous_variant ORF1ab_pp1ab N6347N 1.00e+0 B.1.1.317
V9123 3753A>G synonymous_variant S G1251G 7.07e-1 B.1.1.317
V4593 667A>G missense_variant ORF3a T223A 6.38e-1 B.1.1.33
V2676 15063G>T missense_variant ORF1ab_pp1ab M5021I 6.66e-1 B.1.1.348
V4164 3193G>T missense_variant S V1065L 1.00e+0 B.1.1.369
V2983 17700G>T missense_variant ORF1ab_pp1ab M5900I 7.07e-1 B.1.1.37
V7022 8685C>T synonymous_variant ORF1ab_pp1a I2895I 1.00e+0 B.1.139
V7704 14058C>T synonymous_variant ORF1ab_pp1ab Y4686Y 1.00e+0 B.1.139
V933 3163A>G missense_variant ORF1ab_pp1a T1055A 7.25e-1 B.1.160
V6250 2677C>T synonymous_variant ORF1ab_pp1a L893L 1.00e+0 B.1.1.70
V7741 14310T>C synonymous_variant ORF1ab_pp1ab P4770P 7.07e-1 B.1.1.70
V5153 194C>T missense_variant ORF8 A65V 1.00e+0 B.1.177.46
V6869 7500C>T synonymous_variant ORF1ab_pp1a S2500S 1.00e+0 B.1.177.46
V7421 11805G>T synonymous_variant ORF1ab_pp1a L3935L 1.00e+0 B.1.177.46
V9565 42C>T synonymous_variant N R14R 8.16e-1 B.1.177.46
V5274 38C>T missense_variant N P13L 7.07e-1 B.1.177.57
V7306 10935C>T synonymous_variant ORF1ab_pp1a A3645A 1.00e+0 B.1.177.62
V3005 17841G>T missense_variant ORF1ab_pp1ab Q5947H 6.68e-1 B.1.177.86
V4510 400C>T missense_variant ORF3a R134C 7.07e-1 B.1.177.86
V3852 1216G>C missense_variant S E406Q 8.16e-1 B.1.232
V4246 3601C>A missense_variant S Q1201K 8.66e-1 B.1.232
V4319 52G>T missense_variant ORF3a G18C 1.00e+0 B.1.232
V1605 6836C>T missense_variant ORF1ab_pp1a A2279V 1.00e+0 B.1.240
V3615 292T>C missense_variant S S98P 1.00e+0 B.1.258.14
V4581 637C>A missense_variant ORF3a Q213K 1.00e+0 B.1.258.14
V5869 204T>C synonymous_variant ORF1ab_pp1a Y68Y 7.95e-1 B.1.258.14
V6520 4743G>A synonymous_variant ORF1ab_pp1a T1581T 1.00e+0 B.1.258.14
V8441 19671T>C synonymous_variant ORF1ab_pp1ab T6557T 1.00e+0 B.1.258.14
V896 3028C>T missense_variant ORF1ab_pp1a P1010S 1.00e+0 B.1.258.14
V2405 12746C>T missense_variant ORF1ab_pp1a T4249I 7.07e-1 B.1.279
V4789 623C>T missense_variant M T208I 1.00e+0 B.1.279
V5002 361G>T stop_gained ORF7a E121* 7.07e-1 B.1.279
V1687 7604C>T missense_variant ORF1ab_pp1a S2535L 9.02e-1 B.1.349
V3944 1662G>T missense_variant S E554D 9.78e-1 B.1.349
V6070 1476A>G synonymous_variant ORF1ab_pp1a K492K 9.32e-1 B.1.349
V6784 6741C>T synonymous_variant ORF1ab_pp1a T2247T 9.40e-1 B.1.349
V7088 9183C>T synonymous_variant ORF1ab_pp1a A3061A 9.69e-1 B.1.349
V7819 14877C>T synonymous_variant ORF1ab_pp1ab T4959T 9.65e-1 B.1.349
V6339 3324C>T synonymous_variant ORF1ab_pp1a H1108H 7.07e-1 B.1.351.3
V1264 4930G>T missense_variant ORF1ab_pp1a G1644C 1.00e+0 B.1.36.1
V1285 5114G>C missense_variant ORF1ab_pp1a G1705A 1.00e+0 B.1.36.1
V1523 6407A>C missense_variant ORF1ab_pp1a D2136A 1.00e+0 B.1.36.1
V2528 13694G>T missense_variant ORF1ab_pp1ab R4565L 1.00e+0 B.1.36.1
V2640 14652A>T missense_variant ORF1ab_pp1ab Q4884H 1.00e+0 B.1.36.1
V3506 21202A>T missense_variant ORF1ab_pp1ab M7068L 1.00e+0 B.1.36.1
V7789 14634C>A synonymous_variant ORF1ab_pp1ab G4878G 1.00e+0 B.1.36.1
V384 953C>T missense_variant ORF1ab_pp1a S318L 6.14e-1 B.1.36.29
V3924 1480T>C missense_variant S S494P 7.21e-1 B.1.36.29
V4521 452C>T missense_variant ORF3a T151I 6.44e-1 B.1.36.29
V6684 6003C>T synonymous_variant ORF1ab_pp1a A2001A 7.71e-1 B.1.36.29
V8583 20952C>T synonymous_variant ORF1ab_pp1ab H6984H 9.13e-1 B.1.36.29
V9766 987G>T synonymous_variant N T329T 9.13e-1 B.1.36.29
V1556 6578C>T missense_variant ORF1ab_pp1a S2193F 6.01e-1 B.1.367
V2067 10496A>G missense_variant ORF1ab_pp1a K3499R 6.01e-1 B.1.367
V4049 2156C>T missense_variant S T719I 1.00e+0 B.1.369
V6354 3430C>T synonymous_variant ORF1ab_pp1a L1144L 8.16e-1 B.1.369
V2064 10483C>T missense_variant ORF1ab_pp1a L3495F 1.00e+0 B.1.389
V8300 18540C>T synonymous_variant ORF1ab_pp1ab S6180S 1.00e+0 B.1.389
V1217 4697G>A missense_variant ORF1ab_pp1a R1566K 7.07e-1 B.1.391
V1264 4930G>T missense_variant ORF1ab_pp1a G1644C 1.00e+0 B.1.391
V1285 5114G>C missense_variant ORF1ab_pp1a G1705A 7.07e-1 B.1.391
V1303 5282C>T missense_variant ORF1ab_pp1a T1761I 7.07e-1 B.1.391
V1396 5947G>A missense_variant ORF1ab_pp1a A1983T 7.07e-1 B.1.391
V1523 6407A>C missense_variant ORF1ab_pp1a D2136A 7.07e-1 B.1.391
V1797 8341C>A missense_variant ORF1ab_pp1a L2781I 7.07e-1 B.1.391
V1845 8596G>A missense_variant ORF1ab_pp1a V2866M 7.07e-1 B.1.391
V1876 8784G>T missense_variant ORF1ab_pp1a K2928N 6.31e-1 B.1.391
V1982 9764C>T missense_variant ORF1ab_pp1a T3255I 1.00e+0 B.1.391
V2146 10978G>A missense_variant ORF1ab_pp1a V3660M 1.00e+0 B.1.391
V2327 12190C>A missense_variant ORF1ab_pp1a L4064I 7.07e-1 B.1.391
V2375 12524C>T missense_variant ORF1ab_pp1a T4175I 7.07e-1 B.1.391
V2495 13498G>A missense_variant ORF1ab_pp1ab G4500S 7.07e-1 B.1.391
V2500 13523G>T missense_variant ORF1ab_pp1ab R4508L 7.07e-1 B.1.391
V2528 13694G>T missense_variant ORF1ab_pp1ab R4565L 7.07e-1 B.1.391
V2602 14216A>T missense_variant ORF1ab_pp1ab H4739L 7.07e-1 B.1.391
V2610 14316G>T missense_variant ORF1ab_pp1ab M4772I 1.00e+0 B.1.391
V2640 14652A>T missense_variant ORF1ab_pp1ab Q4884H 1.00e+0 B.1.391
V2918 17146C>T missense_variant ORF1ab_pp1ab R5716C 7.07e-1 B.1.391
V3439 20746G>A missense_variant ORF1ab_pp1ab V6916I 7.07e-1 B.1.391
V3506 21202A>T missense_variant ORF1ab_pp1ab M7068L 7.07e-1 B.1.391
V3549 73C>T missense_variant S P25S 1.00e+0 B.1.391
V3900 1433C>A missense_variant S T478K 1.00e+0 B.1.391
V4005 2014G>T missense_variant S A672S 1.00e+0 B.1.391
V4221 3471G>T missense_variant S K1157N 7.07e-1 B.1.391
V4368 122T>A missense_variant ORF3a L41H 1.00e+0 B.1.391
V4566 579G>T missense_variant ORF3a W193C 7.07e-1 B.1.391
V4611 730G>A missense_variant ORF3a V244I 1.00e+0 B.1.391
V4702 -31A>T upstream_gene_variant M None 7.07e-1 B.1.391
V4739 142A>C missense_variant M I48L 1.00e+0 B.1.391
V5128 151G>T missense_variant ORF8 A51S 1.00e+0 B.1.391
V5195 302G>A missense_variant ORF8 R101H 7.07e-1 B.1.391
V5670 -12C>T upstream_gene_variant ORF10 None 1.00e+0 B.1.391
V6018 1045T>C synonymous_variant ORF1ab_pp1a L349L 7.07e-1 B.1.391
V6265 2772C>T synonymous_variant ORF1ab_pp1a F924F -6.31e-1 B.1.391
V6357 3480T>C synonymous_variant ORF1ab_pp1a H1160H 7.07e-1 B.1.391
V6392 3795A>T synonymous_variant ORF1ab_pp1a P1265P 1.00e+0 B.1.391
V6618 5433T>A synonymous_variant ORF1ab_pp1a P1811P 7.07e-1 B.1.391
V6744 6387T>A synonymous_variant ORF1ab_pp1a A2129A 7.07e-1 B.1.391
V6784 6741C>T synonymous_variant ORF1ab_pp1a T2247T 7.07e-1 B.1.391
V6955 8109A>T synonymous_variant ORF1ab_pp1a V2703V 7.07e-1 B.1.391
V7281 10689C>T synonymous_variant ORF1ab_pp1a C3563C 1.00e+0 B.1.391
V7789 14634C>A synonymous_variant ORF1ab_pp1ab G4878G 1.00e+0 B.1.391
V8058 16755G>A synonymous_variant ORF1ab_pp1ab E5585E 7.07e-1 B.1.391
V829 2785G>A missense_variant ORF1ab_pp1a E929K 7.07e-1 B.1.391
V852 2875C>T missense_variant ORF1ab_pp1a P959S 1.00e+0 B.1.391
V8564 20793C>T synonymous_variant ORF1ab_pp1ab D6931D 7.07e-1 B.1.391
V8601 21042C>T synonymous_variant ORF1ab_pp1ab R7014R 7.07e-1 B.1.391
V8642 165C>T synonymous_variant S F55F 7.07e-1 B.1.391
V8678 336G>T synonymous_variant S S112S 7.07e-1 B.1.391
V8718 654G>A synonymous_variant S Q218Q 7.07e-1 B.1.391
V9011 2940C>T synonymous_variant S I980I 1.00e+0 B.1.391
V9747 924C>T synonymous_variant N A308A 1.00e+0 B.1.391
V4754 226A>G missense_variant M I76V 8.65e-1 B.1.416.1
V4818 85C>T missense_variant ORF6 L29F 8.65e-1 B.1.416.1
V2320 12092C>T missense_variant ORF1ab_pp1a T4031I 7.94e-1 B.1.427
V6395 3819C>T synonymous_variant ORF1ab_pp1a D1273D 6.47e-1 B.1.427
V6799 6840C>T synonymous_variant ORF1ab_pp1a T2280T 6.51e-1 B.1.427
V8457 19791A>G synonymous_variant ORF1ab_pp1ab E6597E 6.67e-1 B.1.427
V1052 3620C>T missense_variant ORF1ab_pp1a P1207L 6.65e-1 B.1.470
V5204 328G>T stop_gained ORF8 E110* 8.16e-1 B.1.470
V7126 9538C>T synonymous_variant ORF1ab_pp1a L3180L 6.65e-1 B.1.470
V7359 11416C>T synonymous_variant ORF1ab_pp1a L3806L 8.16e-1 B.1.470
V9244 738T>C synonymous_variant ORF3a I246I 8.16e-1 B.1.470
V934 3164C>T missense_variant ORF1ab_pp1a T1055I 8.16e-1 B.1.470
V9568 48G>T synonymous_variant N T16T 6.65e-1 B.1.470
V2044 10339C>T missense_variant ORF1ab_pp1a P3447S 1.00e+0 B.1.499
V5723 *4301T>C downstream_gene_variant S None 1.00e+0 B.1.499
V2639 14610G>T missense_variant ORF1ab_pp1ab K4870N 1.00e+0 B.1.509
V1530 6431C>T missense_variant ORF1ab_pp1a P2144L 6.13e-1 B.1.517
V5160 200C>T missense_variant ORF8 S67F 6.83e-1 B.1.517
V5239 -3A>C upstream_gene_variant N None 8.28e-1 B.1.517
V9494 49C>T synonymous_variant ORF7b L17L 7.71e-1 B.1.517
V1947 9387G>T missense_variant ORF1ab_pp1a M3129I 7.07e-1 B.1.525
V372 913C>T missense_variant ORF1ab_pp1a P305S 1.00e+0 B.1.525
V5027 43G>T missense_variant ORF7b A15S 1.00e+0 B.1.525
V9397 18C>T synonymous_variant ORF6 D6D 1.00e+0 B.1.525
V1134 4134G>T missense_variant ORF1ab_pp1a M1378I 6.66e-1 B.1.560
V447 1196A>G missense_variant ORF1ab_pp1a K399R 8.16e-1 B.1.560
V454 1208C>T missense_variant ORF1ab_pp1a T403I 8.16e-1 B.1.560
V7102 9294C>T synonymous_variant ORF1ab_pp1a Y3098Y 6.66e-1 B.1.560
V8676 333T>C synonymous_variant S D111D 8.16e-1 B.1.560
V8405 19329C>T synonymous_variant ORF1ab_pp1ab N6443N 6.12e-1 B.1.565
V9644 432T>C synonymous_variant N D144D 7.90e-1 B.1.565
V9353 405A>G synonymous_variant M E135E 7.07e-1 B.1.575
V3033 17983C>T missense_variant ORF1ab_pp1ab P5995S 1.00e+0 B.1.577
V4765 253G>T missense_variant M A85S 1.00e+0 B.1.577
V6753 6441C>T synonymous_variant ORF1ab_pp1a N2147N 7.07e-1 B.1.577
V7750 14358G>A synonymous_variant ORF1ab_pp1ab T4786T 1.00e+0 B.1.577
V1081 3722C>T missense_variant ORF1ab_pp1a T1241I 1.00e+0 B.1.588
V4930 208G>T missense_variant ORF7a G70C 7.07e-1 B.1.588
V9448 168G>T synonymous_variant ORF7a L56L 1.00e+0 B.1.588
V2451 13193C>T missense_variant ORF1ab_pp1a S4398L 7.07e-1 B.1.595
V6746 6399C>T synonymous_variant ORF1ab_pp1a V2133V 1.00e+0 B.1.595
V6136 1896A>G synonymous_variant ORF1ab_pp1a E632E 7.07e-1 B.1.609
V71 -59C>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 B.1.609
V979 3322C>T missense_variant ORF1ab_pp1a H1108Y 6.32e-1 B.1.617.1
V1077 3701C>T missense_variant ORF1ab_pp1a A1234V 6.70e-1 B.1.623
V3205 19103C>T missense_variant ORF1ab_pp1ab P6368L 6.70e-1 B.1.623
V2891 16972A>G missense_variant ORF1ab_pp1ab I5658V 6.66e-1 BA.1.1.11
V9651 459C>T synonymous_variant N N153N 7.06e-1 BA.1.15.2
V504 1405C>T missense_variant ORF1ab_pp1a L469F 1.00e+0 BA.1.1.6
V3158 18754C>T missense_variant ORF1ab_pp1ab P6252S 1.00e+0 BA.1.9
V6461 4317C>T synonymous_variant ORF1ab_pp1a N1439N 7.07e-1 BA.1.9
V730 2305C>T missense_variant ORF1ab_pp1a P769S 1.00e+0 BA.1.9
V8503 20247A>G synonymous_variant ORF1ab_pp1ab L6749L 1.00e+0 BA.1.9
V5611 1119G>T missense_variant N K373N 7.50e-1 BA.2.10.2
V8027 16542C>T synonymous_variant ORF1ab_pp1ab N5514N 8.66e-1 BA.2.10.2
V7022 8685C>T synonymous_variant ORF1ab_pp1a I2895I 7.07e-1 BA.2.12
V7208 10095G>A synonymous_variant ORF1ab_pp1a K3365K 1.00e+0 BA.2.23.1
V593 1738C>T missense_variant ORF1ab_pp1a L580F 1.00e+0 BA.2.3.11
V7035 8808C>T synonymous_variant ORF1ab_pp1a T2936T 1.00e+0 BA.2.3.12
V9616 258C>T synonymous_variant N Y86Y 1.00e+0 BA.2.3.12
V1375 5768C>T missense_variant ORF1ab_pp1a A1923V 1.00e+0 BA.2.3.14
V3602 250C>A missense_variant S L84I 1.00e+0 BA.2.3.14
V3744 646C>T missense_variant S L216F 7.58e-1 BA.2.3.17
V780 2582C>T missense_variant ORF1ab_pp1a T861I 9.59e-1 BA.2.3.17
V3638 432_434delTTA disruptive_inframe_deletion S Y145del 1.00e+0 BA.2.38.1
V4222 3484C>T missense_variant S P1162S 7.07e-1 BA.2.38.1
V8370 19005C>T synonymous_variant ORF1ab_pp1ab N6335N 1.00e+0 BA.2.41
V1605 6836C>T missense_variant ORF1ab_pp1a A2279V 1.00e+0 BA.2.42
V8600 21033C>T synonymous_variant ORF1ab_pp1ab G7011G 1.00e+0 BA.2.42
V4378 130G>A missense_variant ORF3a G44R 1.00e+0 BA.2.54
V7792 14649C>T synonymous_variant ORF1ab_pp1ab N4883N 1.00e+0 BA.2.54
V3423 20666C>T missense_variant ORF1ab_pp1ab T6889M 6.32e-1 BA.2.56
V5287 64G>A missense_variant N D22N 6.66e-1 BA.2.5
V1865 8693C>T missense_variant ORF1ab_pp1a T2898I 1.00e+0 BA.2.6
V2918 17146C>T missense_variant ORF1ab_pp1ab R5716C -6.32e-1 BA.2.6
V4859 31A>G missense_variant ORF7a T11A 7.07e-1 BA.2.6
V6233 2550T>C synonymous_variant ORF1ab_pp1a D850D 1.00e+0 BA.2.6
V7464 12135C>T synonymous_variant ORF1ab_pp1a L4045L 7.07e-1 BA.2.6
V8137 17358A>G synonymous_variant ORF1ab_pp1ab K5786K 8.16e-1 BA.2.6
V8499 20193C>T synonymous_variant ORF1ab_pp1ab F6731F 1.00e+0 BA.2.6
V8578 20925T>C synonymous_variant ORF1ab_pp1ab N6975N 1.00e+0 BA.2.6
V3206 19123A>G missense_variant ORF1ab_pp1ab S6375G 8.66e-1 BA.2.75.2
V5087 52C>T stop_gained ORF8 Q18* 7.30e-1 BA.2.75.2
V74 -56G>T upstream_gene_variant ORF1ab_pp1a None 7.69e-1 BA.2.75.2
V2530 13699T>C missense_variant ORF1ab_pp1ab Y4567H 1.00e+0 BA.2.75.3
V5621 1136C>T missense_variant N T379I 6.31e-1 BA.2.75.4
V2020 10054C>T missense_variant ORF1ab_pp1a L3352F 7.07e-1 BA.2.75.5
V4452 277C>T missense_variant ORF3a H93Y 7.07e-1 BA.2.75.5
V4603 686C>A missense_variant ORF3a T229N 7.07e-1 BA.2.75.5
V3667 459G>T missense_variant S M153I 7.07e-1 BA.2.75
V5837 15C>T synonymous_variant ORF1ab_pp1a V5V 7.07e-1 BA.2.75
V3939 1640C>A missense_variant S T547K 7.07e-1 BA.2.7
V8081 16908C>A synonymous_variant ORF1ab_pp1ab A5636A 7.07e-1 BA.2.9.5
V890 2999C>T missense_variant ORF1ab_pp1a T1000I 1.00e+0 BA.2.9.5
V1056 3636G>T missense_variant ORF1ab_pp1a K1212N 1.00e+0 BA.4.1.1
V3996 1960G>C missense_variant S E654Q 1.00e+0 BA.4.1.1
V7392 11643A>G synonymous_variant ORF1ab_pp1a V3881V 1.00e+0 BA.4.1.1
V9635 402A>G synonymous_variant N A134A 7.07e-1 BA.4.1.1
V6308 3138G>A synonymous_variant ORF1ab_pp1a V1046V 1.00e+0 BA.4.1.6
V5404 472G>T missense_variant N V158L 1.00e+0 BA.4.1.8
V6354 3430C>T synonymous_variant ORF1ab_pp1a L1144L 6.32e-1 BA.4.1.8
V8641 162G>A synonymous_variant S L54L 1.00e+0 BA.4.1.8
V1863 8672C>T missense_variant ORF1ab_pp1a A2891V 7.07e-1 BA.4.6.4
V288 533A>G missense_variant ORF1ab_pp1a N178S 7.07e-1 BA.4.6.4
V5885 264G>A synonymous_variant ORF1ab_pp1a L88L 7.07e-1 BA.4.6.4
V1664 7478G>T missense_variant ORF1ab_pp1a S2493I 6.32e-1 BA.5.10
V6760 6516C>T synonymous_variant ORF1ab_pp1a F2172F 8.94e-1 BA.5.10
V4724 23T>C missense_variant M I8T 6.32e-1 BA.5.1.16
V6703 6099G>A synonymous_variant ORF1ab_pp1a A2033A 1.00e+0 BA.5.11
V7921 15688C>T synonymous_variant ORF1ab_pp1ab L5230L 1.00e+0 BA.5.11
V108 -12C>T upstream_gene_variant ORF1ab_pp1a None 7.07e-1 BA.5.1.21
V2590 14107G>T missense_variant ORF1ab_pp1ab A4703S 7.07e-1 BA.5.1.21
V9351 396G>T synonymous_variant M P132P 7.96e-1 BA.5.1.22
V8758 1002C>T synonymous_variant S N334N 7.57e-1 BA.5.1.23
V5712 85C>T stop_gained ORF10 Q29* 8.93e-1 BA.5.1.26
V2571 13961C>T missense_variant ORF1ab_pp1ab T4654I 6.78e-1 BA.5.1.4
V8989 2796C>A synonymous_variant S G932G 7.06e-1 BA.5.1.4
V6770 6618C>T synonymous_variant ORF1ab_pp1a V2206V 1.00e+0 BA.5.1.5
V3154 18745G>T missense_variant ORF1ab_pp1ab D6249Y 7.74e-1 BA.5.1.6
V8187 17748T>C synonymous_variant ORF1ab_pp1ab I5916I 6.32e-1 BA.5.1.6
V5549 836C>A missense_variant N P279Q 1.00e+0 BA.5.1.7
V8281 18400C>T synonymous_variant ORF1ab_pp1ab L6134L 7.07e-1 BA.5.2.16
V9582 105G>T synonymous_variant N A35A 1.00e+0 BA.5.2.16
V5122 134G>T missense_variant ORF8 W45L 1.00e+0 BA.5.2.19
V7152 9678C>T synonymous_variant ORF1ab_pp1a Y3226Y 8.94e-1 BA.5.2.27
V7158 9714C>T synonymous_variant ORF1ab_pp1a L3238L 7.30e-1 BA.5.2.27
V619 1841C>T missense_variant ORF1ab_pp1a T614I 1.00e+0 BA.5.2.35
V6325 3228T>C synonymous_variant ORF1ab_pp1a N1076N 1.00e+0 BA.5.2.35
V1899 8942C>T missense_variant ORF1ab_pp1a S2981F 1.00e+0 BA.5.2.49
V350 820G>T missense_variant ORF1ab_pp1a V274L 7.07e-1 BA.5.2.49
V1860 8633A>G missense_variant ORF1ab_pp1a N2878S 1.00e+0 BA.5.2.7
V4485 328G>T missense_variant ORF3a A110S 7.07e-1 BA.5.2.8
V7979 16143C>T synonymous_variant ORF1ab_pp1ab V5381V 7.07e-1 BA.5.2.8
V9239 696C>T synonymous_variant ORF3a I232I 7.07e-1 BA.5.2.8
V8307 18564C>T synonymous_variant ORF1ab_pp1ab V6188V 1.00e+0 BA.5.3.3
V1442 6137C>T missense_variant ORF1ab_pp1a P2046L 8.16e-1 BA.5.3.5
V3158 18754C>T missense_variant ORF1ab_pp1ab P6252S 7.05e-1 BA.5.3.5
V9063 3357C>T synonymous_variant S N1119N 8.16e-1 BA.5.3.5
V2052 10376C>T missense_variant ORF1ab_pp1a T3459M 1.00e+0 BA.5.3
V7779 14529C>T synonymous_variant ORF1ab_pp1ab S4843S 1.00e+0 BA.5.3
V4898 125G>A missense_variant ORF7a G42D 7.07e-1 BA.5.5.1
V2342 12269C>T missense_variant ORF1ab_pp1a T4090I 8.16e-1 BA.5.5.2
V7224 10206A>G synonymous_variant ORF1ab_pp1a S3402S 1.00e+0 BA.5.5.2
V4448 266C>T missense_variant ORF3a T89I 7.07e-1 BA.5.8
V6718 6162T>C synonymous_variant ORF1ab_pp1a N2054N 1.00e+0 BA.5.8
V5055 127G>A missense_variant ORF7b A43T 1.00e+0 BC.1
V8353 18894T>C synonymous_variant ORF1ab_pp1ab H6298H 1.00e+0 BC.1
V161 178G>A missense_variant ORF1ab_pp1a V60I 6.38e-1 BE.10
V181 245_259delGTCATGTTATGGTTG disruptive_inframe_deletion ORF1ab_pp1a G82_V86del 8.07e-1 BE.10
V3654 440A>T missense_variant S K147I 9.43e-1 BE.10
V6878 7575C>T synonymous_variant ORF1ab_pp1a D2525D 1.00e+0 BE.10
V2961 17482C>T missense_variant ORF1ab_pp1ab P5828S 8.70e-1 BE.1.1.1
V5902 336C>T synonymous_variant ORF1ab_pp1a G112G 8.70e-1 BE.1.1.1
V6223 2481T>C synonymous_variant ORF1ab_pp1a D827D 9.57e-1 BE.1.1.1
V6503 4636C>T synonymous_variant ORF1ab_pp1a L1546L 9.57e-1 BE.1.1.1
V6898 7746T>C synonymous_variant ORF1ab_pp1a D2582D 6.45e-1 BE.1.1.1
V2073 10525C>T missense_variant ORF1ab_pp1a H3509Y 6.32e-1 BE.1.1.2
V8154 17469C>T synonymous_variant ORF1ab_pp1ab F5823F 6.32e-1 BE.1.1.2
V9080 3450G>A synonymous_variant S E1150E 8.16e-1 BE.1.2.1
V3772 752C>A missense_variant S P251H 7.07e-1 BE.1.2
V4775 373C>T missense_variant M H125Y 8.16e-1 BE.1.2
V4687 184G>T missense_variant E V62F 1.00e+0 BE.1.3
V4787 562G>T missense_variant M A188S 1.00e+0 BE.1.3
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 1.00e+0 BE.1.3
V6872 7518T>C synonymous_variant ORF1ab_pp1a D2506D 1.00e+0 BE.1.3
V8804 1353C>T synonymous_variant S Y451Y 1.00e+0 BE.1.3
V5168 211A>G missense_variant ORF8 I71V 1.00e+0 BE.4
V6162 2130C>A synonymous_variant ORF1ab_pp1a V710V 1.00e+0 BE.7
V925 3128C>T missense_variant ORF1ab_pp1a A1043V 1.00e+0 BE.7
V5668 -13C>T upstream_gene_variant ORF10 None 1.00e+0 BF.11.1
V1078 3706G>A missense_variant ORF1ab_pp1a V1236I 1.00e+0 BF.11.5
V249 405T>G missense_variant ORF1ab_pp1a S135R -6.31e-1 BF.11.5
V3454 20873A>G missense_variant ORF1ab_pp1ab K6958R 6.31e-1 BF.11.5
V5621 1136C>T missense_variant N T379I 1.00e+0 BF.11.5
V7387 11583A>G synonymous_variant ORF1ab_pp1a K3861K 1.00e+0 BF.11.5
V8434 19611C>T synonymous_variant ORF1ab_pp1ab I6537I 7.06e-1 BF.11.5
V7096 9250C>T synonymous_variant ORF1ab_pp1a L3084L 1.00e+0 BF.13
V7785 14574C>T synonymous_variant ORF1ab_pp1ab I4858I 1.00e+0 BF.13
V5038 92C>T missense_variant ORF7b S31L 1.00e+0 BF.14
V9287 15C>T synonymous_variant M N5N 7.07e-1 BF.24
V194 252_254delTAT disruptive_inframe_deletion ORF1ab_pp1a M85del 7.60e-1 BF.2
V4084 2434C>T missense_variant S P812S 9.19e-1 BF.2
V6400 3849T>C synonymous_variant ORF1ab_pp1a A1283A 8.03e-1 BF.2
V7232 10278C>T synonymous_variant ORF1ab_pp1a H3426H 8.03e-1 BF.2
V9509 30C>T synonymous_variant ORF8 I10I 9.57e-1 BF.2
V186 245G>T missense_variant ORF1ab_pp1a G82V 7.07e-1 BF.7.14
V4787 562G>T missense_variant M A188S 7.07e-1 BF.7.14
V1445 6143C>T missense_variant ORF1ab_pp1a S2048F 6.32e-1 BF.7.15
V2911 17075C>T missense_variant ORF1ab_pp1ab A5692V 8.94e-1 BF.7.15
V7148 9660A>T synonymous_variant ORF1ab_pp1a A3220A 8.88e-1 BF.7.6
V7437 11895G>A synonymous_variant ORF1ab_pp1a E3965E -6.12e-1 BF.7.6
V1264 4930G>T missense_variant ORF1ab_pp1a G1644C 7.07e-1 B
V1285 5114G>C missense_variant ORF1ab_pp1a G1705A 1.00e+0 B
V1523 6407A>C missense_variant ORF1ab_pp1a D2136A 1.00e+0 B
V1876 8784G>T missense_variant ORF1ab_pp1a K2928N 1.00e+0 B
V2146 10978G>A missense_variant ORF1ab_pp1a V3660M 1.00e+0 B
V2327 12190C>A missense_variant ORF1ab_pp1a L4064I 1.00e+0 B
V2500 13523G>T missense_variant ORF1ab_pp1ab R4508L 7.07e-1 B
V2528 13694G>T missense_variant ORF1ab_pp1ab R4565L 7.07e-1 B
V2602 14216A>T missense_variant ORF1ab_pp1ab H4739L 1.00e+0 B
V2610 14316G>T missense_variant ORF1ab_pp1ab M4772I 1.00e+0 B
V2640 14652A>T missense_variant ORF1ab_pp1ab Q4884H 1.00e+0 B
V3506 21202A>T missense_variant ORF1ab_pp1ab M7068L 1.00e+0 B
V3549 73C>T missense_variant S P25S 1.00e+0 B
V4005 2014G>T missense_variant S A672S 1.00e+0 B
V4368 122T>A missense_variant ORF3a L41H 1.00e+0 B
V4611 730G>A missense_variant ORF3a V244I 7.07e-1 B
V4739 142A>C missense_variant M I48L 1.00e+0 B
V5657 1254G>T missense_variant N Q418H 1.00e+0 B
V6018 1045T>C synonymous_variant ORF1ab_pp1a L349L 1.00e+0 B
V6392 3795A>T synonymous_variant ORF1ab_pp1a P1265P 1.00e+0 B
V6618 5433T>A synonymous_variant ORF1ab_pp1a P1811P 1.00e+0 B
V6744 6387T>A synonymous_variant ORF1ab_pp1a A2129A 1.00e+0 B
V6955 8109A>T synonymous_variant ORF1ab_pp1a V2703V 1.00e+0 B
V7789 14634C>A synonymous_variant ORF1ab_pp1ab G4878G 7.07e-1 B
V829 2785G>A missense_variant ORF1ab_pp1a E929K 7.07e-1 B
V8718 654G>A synonymous_variant S Q218Q 1.00e+0 B
V9011 2940C>T synonymous_variant S I980I 1.00e+0 B
V4643 790T>C missense_variant ORF3a Y264H 8.16e-1 BL.1
V7607 13251C>T synonymous_variant ORF1ab_pp1ab G4417G 6.11e-1 BL.1
V9388 606C>T synonymous_variant M G202G 8.16e-1 BL.1
V218 319C>T missense_variant ORF1ab_pp1a L107F 7.07e-1 BM.1.1.3
V1251 4882C>T missense_variant ORF1ab_pp1a R1628C 7.07e-1 BN.1.1
V1433 6098C>T missense_variant ORF1ab_pp1a A2033V 7.07e-1 BN.1.1
V2490 13457C>T missense_variant ORF1ab_pp1ab P4486L 7.07e-1 BN.1.1
V5095 79C>A missense_variant ORF8 Q27K 7.07e-1 BN.1.1
V5730 *4316A>G downstream_gene_variant S None 7.07e-1 BN.1.1
V6240 2592C>T synonymous_variant ORF1ab_pp1a L864L 7.07e-1 BN.1.1
V4576 628G>A missense_variant ORF3a D210N 1.00e+0 BN.1
V7491 12411C>T synonymous_variant ORF1ab_pp1a V4137V 7.07e-1 BN.1
V4046 2113G>T missense_variant S V705F 7.07e-1 BQ.1.1.10
V4424 201G>T missense_variant ORF3a K67N 7.07e-1 BQ.1.1.10
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 6.66e-1 BQ.1.1.13
V7073 9054C>T synonymous_variant ORF1ab_pp1a F3018F 7.07e-1 BQ.1.1.16
V1561 6600G>T missense_variant ORF1ab_pp1a K2200N 6.55e-1 BQ.1.1.18
V346 811C>T missense_variant ORF1ab_pp1a P271S 6.32e-1 BQ.1.1.1
V578 1692G>T missense_variant ORF1ab_pp1a K564N 7.74e-1 BQ.1.1.1
V7870 15282C>T synonymous_variant ORF1ab_pp1ab A5094A 6.32e-1 BQ.1.1.1
V1457 6181G>A missense_variant ORF1ab_pp1a V2061I 1.00e+0 BQ.1.11
V5543 808G>T missense_variant N V270L 7.07e-1 BQ.1.11
V4479 313T>C missense_variant ORF3a F105L 7.07e-1 BQ.1.1.20
V4896 123G>T missense_variant ORF7a E41D 1.00e+0 BQ.1.1.20
V7083 9159A>T synonymous_variant ORF1ab_pp1a V3053V 7.07e-1 BQ.1.1.20
V9626 337C>T synonymous_variant N L113L 7.07e-1 BQ.1.1.20
V4687 184G>T missense_variant E V62F 6.69e-1 BQ.1.1.22
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 7.89e-1 BQ.1.1.22
V6872 7518T>C synonymous_variant ORF1ab_pp1a D2506D 6.32e-1 BQ.1.1.22
V4839 181G>C missense_variant ORF6 D61H 7.07e-1 BQ.1.1.24
V4841 182A>T missense_variant ORF6 D61V 7.07e-1 BQ.1.1.24
V4687 184G>T missense_variant E V62F 8.16e-1 BQ.1.1.28
V6023 1122C>T synonymous_variant ORF1ab_pp1a H374H 8.16e-1 BQ.1.1.28
V6336 3297G>A synonymous_variant ORF1ab_pp1a V1099V 1.00e+0 BQ.1.1.28
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 1.00e+0 BQ.1.1.28
V6872 7518T>C synonymous_variant ORF1ab_pp1a D2506D 8.16e-1 BQ.1.1.28
V3495 21108G>T missense_variant ORF1ab_pp1ab Q7036H 1.00e+0 BQ.1.1.2
V3806 865G>A missense_variant S V289I 1.00e+0 BQ.1.1.2
V4687 184G>T missense_variant E V62F 1.00e+0 BQ.1.1.2
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 7.07e-1 BQ.1.1.2
V7864 15228T>C synonymous_variant ORF1ab_pp1ab D5076D 1.00e+0 BQ.1.1.2
V8001 16311C>T synonymous_variant ORF1ab_pp1ab D5437D 1.00e+0 BQ.1.1.2
V830 2788G>A missense_variant ORF1ab_pp1a D930N 1.00e+0 BQ.1.1.2
V8302 18549T>C synonymous_variant ORF1ab_pp1ab D6183D 1.00e+0 BQ.1.1.2
V4687 184G>T missense_variant E V62F 7.74e-1 BQ.1.13.1
V521 1492G>A missense_variant ORF1ab_pp1a A498T 6.32e-1 BQ.1.13.1
V7228 10242C>T synonymous_variant ORF1ab_pp1a N3414N 6.32e-1 BQ.1.13.1
V9410 120A>G synonymous_variant ORF6 L40L 6.32e-1 BQ.1.13.1
V5544 812C>T missense_variant N T271I 7.07e-1 BQ.1.1.3
V7500 12498C>T synonymous_variant ORF1ab_pp1a D4166D 9.11e-1 BQ.1.13
V4687 184G>T missense_variant E V62F 7.83e-1 BQ.1.1.6
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 8.95e-1 BQ.1.1.6
V6872 7518T>C synonymous_variant ORF1ab_pp1a D2506D 9.14e-1 BQ.1.1.6
V1561 6600G>T missense_variant ORF1ab_pp1a K2200N 1.00e+0 BQ.1.1.7
V6391 3792T>C synonymous_variant ORF1ab_pp1a H1264H 1.00e+0 BQ.1.1.7
V6602 5310C>T synonymous_variant ORF1ab_pp1a Y1770Y 1.00e+0 BQ.1.1.7
V2243 11495A>G missense_variant ORF1ab_pp1a K3832R 1.00e+0 BQ.1.1.8
V2487 13450G>A missense_variant ORF1ab_pp1ab D4484N 7.07e-1 BQ.1.1.8
V4687 184G>T missense_variant E V62F 7.07e-1 BQ.1.1.8
V5410 497C>T missense_variant N T166I 7.07e-1 BQ.1.1.8
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 7.07e-1 BQ.1.1.8
V8799 1296C>T synonymous_variant S C432C 1.00e+0 BQ.1.1.8
V7747 14346T>C synonymous_variant ORF1ab_pp1ab D4782D 1.00e+0 BQ.1.21
V3635 425G>A missense_variant S G142D -7.50e-1 BQ.1.22
V3967 1839G>T missense_variant S Q613H 9.84e-1 BQ.1.22
V4687 184G>T missense_variant E V62F 9.85e-1 BQ.1.22
V6242 2604A>G synonymous_variant ORF1ab_pp1a V868V 7.92e-1 BQ.1.22
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 1.00e+0 BQ.1.22
V6872 7518T>C synonymous_variant ORF1ab_pp1a D2506D 1.00e+0 BQ.1.22
V5582 1018G>A missense_variant N D340N 7.38e-1 BQ.1.23
V4996 353G>A missense_variant ORF7a R118K 7.05e-1 BQ.1.24
V7672 13833C>T synonymous_variant ORF1ab_pp1ab F4611F 6.32e-1 BQ.1.24
V8275 18372G>T synonymous_variant ORF1ab_pp1ab V6124V 6.31e-1 BQ.1.24
V6446 4191C>T synonymous_variant ORF1ab_pp1a A1397A 1.00e+0 BQ.1.25
V3793 782G>T missense_variant S G261V 1.00e+0 BQ.1.8.2
V7341 11262G>A synonymous_variant ORF1ab_pp1a L3754L 8.16e-1 BQ.1.8.2
V8573 20892C>T synonymous_variant ORF1ab_pp1ab S6964S 1.00e+0 BQ.1.8.2
V398 1009G>A missense_variant ORF1ab_pp1a V337I 7.07e-1 BR.2.1
V7305 10914G>A synonymous_variant ORF1ab_pp1a L3638L 7.07e-1 BR.2.1
V6870 7503C>T synonymous_variant ORF1ab_pp1a I2501I 1.00e+0 BU.1
V8300 18540C>T synonymous_variant ORF1ab_pp1ab S6180S 1.00e+0 BU.1
V6312 3162A>T synonymous_variant ORF1ab_pp1a P1054P 9.73e-1 BW.1.1
V9260 12C>T synonymous_variant E F4F 6.22e-1 BW.1.1
V192 253_258delATGGTT conservative_inframe_deletion ORF1ab_pp1a M85_V86del 7.07e-1 BW.1
V2484 13447A>G missense_variant ORF1ab_pp1ab K4483E 9.54e-1 C.35
V1017 3472C>T missense_variant ORF1ab_pp1a P1158S 8.94e-1 C.36.3
V24 -161G>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 C.36.3
V2457 13234A>G missense_variant ORF1ab_pp1ab T4412A 1.00e+0 C.36.3
V5382 404C>T missense_variant N T135I 8.94e-1 C.36.3
V6368 3567C>T synonymous_variant ORF1ab_pp1a S1189S 1.00e+0 C.36.3
V6922 7881C>T synonymous_variant ORF1ab_pp1a D2627D 1.00e+0 C.36.3
V8759 1008C>T synonymous_variant S C336C 7.06e-1 C.36.3
V9424 45T>C synonymous_variant ORF7a C15C 1.00e+0 C.36.3
V9811 1236C>T synonymous_variant N S412S 1.00e+0 C.36.3
V1400 5990C>T missense_variant ORF1ab_pp1a A1997V 6.32e-1 C.36
V3304 19838G>T missense_variant ORF1ab_pp1ab S6613I 6.32e-1 C.36
V601 1770G>T missense_variant ORF1ab_pp1a L590F 6.32e-1 C.36
V6577 5127C>T synonymous_variant ORF1ab_pp1a N1709N 6.32e-1 C.36
V5401 464C>T missense_variant N A155V 9.24e-1 CH.1.1
V596 1750A>G missense_variant ORF1ab_pp1a M584V 9.61e-1 CH.1.1
V7358 11409C>T synonymous_variant ORF1ab_pp1a Y3803Y 7.89e-1 CH.1.1
V9195 318C>T synonymous_variant ORF3a L106L 9.25e-1 CH.1.1
V950 3221C>T missense_variant ORF1ab_pp1a A1074V 9.34e-1 CH.1.1
V9369 483C>T synonymous_variant M I161I 7.07e-1 CQ.2
V2754 15811G>T missense_variant ORF1ab_pp1ab D5271Y 1.00e+0 DF.1
V5083 40G>A missense_variant ORF8 A14T 1.00e+0 DF.1
V9093 3522T>C synonymous_variant S A1174A 1.00e+0 DF.1
V4246 3601C>A missense_variant S Q1201K 7.07e-1 DJ.1.1
V6066 1458T>C synonymous_variant ORF1ab_pp1a A486A 7.07e-1 DJ.1.1
V5952 639C>T synonymous_variant ORF1ab_pp1a C213C 7.07e-1 P.1.15
V7329 11157T>C synonymous_variant ORF1ab_pp1a Y3719Y 7.07e-1 P.1.15
V8135 17328G>T synonymous_variant ORF1ab_pp1ab V5776V 7.07e-1 P.1.15
V2899 17014G>T missense_variant ORF1ab_pp1ab V5672L 1.00e+0 P.1.2
V5605 1102C>T missense_variant N P368S 1.00e+0 P.1.2
V6921 7875C>T synonymous_variant ORF1ab_pp1a S2625S 1.00e+0 P.1.2
V6019 1077C>T synonymous_variant ORF1ab_pp1a Y359Y 6.26e-1 P.1.7
V6663 5805C>T synonymous_variant ORF1ab_pp1a I1935I 6.26e-1 P.1.7
V2496 13498G>T missense_variant ORF1ab_pp1ab G4500C 7.07e-1 Q.3
V2905 17067G>T missense_variant ORF1ab_pp1ab E5689D 7.07e-1 Q.3
V5061 -4G>T upstream_gene_variant ORF8 None 7.07e-1 Q.3
V8327 18696G>A synonymous_variant ORF1ab_pp1ab A6232A 1.00e+0 Q.4
V123 70C>T missense_variant ORF1ab_pp1a R24C 6.71e-1 W.4
V4240 3573G>T missense_variant S K1191N 7.07e-1 XAZ
V6489 4530C>T synonymous_variant ORF1ab_pp1a S1510S 1.00e+0 XAZ
V2485 13448A>G missense_variant ORF1ab_pp1ab K4483R 1.00e+0 AY.133
V3879 1337G>T missense_variant S G446V 7.06e-1 AY.133
V4663 26C>T missense_variant E T9I 1.00e+0 AY.133
V6349 3369C>T synonymous_variant ORF1ab_pp1a N1123N 1.00e+0 AY.133
V6395 3819C>T synonymous_variant ORF1ab_pp1a D1273D 1.00e+0 AY.133
V5894 291C>T synonymous_variant ORF1ab_pp1a Y97Y 1.00e+0 AY.25.1.2
V6095 1647C>T synonymous_variant ORF1ab_pp1a S549S 1.00e+0 AY.25.1.2
V9389 609C>T synonymous_variant M N203N 1.00e+0 AY.25.1.2
V1516 6383C>T missense_variant ORF1ab_pp1a A2128V 1.00e+0 B.1.110
V5385 417G>T missense_variant N L139F 1.00e+0 B.1.110
V5469 614C>T missense_variant N T205I 1.00e+0 B.1.110
V1302 5279C>T missense_variant ORF1ab_pp1a T1760I 6.14e-1 B.1.1.144
V2515 13625A>G missense_variant ORF1ab_pp1ab N4542S -6.95e-1 B.1.1.144
V2551 13858G>T missense_variant ORF1ab_pp1ab G4620C -6.95e-1 B.1.1.144
V2691 15174G>T missense_variant ORF1ab_pp1ab M5058I 6.14e-1 B.1.1.144
V2949 17394G>T missense_variant ORF1ab_pp1ab M5798I -6.95e-1 B.1.1.144
V4619 760G>A missense_variant ORF3a G254R 1.00e+0 B.1.1.144
V7900 15540T>C synonymous_variant ORF1ab_pp1ab Y5180Y -6.95e-1 B.1.1.144
V9772 1008C>T synonymous_variant N A336A 7.20e-1 B.1.1.144
V2135 10930C>T missense_variant ORF1ab_pp1a L3644F 1.00e+0 B.1.1.148
V4760 245T>C missense_variant M I82T 1.00e+0 B.1.1.148
V488 1334G>T missense_variant ORF1ab_pp1a G445V 1.00e+0 B.1.1.148
V507 1416G>T missense_variant ORF1ab_pp1a E472D 1.00e+0 B.1.1.148
V5341 188A>G missense_variant N D63G 1.00e+0 B.1.1.148
V8332 18747C>T synonymous_variant ORF1ab_pp1ab D6249D 1.00e+0 B.1.1.148
V8564 20793C>T synonymous_variant ORF1ab_pp1ab D6931D 1.00e+0 B.1.1.148
V1810 8390C>T missense_variant ORF1ab_pp1a S2797F 7.05e-1 B.1.1.196
V6175 2175A>G synonymous_variant ORF1ab_pp1a E725E 1.00e+0 B.1.1.196
V626 1870C>T missense_variant ORF1ab_pp1a L624F 1.00e+0 B.1.1.196
V882 2977G>T missense_variant ORF1ab_pp1a G993C 1.00e+0 B.1.1.196
V2778 16111C>T missense_variant ORF1ab_pp1ab P5371S 1.00e+0 B.1.1.299
V4513 418C>T missense_variant ORF3a L140F 7.06e-1 B.1.1.312
V5634 1167G>T missense_variant N Q389H 1.00e+0 B.1.1.312
V9617 261C>T synonymous_variant N Y87Y 1.00e+0 B.1.1.312
V2276 11787G>T missense_variant ORF1ab_pp1a K3929N 1.00e+0 B.1.1.329
V2908 17072C>T missense_variant ORF1ab_pp1ab T5691I 7.04e-1 B.1.1.349
V3551 76C>T missense_variant S P26S 1.00e+0 B.1.1.349
V6570 5082T>C synonymous_variant ORF1ab_pp1a A1694A 1.00e+0 B.1.1.349
V2375 12524C>T missense_variant ORF1ab_pp1a T4175I 7.06e-1 B.1.1.374
V6257 2709T>C synonymous_variant ORF1ab_pp1a A903A 7.06e-1 B.1.1.374
V8449 19719C>T synonymous_variant ORF1ab_pp1ab V6573V 7.06e-1 B.1.1.374
V8592 20991G>T synonymous_variant ORF1ab_pp1ab A6997A 1.00e+0 B.1.1.374
V2220 11292G>T missense_variant ORF1ab_pp1a E3764D 1.00e+0 B.1.1.397
V1607 6848C>T missense_variant ORF1ab_pp1a T2283I 1.00e+0 B.1.1.409
V4015 2031G>T missense_variant S Q677H 7.04e-1 B.1.1.412
V6732 6303C>T synonymous_variant ORF1ab_pp1a D2101D 1.00e+0 B.1.1.412
V7758 14412C>T synonymous_variant ORF1ab_pp1ab P4804P 1.00e+0 B.1.1.412
V103 -20G>T upstream_gene_variant ORF1ab_pp1a None 7.06e-1 B.1.1.448
V2573 13977G>T missense_variant ORF1ab_pp1ab K4659N 7.06e-1 B.1.1.448
V2621 14444C>T missense_variant ORF1ab_pp1ab A4815V 7.06e-1 B.1.1.448
V2831 16595C>T missense_variant ORF1ab_pp1ab A5532V 7.06e-1 B.1.1.448
V9567 48G>A synonymous_variant N T16T 7.06e-1 B.1.1.448
V1217 4697G>A missense_variant ORF1ab_pp1a R1566K 6.03e-1 B.1.153
V1264 4930G>T missense_variant ORF1ab_pp1a G1644C 9.36e-1 B.1.153
V1285 5114G>C missense_variant ORF1ab_pp1a G1705A 9.67e-1 B.1.153
V1523 6407A>C missense_variant ORF1ab_pp1a D2136A 7.55e-1 B.1.153
V1876 8784G>T missense_variant ORF1ab_pp1a K2928N 9.00e-1 B.1.153
V1982 9764C>T missense_variant ORF1ab_pp1a T3255I 8.97e-1 B.1.153
V2146 10978G>A missense_variant ORF1ab_pp1a V3660M 8.97e-1 B.1.153
V2327 12190C>A missense_variant ORF1ab_pp1a L4064I 8.62e-1 B.1.153
V2500 13523G>T missense_variant ORF1ab_pp1ab R4508L 6.51e-1 B.1.153
V2528 13694G>T missense_variant ORF1ab_pp1ab R4565L 7.18e-1 B.1.153
V2602 14216A>T missense_variant ORF1ab_pp1ab H4739L 8.64e-1 B.1.153
V2640 14652A>T missense_variant ORF1ab_pp1ab Q4884H 9.36e-1 B.1.153
V3506 21202A>T missense_variant ORF1ab_pp1ab M7068L 8.28e-1 B.1.153
V3549 73C>T missense_variant S P25S 9.32e-1 B.1.153
V3900 1433C>A missense_variant S T478K 9.66e-1 B.1.153
V4005 2014G>T missense_variant S A672S 8.97e-1 B.1.153
V4368 122T>A missense_variant ORF3a L41H 9.36e-1 B.1.153
V4611 730G>A missense_variant ORF3a V244I 9.00e-1 B.1.153
V4702 -31A>T upstream_gene_variant M None 8.64e-1 B.1.153
V4739 142A>C missense_variant M I48L 9.36e-1 B.1.153
V5128 151G>T missense_variant ORF8 A51S 8.62e-1 B.1.153
V5195 302G>A missense_variant ORF8 R101H 7.18e-1 B.1.153
V5670 -12C>T upstream_gene_variant ORF10 None 8.28e-1 B.1.153
V6018 1045T>C synonymous_variant ORF1ab_pp1a L349L 6.41e-1 B.1.153
V6265 2772C>T synonymous_variant ORF1ab_pp1a F924F -7.92e-1 B.1.153
V6392 3795A>T synonymous_variant ORF1ab_pp1a P1265P 9.00e-1 B.1.153
V6618 5433T>A synonymous_variant ORF1ab_pp1a P1811P 9.67e-1 B.1.153
V6744 6387T>A synonymous_variant ORF1ab_pp1a A2129A 6.43e-1 B.1.153
V6955 8109A>T synonymous_variant ORF1ab_pp1a V2703V 6.80e-1 B.1.153
V7281 10689C>T synonymous_variant ORF1ab_pp1a C3563C 9.66e-1 B.1.153
V7789 14634C>A synonymous_variant ORF1ab_pp1ab G4878G 9.36e-1 B.1.153
V829 2785G>A missense_variant ORF1ab_pp1a E929K 7.25e-1 B.1.153
V852 2875C>T missense_variant ORF1ab_pp1a P959S 9.66e-1 B.1.153
V8718 654G>A synonymous_variant S Q218Q 9.32e-1 B.1.153
V9011 2940C>T synonymous_variant S I980I 9.36e-1 B.1.153
V97 -25C>T upstream_gene_variant ORF1ab_pp1a None -8.97e-1 B.1.153
V9747 924C>T synonymous_variant N A308A 9.32e-1 B.1.153
V3524 25C>T missense_variant S P9S 7.06e-1 B.1.177.23
V1607 6848C>T missense_variant ORF1ab_pp1a T2283I 7.06e-1 B.1.177.72
V2595 14144C>T missense_variant ORF1ab_pp1ab P4715L -7.06e-1 B.1.177.72
V35 -119C>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 B.1.177.72
V1523 6407A>C missense_variant ORF1ab_pp1a D2136A 1.00e+0 B.1.179
V1845 8596G>A missense_variant ORF1ab_pp1a V2866M 1.00e+0 B.1.179
V1876 8784G>T missense_variant ORF1ab_pp1a K2928N 1.00e+0 B.1.179
V2495 13498G>A missense_variant ORF1ab_pp1ab G4500S 1.00e+0 B.1.179
V2500 13523G>T missense_variant ORF1ab_pp1ab R4508L 1.00e+0 B.1.179
V2528 13694G>T missense_variant ORF1ab_pp1ab R4565L 1.00e+0 B.1.179
V2602 14216A>T missense_variant ORF1ab_pp1ab H4739L 1.00e+0 B.1.179
V2640 14652A>T missense_variant ORF1ab_pp1ab Q4884H 1.00e+0 B.1.179
V3485 21040C>T missense_variant ORF1ab_pp1ab R7014C 1.00e+0 B.1.179
V3506 21202A>T missense_variant ORF1ab_pp1ab M7068L 1.00e+0 B.1.179
V3549 73C>T missense_variant S P25S 1.00e+0 B.1.179
V3900 1433C>A missense_variant S T478K 1.00e+0 B.1.179
V4005 2014G>T missense_variant S A672S 1.00e+0 B.1.179
V4566 579G>T missense_variant ORF3a W193C 1.00e+0 B.1.179
V4611 730G>A missense_variant ORF3a V244I 1.00e+0 B.1.179
V4702 -31A>T upstream_gene_variant M None 1.00e+0 B.1.179
V4739 142A>C missense_variant M I48L 1.00e+0 B.1.179
V5128 151G>T missense_variant ORF8 A51S 1.00e+0 B.1.179
V5670 -12C>T upstream_gene_variant ORF10 None 1.00e+0 B.1.179
V6018 1045T>C synonymous_variant ORF1ab_pp1a L349L 1.00e+0 B.1.179
V6069 1473G>T synonymous_variant ORF1ab_pp1a V491V 1.00e+0 B.1.179
V6207 2385C>T synonymous_variant ORF1ab_pp1a D795D 1.00e+0 B.1.179
V6392 3795A>T synonymous_variant ORF1ab_pp1a P1265P 1.00e+0 B.1.179
V6744 6387T>A synonymous_variant ORF1ab_pp1a A2129A 1.00e+0 B.1.179
V6784 6741C>T synonymous_variant ORF1ab_pp1a T2247T 1.00e+0 B.1.179
V6955 8109A>T synonymous_variant ORF1ab_pp1a V2703V 1.00e+0 B.1.179
V7281 10689C>T synonymous_variant ORF1ab_pp1a C3563C 1.00e+0 B.1.179
V7789 14634C>A synonymous_variant ORF1ab_pp1ab G4878G 1.00e+0 B.1.179
V852 2875C>T missense_variant ORF1ab_pp1a P959S 1.00e+0 B.1.179
V8553 20688A>T synonymous_variant ORF1ab_pp1ab S6896S 1.00e+0 B.1.179
V9011 2940C>T synonymous_variant S I980I 1.00e+0 B.1.179
V9540 240A>T synonymous_variant ORF8 T80T 1.00e+0 B.1.179
V9673 546C>T synonymous_variant N A182A 1.00e+0 B.1.179
V9747 924C>T synonymous_variant N A308A 1.00e+0 B.1.179
V9774 1015T>C synonymous_variant N L339L 1.00e+0 B.1.179
V1437 6108G>T missense_variant ORF1ab_pp1a M2036I 1.00e+0 B.1.192
V2080 10581G>T missense_variant ORF1ab_pp1a M3527I 7.04e-1 B.1.192
V2082 10609A>G missense_variant ORF1ab_pp1a N3537D 7.04e-1 B.1.192
V2990 17735C>T missense_variant ORF1ab_pp1ab T5912I 7.04e-1 B.1.192
V3067 18167C>T missense_variant ORF1ab_pp1ab T6056I 1.00e+0 B.1.192
V5727 *4306G>T downstream_gene_variant S None 1.00e+0 B.1.192
V9813 1245C>T synonymous_variant N D415D 7.04e-1 B.1.192
V1761 8062C>T missense_variant ORF1ab_pp1a L2688F 1.00e+0 B.1.220
V342 794C>T missense_variant ORF1ab_pp1a T265I 7.03e-1 B.1.220
V3551 76C>T missense_variant S P26S 1.00e+0 B.1.220
V4312 37G>T missense_variant ORF3a V13L 1.00e+0 B.1.220
V4339 79G>T missense_variant ORF3a D27Y 1.00e+0 B.1.220
V4406 171G>T missense_variant ORF3a Q57H 1.00e+0 B.1.220
V5092 71C>T missense_variant ORF8 S24L 1.00e+0 B.1.220
V6419 3990G>A synonymous_variant ORF1ab_pp1a P1330P 1.00e+0 B.1.220
V6517 4734C>T synonymous_variant ORF1ab_pp1a N1578N 1.00e+0 B.1.220
V6622 5460A>G synonymous_variant ORF1ab_pp1a T1820T 1.00e+0 B.1.220
V6806 6900C>T synonymous_variant ORF1ab_pp1a T2300T 1.00e+0 B.1.220
V7132 9571C>T synonymous_variant ORF1ab_pp1a L3191L 1.00e+0 B.1.220
V7574 12999C>T synonymous_variant ORF1ab_pp1a H4333H 1.00e+0 B.1.220
V8901 2049G>T synonymous_variant S R683R 1.00e+0 B.1.220
V9582 105G>T synonymous_variant N A35A 1.00e+0 B.1.220
V5429 554G>T missense_variant N R185L 1.00e+0 B.1.223
V1596 6800G>A missense_variant ORF1ab_pp1a R2267K 7.03e-1 B.1.333
V6068 1473G>A synonymous_variant ORF1ab_pp1a V491V 1.00e+0 B.1.333
V9544 273G>A synonymous_variant ORF8 Q91Q 1.00e+0 B.1.333
V260 421_429delAAGTCATTT conservative_inframe_deletion ORF1ab_pp1a K141_F143del 7.06e-1 B.1.337
V3894 1424C>T missense_variant S A475V 7.06e-1 B.1.337
V8414 19410A>G synonymous_variant ORF1ab_pp1ab Q6470Q 1.00e+0 B.1.337
V1381 5812G>T missense_variant ORF1ab_pp1a A1938S 1.00e+0 B.1.420
V6833 7155C>T synonymous_variant ORF1ab_pp1a I2385I 1.00e+0 B.1.420
V7610 13272C>T synonymous_variant ORF1ab_pp1ab Y4424Y 1.00e+0 B.1.420
V7664 13791G>T synonymous_variant ORF1ab_pp1ab L4597L 1.00e+0 B.1.420
V2194 11186A>G missense_variant ORF1ab_pp1a Q3729R 1.00e+0 B.1.456
V3812 925G>C missense_variant S E309Q 1.00e+0 B.1.456
V5639 1193C>T missense_variant N A398V 7.02e-1 B.1.456
V7975 16122C>T synonymous_variant ORF1ab_pp1ab C5374C 1.00e+0 B.1.456
V9827 57C>T synonymous_variant ORF10 C19C 1.00e+0 B.1.456
V1763 8069C>T missense_variant ORF1ab_pp1a A2690V 7.06e-1 B.1.471
V511 1420G>T missense_variant ORF1ab_pp1a A474S 7.06e-1 B.1.471
V7329 11157T>C synonymous_variant ORF1ab_pp1a Y3719Y 7.06e-1 B.1.471
V9662 510C>T synonymous_variant N G170G 7.06e-1 B.1.471
V4371 124C>T missense_variant ORF3a P42S 1.00e+0 B.1.548
V7272 10603C>T synonymous_variant ORF1ab_pp1a L3535L 1.00e+0 B.1.548
V848 2852C>T missense_variant ORF1ab_pp1a T951I 8.32e-1 B.1.567
V4043 2102C>T missense_variant S A701V 6.35e-1 B.1.600
V6422 4011C>T synonymous_variant ORF1ab_pp1a Y1337Y 9.22e-1 B.1.600
V154 145G>T missense_variant ORF1ab_pp1a G49C 1.00e+0 B.1.631
V5489 634G>T missense_variant N G212C -7.06e-1 B.1.631
V9282 220C>T synonymous_variant E L74L 7.06e-1 B.1.631
V5416 532G>A missense_variant N G178S 1.00e+0 BA.1.2
V340 753G>T missense_variant ORF1ab_pp1a L251F 7.02e-1 BA.2.10.4
V70 -60C>T upstream_gene_variant ORF1ab_pp1a None 7.02e-1 BA.2.10.4
V8438 19632T>C synonymous_variant ORF1ab_pp1ab A6544A 7.02e-1 BA.2.10.4
V912 3065C>T missense_variant ORF1ab_pp1a T1022I 7.02e-1 BA.2.10.4
V9405 90T>C synonymous_variant ORF6 D30D 8.65e-1 BA.2.35
V438 1162C>T missense_variant ORF1ab_pp1a H388Y 1.00e+0 BA.2.9.6
V6491 4545C>T synonymous_variant ORF1ab_pp1a S1515S 1.00e+0 BA.2.9.6
V2120 10844C>T missense_variant ORF1ab_pp1a A3615V 1.00e+0 BA.5.2.32
V6495 4605A>G synonymous_variant ORF1ab_pp1a V1535V 1.00e+0 BA.5.2.32
V8263 18261G>T synonymous_variant ORF1ab_pp1ab V6087V 1.00e+0 BA.5.2.32
V8964 2568C>T synonymous_variant S N856N 1.00e+0 BA.5.2.32
V1210 4651A>G missense_variant ORF1ab_pp1a I1551V 1.00e+0 BA.5.2.39
V3638 432_434delTTA disruptive_inframe_deletion S Y145del 1.00e+0 BA.5.2.39
V4015 2031G>T missense_variant S Q677H 1.00e+0 BA.5.2.39
V4448 266C>T missense_variant ORF3a T89I 1.00e+0 BA.5.2.39
V4687 184G>T missense_variant E V62F 1.00e+0 BA.5.2.39
V5939 564C>T synonymous_variant ORF1ab_pp1a N188N 1.00e+0 BA.5.2.39
V1 -245C>T upstream_gene_variant ORF1ab_pp1a None 7.04e-1 BC.2
V4312 37G>T missense_variant ORF3a V13L 1.00e+0 BE.1.4.2
V9806 1209C>T synonymous_variant N F403F 1.00e+0 BE.1.4.2
V102 -20G>A upstream_gene_variant ORF1ab_pp1a None 7.06e-1 BE.8
V3470 20940G>T missense_variant ORF1ab_pp1ab K6980N 7.06e-1 BE.8
V9304 159C>T synonymous_variant M F53F 7.06e-1 BE.8
V3259 19598C>T missense_variant ORF1ab_pp1ab A6533V 7.05e-1 BF.30
V4047 2117C>T missense_variant S A706V 1.00e+0 BF.30
V4742 187G>A missense_variant M A63T -7.05e-1 BF.30
V6228 2517G>T synonymous_variant ORF1ab_pp1a V839V 1.00e+0 BF.30
V7744 14335C>T synonymous_variant ORF1ab_pp1ab L4779L -7.05e-1 BF.30
V2472 13353G>T missense_variant ORF1ab_pp1ab K4451N 1.00e+0 BF.7.12
V3638 432_434delTTA disruptive_inframe_deletion S Y145del 7.06e-1 BF.7.12
V2382 12536G>A missense_variant ORF1ab_pp1a R4179K 8.64e-1 BG.4
V7925 15696C>T synonymous_variant ORF1ab_pp1ab A5232A 1.00e+0 BL.3
V5730 *4316A>G downstream_gene_variant S None 8.85e-1 BN.1.8
V7491 12411C>T synonymous_variant ORF1ab_pp1a V4137V 7.00e-1 BN.1.8
V4246 3601C>A missense_variant S Q1201K 7.06e-1 BN.5
V7816 14850T>C synonymous_variant ORF1ab_pp1ab A4950A 7.06e-1 BN.5
V9107 3600C>A synonymous_variant S L1200L 7.06e-1 BN.5
V3295 19791A>T missense_variant ORF1ab_pp1ab E6597D 7.06e-1 BQ.1.1.34
V211 292G>A missense_variant ORF1ab_pp1a G98S 7.06e-1 BQ.1.1.9
V460 1249C>T missense_variant ORF1ab_pp1a H417Y 7.06e-1 BQ.1.1.9
V4687 184G>T missense_variant E V62F 7.06e-1 BQ.1.1.9
V6657 5775C>T synonymous_variant ORF1ab_pp1a F1925F 7.06e-1 BQ.1.1.9
V6872 7518T>C synonymous_variant ORF1ab_pp1a D2506D 7.06e-1 BQ.1.1.9
V7023 8691C>T synonymous_variant ORF1ab_pp1a Y2897Y 7.06e-1 BQ.1.1.9
V8804 1353C>T synonymous_variant S Y451Y 7.06e-1 BQ.1.1.9
V1809 8388G>T missense_variant ORF1ab_pp1a M2796I 1.00e+0 BQ.1.19
V3703 548A>G missense_variant S Q183R 1.00e+0 BQ.1.19
V9374 516A>G synonymous_variant M T172T 7.06e-1 BQ.1.19
V8051 16731C>T synonymous_variant ORF1ab_pp1ab Y5577Y 1.00e+0 C.13
V2645 14738A>G missense_variant ORF1ab_pp1ab Y4913C 1.00e+0 C.1
V3508 21204G>T missense_variant ORF1ab_pp1ab M7068I 1.00e+0 C.1
V4596 668C>T missense_variant ORF3a T223I 9.46e-1 C.1
V8970 2631G>T synonymous_variant S L877L 1.00e+0 C.1
V2325 12145A>G missense_variant ORF1ab_pp1a I4049V 1.00e+0 C.26
V5940 567C>T synonymous_variant ORF1ab_pp1a N189N 7.05e-1 C.26
V813 2708C>T missense_variant ORF1ab_pp1a A903V 1.00e+0 C.26
V8470 19971C>T synonymous_variant ORF1ab_pp1ab P6657P 7.05e-1 C.26
V8521 20415G>T synonymous_variant ORF1ab_pp1ab P6805P 1.00e+0 C.26
V4240 3573G>T missense_variant S K1191N 1.00e+0 C.37.1
V5557 887C>T missense_variant N T296I 1.00e+0 C.37.1
V7970 16098C>T synonymous_variant ORF1ab_pp1ab V5366V 1.00e+0 C.37.1
V489 1336C>T missense_variant ORF1ab_pp1a L446F 1.00e+0 C.4
V6123 1845C>T synonymous_variant ORF1ab_pp1a N615N 1.00e+0 C.4
V8485 20091A>G synonymous_variant ORF1ab_pp1ab L6697L 1.00e+0 C.4
V3520 13C>T missense_variant S L5F 7.03e-1 CA.2
V74 -56G>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 CA.2
V7703 14049T>C synonymous_variant ORF1ab_pp1ab D4683D 1.00e+0 CA.2
V1174 4490C>T missense_variant ORF1ab_pp1a P1497L 8.15e-1 CC.1
V6167 2142G>A synonymous_variant ORF1ab_pp1a K714K 8.15e-1 CC.1
V7022 8685C>T synonymous_variant ORF1ab_pp1a I2895I 8.15e-1 CC.1
V9755 945C>T synonymous_variant N F315F 1.00e+0 CC.1
V184 245_253delGTCATGTTA disruptive_inframe_deletion ORF1ab_pp1a G82_M85delinsV 1.00e+0 CG.1
V4399 161C>T missense_variant ORF3a A54V 1.00e+0 CG.1
V7200 9987C>T synonymous_variant ORF1ab_pp1a F3329F 1.00e+0 CG.1
V9588 123G>A synonymous_variant N R41R 1.00e+0 CG.1
V1056 3636G>T missense_variant ORF1ab_pp1a K1212N 1.00e+0 DC.1
V78 -49C>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 DC.1
V85 -44C>T upstream_gene_variant ORF1ab_pp1a None 1.00e+0 DC.1
V2538 13764G>T missense_variant ORF1ab_pp1ab M4588I 7.06e-1 DE.1
V2194 11186A>G missense_variant ORF1ab_pp1a Q3729R 8.63e-1 N.6
V5530 751G>T missense_variant N A251S 1.00e+0 N.6
V6892 7683C>T synonymous_variant ORF1ab_pp1a Y2561Y 8.63e-1 N.6
V7213 10131G>T synonymous_variant ORF1ab_pp1a V3377V 8.63e-1 N.6
V826 2782G>T missense_variant ORF1ab_pp1a D928Y 1.00e+0 N.6
V1732 7866G>T missense_variant ORF1ab_pp1a K2622N 7.06e-1 P.7
V6302 3075G>T synonymous_variant ORF1ab_pp1a V1025V 7.06e-1 P.7
V6452 4269C>T synonymous_variant ORF1ab_pp1a Y1423Y 1.00e+0 P.7
V7035 8808C>T synonymous_variant ORF1ab_pp1a T2936T 1.00e+0 P.7
V9748 927C>T synonymous_variant N P309P 6.29e-1 P.7
V1102 3850C>T missense_variant ORF1ab_pp1a P1284S 1.00e+0 W.3





Manual curation of mutation (1524C>T)-related literature from PubMed

The pubmed.mineR and pubmed-mapper were utilized for extracting literature from PubMed, followed by manual filtering.
Note: PubMed: (COVID-19 [Title/Abstract] OR SARS-COV-2 [Title/Abstract]) AND (DNA mutation [Title/Abstract] OR Protein mutation-1 letter [Title/Abstract] OR Protein mutation-3 letter [Title/Abstract]).

DNA level Protein level Paper title Journal name Publication year Pubmed ID