Browsing Mutation Sites on Lineage BA.5.2.1


Overview of the global distribution of genome sequences on lineage BA.5.2.1.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage BA.5.2.1.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage BA.5.2.1.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 BA.5.2.1 9.97e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V2814 BA.5.2.1 6.02e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16726 16462C>T missense_variant H5488Y His5488Tyr
V2831 BA.5.2.1 1.52e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 16859 16595C>T missense_variant A5532V Ala5532Val
V2918 BA.5.2.1 9.94e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 17410 17146C>T missense_variant R5716C Arg5716Cys
V2965 BA.5.2.1 1.44e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 17750 17486C>T missense_variant A5829V Ala5829Val
V3015 BA.5.2.1 9.83e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18163 17899A>G missense_variant I5967V Ile5967Val
V1982 BA.5.2.1 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V3273 BA.5.2.1 9.64e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19955 19691C>T missense_variant T6564I Thr6564Ile
V3520 BA.5.2.1 1.61e-2 GU280_gp02 S 21575 13C>T missense_variant L5F Leu5Phe
V3534 BA.5.2.1 9.31e-1 GU280_gp02 S 21618 56C>T missense_variant T19I Thr19Ile
V3544 BA.5.2.1 9.00e-1 GU280_gp02 S 21632 71_79delTACCCCCTG disruptive_inframe_deletion L24_A27delinsS Leu24_Ala27delinsSer
V3547 BA.5.2.1 4.42e-2 GU280_gp02 S 21633 71T>C missense_variant L24S Leu24Ser
V3555 BA.5.2.1 2.46e-2 GU280_gp02 S 21641 79G>T missense_variant A27S Ala27Ser
V3578 BA.5.2.1 9.29e-1 GU280_gp02 S 21764 204_209delACATGT disruptive_inframe_deletion H69_V70del His69_Val70del
V3583 BA.5.2.1 8.76e-2 GU280_gp02 S 21770 208G>A missense_variant V70I Val70Ile
V3635 BA.5.2.1 9.76e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3638 BA.5.2.1 1.87e-2 GU280_gp02 S 21990 432_434delTTA disruptive_inframe_deletion Y145del Tyr145del
V3735 BA.5.2.1 9.82e-1 GU280_gp02 S 22200 638T>G missense_variant V213G Val213Gly
V2163 BA.5.2.1 9.70e-1 GU280_gp01_pp1a ORF1ab_pp1a 11287 11023_11031delTCTGGTTTT conservative_inframe_deletion S3675_F3677del Ser3675_Phe3677del
V2165 BA.5.2.1 3.39e-2 GU280_gp01_pp1a ORF1ab_pp1a 11288 11023T>A missense_variant S3675T Ser3675Thr
V2167 BA.5.2.1 8.80e-2 GU280_gp01_pp1a ORF1ab_pp1a 11291 11026G>A missense_variant G3676S Gly3676Ser
V2169 BA.5.2.1 1.78e-1 GU280_gp01_pp1a ORF1ab_pp1a 11296 11031T>G missense_variant F3677L Phe3677Leu
V3820 BA.5.2.1 9.69e-1 GU280_gp02 S 22578 1016G>A missense_variant G339D Gly339Asp
V3824 BA.5.2.1 1.04e-2 GU280_gp02 S 22599 1037G>C missense_variant R346T Arg346Thr
V3840 BA.5.2.1 9.57e-1 GU280_gp02 S 22674 1112C>T missense_variant S371F Ser371Phe
V3841 BA.5.2.1 9.61e-1 GU280_gp02 S 22679 1117T>C missense_variant S373P Ser373Pro
V3843 BA.5.2.1 9.56e-1 GU280_gp02 S 22686 1124C>T missense_variant S375F Ser375Phe
V3844 BA.5.2.1 9.56e-1 GU280_gp02 S 22688 1126A>G missense_variant T376A Thr376Ala
V3851 BA.5.2.1 9.39e-1 GU280_gp02 S 22775 1213G>A missense_variant D405N Asp405Asn
V3854 BA.5.2.1 9.12e-1 GU280_gp02 S 22786 1224A>C missense_variant R408S Arg408Ser
V3861 BA.5.2.1 9.28e-1 GU280_gp02 S 22813 1251G>T missense_variant K417N Lys417Asn
V3868 BA.5.2.1 9.02e-1 GU280_gp02 S 22882 1320T>G missense_variant N440K Asn440Lys
V3886 BA.5.2.1 9.33e-1 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3896 BA.5.2.1 9.46e-1 GU280_gp02 S 22992 1430G>A missense_variant S477N Ser477Asn
V3900 BA.5.2.1 9.47e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3911 BA.5.2.1 9.50e-1 GU280_gp02 S 23013 1451A>C missense_variant E484A Glu484Ala
V3916 BA.5.2.1 9.50e-1 GU280_gp02 S 23018 1456T>G missense_variant F486V Phe486Val
V3926 BA.5.2.1 9.52e-1 GU280_gp02 S 23055 1493A>G missense_variant Q498R Gln498Arg
V3927 BA.5.2.1 9.53e-1 GU280_gp02 S 23063 1501A>T missense_variant N501Y Asn501Tyr
V3930 BA.5.2.1 9.53e-1 GU280_gp02 S 23075 1513T>C missense_variant Y505H Tyr505His
V3969 BA.5.2.1 9.98e-1 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V3997 BA.5.2.1 9.95e-1 GU280_gp02 S 23525 1963C>T missense_variant H655Y His655Tyr
V4019 BA.5.2.1 9.88e-1 GU280_gp02 S 23599 2037T>G missense_variant N679K Asn679Lys
V4022 BA.5.2.1 9.85e-1 GU280_gp02 S 23604 2042C>A missense_variant P681H Pro681His
V4063 BA.5.2.1 9.81e-1 GU280_gp02 S 23854 2292C>A missense_variant N764K Asn764Lys
V4079 BA.5.2.1 9.87e-1 GU280_gp02 S 23948 2386G>T missense_variant D796Y Asp796Tyr
V97 BA.5.2.1 8.66e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4144 BA.5.2.1 9.94e-1 GU280_gp02 S 24424 2862A>T missense_variant Q954H Gln954His
V4146 BA.5.2.1 9.95e-1 GU280_gp02 S 24469 2907T>A missense_variant N969K Asn969Lys
V4596 BA.5.2.1 9.95e-1 GU280_gp03 ORF3a 26060 668C>T missense_variant T223I Thr223Ile
V4638 BA.5.2.1 1.54e-2 GU280_gp03 ORF3a 26172 780G>A missense_variant M260I Met260Ile
V4663 BA.5.2.1 9.90e-1 GU280_gp04 E 26270 26C>T missense_variant T9I Thr9Ile
V4718 BA.5.2.1 9.30e-1 GU280_gp05 M 26529 7G>A missense_variant D3N Asp3Asn
V4729 BA.5.2.1 9.60e-1 GU280_gp05 M 26577 55C>G missense_variant Q19E Gln19Glu
V4742 BA.5.2.1 9.85e-1 GU280_gp05 M 26709 187G>A missense_variant A63T Ala63Thr
V4837 BA.5.2.1 3.74e-2 GU280_gp06 ORF6 27371 170C>T missense_variant P57L Pro57Leu
V5060 BA.5.2.1 9.38e-1 GU280_gp09 ORF8 27889 -5C>T upstream_gene_variant None None
V773 BA.5.2.1 9.91e-1 GU280_gp01_pp1a ORF1ab_pp1a 2790 2525C>T missense_variant T842I Thr842Ile
V5241 BA.5.2.1 9.68e-1 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5274 BA.5.2.1 9.60e-1 GU280_gp10 N 28311 38C>T missense_variant P13L Pro13Leu
V5302 BA.5.2.1 1.83e-2 GU280_gp10 N 28360 88_98delGGAGAACGCAG frameshift_variant G30fs Gly30fs
V5303 BA.5.2.1 3.21e-1 GU280_gp10 N 28360 88_96delGGAGAACGC conservative_inframe_deletion G30_R32del Gly30_Arg32del
V5305 BA.5.2.1 5.68e-1 GU280_gp10 N 28361 90_98delAGAACGCAG disruptive_inframe_deletion E31_S33del Glu31_Ser33del
V5313 BA.5.2.1 3.55e-2 GU280_gp10 N 28370 97A>G missense_variant S33G Ser33Gly
V5314 BA.5.2.1 3.15e-1 GU280_gp10 N 28370 97A>T missense_variant S33C Ser33Cys
V5316 BA.5.2.1 3.20e-1 GU280_gp10 N 28371 98G>T missense_variant S33I Ser33Ile
V5461 BA.5.2.1 9.84e-1 GU280_gp10 N 28881 608G>A missense_variant R203K Arg203Lys
V5465 BA.5.2.1 9.84e-1 GU280_gp10 N 28883 610G>C missense_variant G204R Gly204Arg
V5651 BA.5.2.1 9.66e-1 GU280_gp10 N 29510 1237A>C missense_variant S413R Ser413Arg
V5758 BA.5.2.1 1.17e-1 GU280_gp02 S 29733 *4350_*4375delGAGGCCACGCGGAGTACGATCGAGTG downstream_gene_variant None None
V5762 BA.5.2.1 2.04e-2 GU280_gp02 S 29734 *4350G>T downstream_gene_variant None None
V5834 BA.5.2.1 1.29e-2 GU280_gp02 S 29868 *4484G>A downstream_gene_variant None None
V1114 BA.5.2.1 9.87e-1 GU280_gp01_pp1a ORF1ab_pp1a 4184 3919G>A missense_variant G1307S Gly1307Ser
V6 BA.5.2.1 4.32e-2 GU280_gp01_pp1a ORF1ab_pp1a 44 -222C>T upstream_gene_variant None None
V1348 BA.5.2.1 1.05e-2 GU280_gp01_pp1a ORF1ab_pp1a 5826 5561C>T missense_variant T1854I Thr1854Ile
V249 BA.5.2.1 9.91e-1 GU280_gp01_pp1a ORF1ab_pp1a 670 405T>G missense_variant S135R Ser135Arg
V260 BA.5.2.1 2.94e-2 GU280_gp01_pp1a ORF1ab_pp1a 685 421_429delAAGTCATTT conservative_inframe_deletion K141_F143del Lys141_Phe143del
V1907 BA.5.2.1 9.85e-1 GU280_gp01_pp1a ORF1ab_pp1a 9344 9079C>T missense_variant L3027F Leu3027Phe
V1937 BA.5.2.1 9.81e-1 GU280_gp01_pp1a ORF1ab_pp1a 9534 9269C>T missense_variant T3090I Thr3090Ile
V2037 BA.5.2.1 9.83e-1 GU280_gp01_pp1a ORF1ab_pp1a 10449 10184C>A missense_variant P3395H Pro3395His
V6057 BA.5.2.1 9.61e-1 GU280_gp01_pp1a ORF1ab_pp1a 1627 1362C>T synonymous_variant L454L Leu454Leu
V6265 BA.5.2.1 9.96e-1 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6426 BA.5.2.1 9.55e-1 GU280_gp01_pp1a ORF1ab_pp1a 4321 4056C>T synonymous_variant A1352A Ala1352Ala
V6778 BA.5.2.1 3.57e-1 GU280_gp01_pp1a ORF1ab_pp1a 6979 6714T>G synonymous_variant V2238V Val2238Val
V7193 BA.5.2.1 9.66e-1 GU280_gp01_pp1a ORF1ab_pp1a 10198 9933C>T synonymous_variant D3311D Asp3311Asp
V7219 BA.5.2.1 9.83e-1 GU280_gp01_pp1a ORF1ab_pp1a 10447 10182G>A synonymous_variant R3394R Arg3394Arg
V7437 BA.5.2.1 9.95e-1 GU280_gp01_pp1a ORF1ab_pp1a 12160 11895G>A synonymous_variant E3965E Glu3965Glu
V7520 BA.5.2.1 9.93e-1 GU280_gp01_pp1a ORF1ab_pp1a 12880 12615C>T synonymous_variant I4205I Ile4205Ile
V7888 BA.5.2.1 9.95e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15714 15450C>T synonymous_variant L5150L Leu5150Leu
V9076 BA.5.2.1 9.79e-1 GU280_gp02 S 25000 3438C>T synonymous_variant D1146D Asp1146Asp
V9171 BA.5.2.1 9.93e-1 GU280_gp03 ORF3a 25584 192C>T synonymous_variant T64T Thr64Thr
V9374 BA.5.2.1 9.28e-1 GU280_gp05 M 27038 516A>G synonymous_variant T172T Thr172Thr
V9496 BA.5.2.1 9.66e-1 GU280_gp08 ORF7b 27807 52C>T synonymous_variant L18L Leu18Leu
V9569 BA.5.2.1 9.47e-1 GU280_gp10 N 28330 57A>G synonymous_variant G19G Gly19Gly
V9682 BA.5.2.1 9.84e-1 GU280_gp10 N 28882 609G>A synonymous_variant R203R Arg203Arg
V6370 BA.5.2.1 2.02e-1 GU280_gp01_pp1a ORF1ab_pp1a 3859 3594A>G synonymous_variant Q1198Q Gln1198Gln
V7082 BA.5.2.1 9.73e-1 GU280_gp01_pp1a ORF1ab_pp1a 9424 9159A>G synonymous_variant V3053V Val3053Val
V8457 BA.5.2.1 9.60e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 20055 19791A>G synonymous_variant E6597E Glu6597Glu
V6562 BA.5.2.1 2.53e-1 GU280_gp01_pp1a ORF1ab_pp1a 5284 5019C>T synonymous_variant N1673N Asn1673Asn
V6918 BA.5.2.1 2.05e-2 GU280_gp01_pp1a ORF1ab_pp1a 8134 7869T>C synonymous_variant N2623N Asn2623Asn
V9301 BA.5.2.1 3.76e-2 GU280_gp05 M 26625 103C>T synonymous_variant L35L Leu35Leu
V6369 BA.5.2.1 4.55e-2 GU280_gp01_pp1a ORF1ab_pp1a 3838 3573G>A synonymous_variant L1191L Leu1191Leu
V8563 BA.5.2.1 1.09e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 21054 20790C>T synonymous_variant Y6930Y Tyr6930Tyr
V8650 BA.5.2.1 2.91e-2 GU280_gp02 S 21766 204A>C synonymous_variant I68I Ile68Ile
V7061 BA.5.2.1 1.48e-2 GU280_gp01_pp1a ORF1ab_pp1a 9220 8955G>A synonymous_variant R2985R Arg2985Arg
V9631 BA.5.2.1 1.67e-2 GU280_gp10 N 28651 378C>T synonymous_variant N126N Asn126Asn
V5939 BA.5.2.1 1.20e-2 GU280_gp01_pp1a ORF1ab_pp1a 829 564C>T synonymous_variant N188N Asn188Asn
V8801 BA.5.2.1 1.04e-2 GU280_gp02 S 22879 1317C>T synonymous_variant N439N Asn439Asn
V9576 BA.5.2.1 3.03e-2 GU280_gp10 N 28363 90A>T synonymous_variant G30G Gly30Gly
V8279 BA.5.2.1 2.69e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18657 18393C>T synonymous_variant T6131T Thr6131Thr
V8845 BA.5.2.1 2.23e-2 GU280_gp02 S 23269 1707T>C synonymous_variant I569I Ile569Ile
V7848 BA.5.2.1 1.85e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 15396 15132C>T synonymous_variant F5044F Phe5044Phe