Browsing Mutation Sites on Lineage DH.1


Overview of the global distribution of genome sequences on lineage DH.1.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage DH.1.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage DH.1.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V2900 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 17285 17021C>T missense_variant S5674L Ser5674Leu
V2918 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 17410 17146C>T missense_variant R5716C Arg5716Cys
V3015 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 18163 17899A>G missense_variant I5967V Ile5967Val
V1982 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V3273 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 19955 19691C>T missense_variant T6564I Thr6564Ile
V3484 DH.1 2.80e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 21304 21040C>A missense_variant R7014S Arg7014Ser
V3486 DH.1 2.80e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 21305 21041G>A missense_variant R7014H Arg7014His
V3534 DH.1 9.81e-1 GU280_gp02 S 21618 56C>T missense_variant T19I Thr19Ile
V3544 DH.1 9.81e-1 GU280_gp02 S 21632 71_79delTACCCCCTG disruptive_inframe_deletion L24_A27delinsS Leu24_Ala27delinsSer
V3578 DH.1 9.72e-1 GU280_gp02 S 21764 204_209delACATGT disruptive_inframe_deletion H69_V70del His69_Val70del
V3583 DH.1 7.48e-2 GU280_gp02 S 21770 208G>A missense_variant V70I Val70Ile
V3635 DH.1 1.00e+0 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3641 DH.1 1.00e+0 GU280_gp02 S 21992 432_437delTTACCA disruptive_inframe_deletion Y145_H146del Tyr145_His146del
V3649 DH.1 2.80e-2 GU280_gp02 S 21998 436C>T missense_variant H146Y His146Tyr
V3735 DH.1 1.00e+0 GU280_gp02 S 22200 638T>G missense_variant V213G Val213Gly
V2163 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 11287 11023_11031delTCTGGTTTT conservative_inframe_deletion S3675_F3677del Ser3675_Phe3677del
V2165 DH.1 2.80e-2 GU280_gp01_pp1a ORF1ab_pp1a 11288 11023T>A missense_variant S3675T Ser3675Thr
V2167 DH.1 8.41e-2 GU280_gp01_pp1a ORF1ab_pp1a 11291 11026G>A missense_variant G3676S Gly3676Ser
V2169 DH.1 3.36e-1 GU280_gp01_pp1a ORF1ab_pp1a 11296 11031T>G missense_variant F3677L Phe3677Leu
V3820 DH.1 1.00e+0 GU280_gp02 S 22578 1016G>A missense_variant G339D Gly339Asp
V3840 DH.1 9.91e-1 GU280_gp02 S 22674 1112C>T missense_variant S371F Ser371Phe
V3841 DH.1 9.91e-1 GU280_gp02 S 22679 1117T>C missense_variant S373P Ser373Pro
V3843 DH.1 9.91e-1 GU280_gp02 S 22686 1124C>T missense_variant S375F Ser375Phe
V3844 DH.1 9.91e-1 GU280_gp02 S 22688 1126A>G missense_variant T376A Thr376Ala
V3851 DH.1 9.91e-1 GU280_gp02 S 22775 1213G>A missense_variant D405N Asp405Asn
V3854 DH.1 9.91e-1 GU280_gp02 S 22786 1224A>C missense_variant R408S Arg408Ser
V3861 DH.1 9.91e-1 GU280_gp02 S 22813 1251G>T missense_variant K417N Lys417Asn
V3868 DH.1 9.91e-1 GU280_gp02 S 22882 1320T>G missense_variant N440K Asn440Lys
V3886 DH.1 9.91e-1 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3896 DH.1 9.91e-1 GU280_gp02 S 22992 1430G>A missense_variant S477N Ser477Asn
V3900 DH.1 9.91e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3911 DH.1 9.91e-1 GU280_gp02 S 23013 1451A>C missense_variant E484A Glu484Ala
V3916 DH.1 9.91e-1 GU280_gp02 S 23018 1456T>G missense_variant F486V Phe486Val
V3926 DH.1 9.91e-1 GU280_gp02 S 23055 1493A>G missense_variant Q498R Gln498Arg
V3927 DH.1 9.91e-1 GU280_gp02 S 23063 1501A>T missense_variant N501Y Asn501Tyr
V677 DH.1 1.78e-1 GU280_gp01_pp1a ORF1ab_pp1a 2306 2041C>T missense_variant L681F Leu681Phe
V3930 DH.1 9.91e-1 GU280_gp02 S 23075 1513T>C missense_variant Y505H Tyr505His
V3969 DH.1 1.00e+0 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V3997 DH.1 1.00e+0 GU280_gp02 S 23525 1963C>T missense_variant H655Y His655Tyr
V4019 DH.1 1.00e+0 GU280_gp02 S 23599 2037T>G missense_variant N679K Asn679Lys
V4022 DH.1 1.00e+0 GU280_gp02 S 23604 2042C>A missense_variant P681H Pro681His
V4063 DH.1 1.00e+0 GU280_gp02 S 23854 2292C>A missense_variant N764K Asn764Lys
V4079 DH.1 1.00e+0 GU280_gp02 S 23948 2386G>T missense_variant D796Y Asp796Tyr
V97 DH.1 9.07e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4144 DH.1 1.00e+0 GU280_gp02 S 24424 2862A>T missense_variant Q954H Gln954His
V4146 DH.1 1.00e+0 GU280_gp02 S 24469 2907T>A missense_variant N969K Asn969Lys
V4596 DH.1 1.00e+0 GU280_gp03 ORF3a 26060 668C>T missense_variant T223I Thr223Ile
V4663 DH.1 1.00e+0 GU280_gp04 E 26270 26C>T missense_variant T9I Thr9Ile
V4718 DH.1 3.93e-1 GU280_gp05 M 26529 7G>A missense_variant D3N Asp3Asn
V4729 DH.1 8.32e-1 GU280_gp05 M 26577 55C>G missense_variant Q19E Gln19Glu
V4742 DH.1 1.00e+0 GU280_gp05 M 26709 187G>A missense_variant A63T Ala63Thr
V5060 DH.1 9.91e-1 GU280_gp09 ORF8 27889 -5C>T upstream_gene_variant None None
V773 DH.1 9.91e-1 GU280_gp01_pp1a ORF1ab_pp1a 2790 2525C>T missense_variant T842I Thr842Ile
V5241 DH.1 1.00e+0 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5274 DH.1 1.00e+0 GU280_gp10 N 28311 38C>T missense_variant P13L Pro13Leu
V5305 DH.1 1.00e+0 GU280_gp10 N 28361 90_98delAGAACGCAG disruptive_inframe_deletion E31_S33del Glu31_Ser33del
V5313 DH.1 2.80e-2 GU280_gp10 N 28370 97A>G missense_variant S33G Ser33Gly
V5461 DH.1 1.00e+0 GU280_gp10 N 28881 608G>A missense_variant R203K Arg203Lys
V5465 DH.1 1.00e+0 GU280_gp10 N 28883 610G>C missense_variant G204R Gly204Arg
V5651 DH.1 9.44e-1 GU280_gp10 N 29510 1237A>C missense_variant S413R Ser413Arg
V5717 DH.1 4.86e-1 GU280_gp11 ORF10 29666 109C>T missense_variant L37F Leu37Phe
V1114 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 4184 3919G>A missense_variant G1307S Gly1307Ser
V197 DH.1 2.80e-2 GU280_gp01_pp1a ORF1ab_pp1a 518 254_259delTGGTTG disruptive_inframe_deletion M85_E87delinsK Met85_Glu87delinsLys
V1491 DH.1 8.04e-1 GU280_gp01_pp1a ORF1ab_pp1a 6543 6278C>T missense_variant T2093I Thr2093Ile
V249 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 670 405T>G missense_variant S135R Ser135Arg
V1779 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 8456 8191A>G missense_variant S2731G Ser2731Gly
V1907 DH.1 9.63e-1 GU280_gp01_pp1a ORF1ab_pp1a 9344 9079C>T missense_variant L3027F Leu3027Phe
V1937 DH.1 9.91e-1 GU280_gp01_pp1a ORF1ab_pp1a 9534 9269C>T missense_variant T3090I Thr3090Ile
V2037 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 10449 10184C>A missense_variant P3395H Pro3395His
V6265 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6426 DH.1 9.81e-1 GU280_gp01_pp1a ORF1ab_pp1a 4321 4056C>T synonymous_variant A1352A Ala1352Ala
V7082 DH.1 9.72e-1 GU280_gp01_pp1a ORF1ab_pp1a 9424 9159A>G synonymous_variant V3053V Val3053Val
V7193 DH.1 9.91e-1 GU280_gp01_pp1a ORF1ab_pp1a 10198 9933C>T synonymous_variant D3311D Asp3311Asp
V7219 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 10447 10182G>A synonymous_variant R3394R Arg3394Arg
V7437 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 12160 11895G>A synonymous_variant E3965E Glu3965Glu
V7520 DH.1 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 12880 12615C>T synonymous_variant I4205I Ile4205Ile
V7888 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 15714 15450C>T synonymous_variant L5150L Leu5150Leu
V8457 DH.1 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 20055 19791A>G synonymous_variant E6597E Glu6597Glu
V9171 DH.1 1.00e+0 GU280_gp03 ORF3a 25584 192C>T synonymous_variant T64T Thr64Thr
V9424 DH.1 9.81e-1 GU280_gp07 ORF7a 27438 45T>C synonymous_variant C15C Cys15Cys
V9496 DH.1 9.72e-1 GU280_gp08 ORF7b 27807 52C>T synonymous_variant L18L Leu18Leu
V9682 DH.1 1.00e+0 GU280_gp10 N 28882 609G>A synonymous_variant R203R Arg203Arg
V9076 DH.1 9.35e-1 GU280_gp02 S 25000 3438C>T synonymous_variant D1146D Asp1146Asp
V8650 DH.1 1.96e-1 GU280_gp02 S 21766 204A>C synonymous_variant I68I Ile68Ile
V9576 DH.1 2.06e-1 GU280_gp10 N 28363 90A>T synonymous_variant G30G Gly30Gly
V7644 DH.1 2.80e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 13860 13596C>T synonymous_variant D4532D Asp4532Asp
V9338 DH.1 1.87e-2 GU280_gp05 M 26873 351C>T synonymous_variant N117N Asn117Asn
V8690 DH.1 2.80e-2 GU280_gp02 S 21994 432T>C synonymous_variant Y144Y Tyr144Tyr