Browsing Mutation Sites on Lineage BA.2.24


Overview of the global distribution of genome sequences on lineage BA.2.24.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage BA.2.24.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage BA.2.24.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 BA.2.24 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V25 BA.2.24 5.81e-2 GU280_gp01_pp1a ORF1ab_pp1a 106 -160C>T upstream_gene_variant None None
V2918 BA.2.24 9.99e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 17410 17146C>T missense_variant R5716C Arg5716Cys
V2930 BA.2.24 3.26e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 17533 17269G>A missense_variant G5757S Gly5757Ser
V3015 BA.2.24 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 18163 17899A>G missense_variant I5967V Ile5967Val
V1982 BA.2.24 9.96e-1 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V3273 BA.2.24 9.99e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19955 19691C>T missense_variant T6564I Thr6564Ile
V598 BA.2.24 2.40e-2 GU280_gp01_pp1a ORF1ab_pp1a 2019 1754T>C missense_variant M585T Met585Thr
V3520 BA.2.24 1.70e-2 GU280_gp02 S 21575 13C>T missense_variant L5F Leu5Phe
V3534 BA.2.24 9.99e-1 GU280_gp02 S 21618 56C>T missense_variant T19I Thr19Ile
V3544 BA.2.24 9.98e-1 GU280_gp02 S 21632 71_79delTACCCCCTG disruptive_inframe_deletion L24_A27delinsS Leu24_Ala27delinsSer
V3635 BA.2.24 9.98e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3735 BA.2.24 9.97e-1 GU280_gp02 S 22200 638T>G missense_variant V213G Val213Gly
V2163 BA.2.24 9.97e-1 GU280_gp01_pp1a ORF1ab_pp1a 11287 11023_11031delTCTGGTTTT conservative_inframe_deletion S3675_F3677del Ser3675_Phe3677del
V2167 BA.2.24 2.34e-1 GU280_gp01_pp1a ORF1ab_pp1a 11291 11026G>A missense_variant G3676S Gly3676Ser
V2169 BA.2.24 2.73e-1 GU280_gp01_pp1a ORF1ab_pp1a 11296 11031T>G missense_variant F3677L Phe3677Leu
V656 BA.2.24 1.87e-2 GU280_gp01_pp1a ORF1ab_pp1a 2246 1981G>A missense_variant G661S Gly661Ser
V3817 BA.2.24 9.97e-1 GU280_gp02 S 22577 1015G>A missense_variant G339S Gly339Ser
V3820 BA.2.24 9.97e-1 GU280_gp02 S 22578 1016G>A missense_variant G339D Gly339Asp
V3840 BA.2.24 9.98e-1 GU280_gp02 S 22674 1112C>T missense_variant S371F Ser371Phe
V3841 BA.2.24 9.98e-1 GU280_gp02 S 22679 1117T>C missense_variant S373P Ser373Pro
V3843 BA.2.24 9.98e-1 GU280_gp02 S 22686 1124C>T missense_variant S375F Ser375Phe
V3844 BA.2.24 9.98e-1 GU280_gp02 S 22688 1126A>G missense_variant T376A Thr376Ala
V3851 BA.2.24 9.98e-1 GU280_gp02 S 22775 1213G>A missense_variant D405N Asp405Asn
V3854 BA.2.24 9.98e-1 GU280_gp02 S 22786 1224A>C missense_variant R408S Arg408Ser
V3861 BA.2.24 9.98e-1 GU280_gp02 S 22813 1251G>T missense_variant K417N Lys417Asn
V3868 BA.2.24 9.98e-1 GU280_gp02 S 22882 1320T>G missense_variant N440K Asn440Lys
V3896 BA.2.24 9.99e-1 GU280_gp02 S 22992 1430G>A missense_variant S477N Ser477Asn
V3900 BA.2.24 9.99e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3911 BA.2.24 9.99e-1 GU280_gp02 S 23013 1451A>C missense_variant E484A Glu484Ala
V3922 BA.2.24 9.99e-1 GU280_gp02 S 23040 1478A>G missense_variant Q493R Gln493Arg
V3926 BA.2.24 9.99e-1 GU280_gp02 S 23055 1493A>G missense_variant Q498R Gln498Arg
V3927 BA.2.24 9.99e-1 GU280_gp02 S 23063 1501A>T missense_variant N501Y Asn501Tyr
V3930 BA.2.24 9.99e-1 GU280_gp02 S 23075 1513T>C missense_variant Y505H Tyr505His
V3969 BA.2.24 1.00e+0 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V3997 BA.2.24 9.99e-1 GU280_gp02 S 23525 1963C>T missense_variant H655Y His655Tyr
V4019 BA.2.24 1.00e+0 GU280_gp02 S 23599 2037T>G missense_variant N679K Asn679Lys
V4022 BA.2.24 1.00e+0 GU280_gp02 S 23604 2042C>A missense_variant P681H Pro681His
V4063 BA.2.24 9.99e-1 GU280_gp02 S 23854 2292C>A missense_variant N764K Asn764Lys
V4079 BA.2.24 9.99e-1 GU280_gp02 S 23948 2386G>T missense_variant D796Y Asp796Tyr
V4099 BA.2.24 1.27e-2 GU280_gp02 S 24092 2530A>G missense_variant I844V Ile844Val
V97 BA.2.24 9.65e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4144 BA.2.24 1.00e+0 GU280_gp02 S 24424 2862A>T missense_variant Q954H Gln954His
V4146 BA.2.24 1.00e+0 GU280_gp02 S 24469 2907T>A missense_variant N969K Asn969Lys
V4596 BA.2.24 1.00e+0 GU280_gp03 ORF3a 26060 668C>T missense_variant T223I Thr223Ile
V4663 BA.2.24 9.94e-1 GU280_gp04 E 26270 26C>T missense_variant T9I Thr9Ile
V4682 BA.2.24 1.06e-2 GU280_gp04 E 26408 164C>T missense_variant S55F Ser55Phe
V4729 BA.2.24 9.97e-1 GU280_gp05 M 26577 55C>G missense_variant Q19E Gln19Glu
V4742 BA.2.24 9.99e-1 GU280_gp05 M 26709 187G>A missense_variant A63T Ala63Thr
V4839 BA.2.24 9.97e-1 GU280_gp06 ORF6 27382 181G>C missense_variant D61H Asp61His
V4841 BA.2.24 9.98e-1 GU280_gp06 ORF6 27383 182A>T missense_variant D61V Asp61Val
V773 BA.2.24 9.99e-1 GU280_gp01_pp1a ORF1ab_pp1a 2790 2525C>T missense_variant T842I Thr842Ile
V2299 BA.2.24 1.06e-2 GU280_gp01_pp1a ORF1ab_pp1a 12171 11906C>T missense_variant A3969V Ala3969Val
V5241 BA.2.24 9.99e-1 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5274 BA.2.24 9.99e-1 GU280_gp10 N 28311 38C>T missense_variant P13L Pro13Leu
V388 BA.2.24 1.15e-2 GU280_gp01_pp1a ORF1ab_pp1a 1230 965A>G missense_variant K322R Lys322Arg
V5305 BA.2.24 9.88e-1 GU280_gp10 N 28361 90_98delAGAACGCAG disruptive_inframe_deletion E31_S33del Glu31_Ser33del
V5313 BA.2.24 1.20e-2 GU280_gp10 N 28370 97A>G missense_variant S33G Ser33Gly
V5461 BA.2.24 9.98e-1 GU280_gp10 N 28881 608G>A missense_variant R203K Arg203Lys
V5465 BA.2.24 9.98e-1 GU280_gp10 N 28883 610G>C missense_variant G204R Gly204Arg
V5651 BA.2.24 9.98e-1 GU280_gp10 N 29510 1237A>C missense_variant S413R Ser413Arg
V5677 BA.2.24 2.00e-2 GU280_gp11 ORF10 29555 -3C>T upstream_gene_variant None None
V5758 BA.2.24 4.50e-2 GU280_gp02 S 29733 *4350_*4375delGAGGCCACGCGGAGTACGATCGAGTG downstream_gene_variant None None
V5811 BA.2.24 3.95e-2 GU280_gp02 S 29774 *4390C>T downstream_gene_variant None None
V890 BA.2.24 1.50e-2 GU280_gp01_pp1a ORF1ab_pp1a 3264 2999C>T missense_variant T1000I Thr1000Ile
V2021 BA.2.24 2.08e-2 GU280_gp01_pp1a ORF1ab_pp1a 10323 10058A>G missense_variant K3353R Lys3353Arg
V1017 BA.2.24 1.39e-2 GU280_gp01_pp1a ORF1ab_pp1a 3737 3472C>T missense_variant P1158S Pro1158Ser
V1062 BA.2.24 1.32e-2 GU280_gp01_pp1a ORF1ab_pp1a 3923 3658C>T missense_variant P1220S Pro1220Ser
V1114 BA.2.24 9.99e-1 GU280_gp01_pp1a ORF1ab_pp1a 4184 3919G>A missense_variant G1307S Gly1307Ser
V6 BA.2.24 2.33e-2 GU280_gp01_pp1a ORF1ab_pp1a 44 -222C>T upstream_gene_variant None None
V1186 BA.2.24 8.80e-2 GU280_gp01_pp1a ORF1ab_pp1a 4823 4558T>C missense_variant S1520P Ser1520Pro
V1214 BA.2.24 1.69e-2 GU280_gp01_pp1a ORF1ab_pp1a 4938 4673C>T missense_variant T1558I Thr1558Ile
V1219 BA.2.24 1.40e-2 GU280_gp01_pp1a ORF1ab_pp1a 4965 4700C>T missense_variant T1567I Thr1567Ile
V181 BA.2.24 2.41e-2 GU280_gp01_pp1a ORF1ab_pp1a 507 245_259delGTCATGTTATGGTTG disruptive_inframe_deletion G82_V86del Gly82_Val86del
V192 BA.2.24 1.39e-2 GU280_gp01_pp1a ORF1ab_pp1a 514 253_258delATGGTT conservative_inframe_deletion M85_V86del Met85_Val86del
V231 BA.2.24 1.46e-2 GU280_gp01_pp1a ORF1ab_pp1a 606 341T>C missense_variant I114T Ile114Thr
V1433 BA.2.24 1.36e-2 GU280_gp01_pp1a ORF1ab_pp1a 6363 6098C>T missense_variant A2033V Ala2033Val
V249 BA.2.24 9.98e-1 GU280_gp01_pp1a ORF1ab_pp1a 670 405T>G missense_variant S135R Ser135Arg
V1708 BA.2.24 2.39e-2 GU280_gp01_pp1a ORF1ab_pp1a 8031 7766A>G missense_variant K2589R Lys2589Arg
V294 BA.2.24 2.02e-2 GU280_gp01_pp1a ORF1ab_pp1a 815 550C>T missense_variant R184C Arg184Cys
V1810 BA.2.24 1.15e-2 GU280_gp01_pp1a ORF1ab_pp1a 8655 8390C>T missense_variant S2797F Ser2797Phe
V1907 BA.2.24 9.99e-1 GU280_gp01_pp1a ORF1ab_pp1a 9344 9079C>T missense_variant L3027F Leu3027Phe
V1937 BA.2.24 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 9534 9269C>T missense_variant T3090I Thr3090Ile
V1969 BA.2.24 9.98e-1 GU280_gp01_pp1a ORF1ab_pp1a 9866 9601C>T missense_variant L3201F Leu3201Phe
V1972 BA.2.24 2.03e-2 GU280_gp01_pp1a ORF1ab_pp1a 9891 9626C>T missense_variant A3209V Ala3209Val
V2037 BA.2.24 9.95e-1 GU280_gp01_pp1a ORF1ab_pp1a 10449 10184C>A missense_variant P3395H Pro3395His
V6265 BA.2.24 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6426 BA.2.24 9.98e-1 GU280_gp01_pp1a ORF1ab_pp1a 4321 4056C>T synonymous_variant A1352A Ala1352Ala
V6807 BA.2.24 3.51e-1 GU280_gp01_pp1a ORF1ab_pp1a 7168 6903T>C synonymous_variant Y2301Y Tyr2301Tyr
V7082 BA.2.24 9.99e-1 GU280_gp01_pp1a ORF1ab_pp1a 9424 9159A>G synonymous_variant V3053V Val3053Val
V7193 BA.2.24 9.89e-1 GU280_gp01_pp1a ORF1ab_pp1a 10198 9933C>T synonymous_variant D3311D Asp3311Asp
V7219 BA.2.24 9.95e-1 GU280_gp01_pp1a ORF1ab_pp1a 10447 10182G>A synonymous_variant R3394R Arg3394Arg
V7520 BA.2.24 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 12880 12615C>T synonymous_variant I4205I Ile4205Ile
V7888 BA.2.24 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 15714 15450C>T synonymous_variant L5150L Leu5150Leu
V8457 BA.2.24 9.98e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 20055 19791A>G synonymous_variant E6597E Glu6597Glu
V9076 BA.2.24 9.99e-1 GU280_gp02 S 25000 3438C>T synonymous_variant D1146D Asp1146Asp
V9171 BA.2.24 1.00e+0 GU280_gp03 ORF3a 25584 192C>T synonymous_variant T64T Thr64Thr
V9334 BA.2.24 9.99e-1 GU280_gp05 M 26858 336C>T synonymous_variant F112F Phe112Phe
V9401 BA.2.24 9.99e-1 GU280_gp06 ORF6 27259 58A>C synonymous_variant R20R Arg20Arg
V9418 BA.2.24 9.93e-1 GU280_gp06 ORF6 27384 183T>C synonymous_variant D61D Asp61Asp
V9496 BA.2.24 9.96e-1 GU280_gp08 ORF7b 27807 52C>T synonymous_variant L18L Leu18Leu
V9682 BA.2.24 9.98e-1 GU280_gp10 N 28882 609G>A synonymous_variant R203R Arg203Arg
V6630 BA.2.24 2.06e-2 GU280_gp01_pp1a ORF1ab_pp1a 5812 5547C>T synonymous_variant D1849D Asp1849Asp
V6819 BA.2.24 1.77e-2 GU280_gp01_pp1a ORF1ab_pp1a 7291 7026A>G synonymous_variant G2342G Gly2342Gly
V6860 BA.2.24 1.26e-2 GU280_gp01_pp1a ORF1ab_pp1a 7681 7416C>T synonymous_variant D2472D Asp2472Asp
V7247 BA.2.24 1.57e-2 GU280_gp01_pp1a ORF1ab_pp1a 10645 10380C>T synonymous_variant D3460D Asp3460Asp
V9479 BA.2.24 1.57e-2 GU280_gp07 ORF7a 27708 315G>A synonymous_variant A105A Ala105Ala
V9446 BA.2.24 1.72e-2 GU280_gp07 ORF7a 27549 156C>T synonymous_variant N52N Asn52Asn
V7626 BA.2.24 2.17e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 13665 13401C>T synonymous_variant H4467H His4467His
V8736 BA.2.24 4.42e-2 GU280_gp02 S 22363 801G>T synonymous_variant V267V Val267Val
V9423 BA.2.24 1.18e-2 GU280_gp07 ORF7a 27432 39T>C synonymous_variant A13A Ala13Ala
V8036 BA.2.24 4.72e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16887 16623C>T synonymous_variant Y5541Y Tyr5541Tyr
V9415 BA.2.24 1.42e-2 GU280_gp06 ORF6 27372 171A>T synonymous_variant P57P Pro57Pro
V9233 BA.2.24 1.10e-2 GU280_gp03 ORF3a 26058 666C>T synonymous_variant D222D Asp222Asp
V6094 BA.2.24 1.22e-2 GU280_gp01_pp1a ORF1ab_pp1a 1909 1644C>T synonymous_variant F548F Phe548Phe
V9624 BA.2.24 1.55e-2 GU280_gp10 N 28606 333C>T synonymous_variant Y111Y Tyr111Tyr
V7489 BA.2.24 3.15e-2 GU280_gp01_pp1a ORF1ab_pp1a 12667 12402T>C synonymous_variant N4134N Asn4134Asn
V5926 BA.2.24 1.86e-2 GU280_gp01_pp1a ORF1ab_pp1a 745 480C>T synonymous_variant N160N Asn160Asn
V8335 BA.2.24 1.29e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 19029 18765C>T synonymous_variant H6255H His6255His
V7051 BA.2.24 1.47e-2 GU280_gp01_pp1a ORF1ab_pp1a 9163 8898C>T synonymous_variant N2966N Asn2966Asn