Browsing Mutation Sites on Lineage BF.3


Overview of the global distribution of genome sequences on lineage BF.3.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage BF.3.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage BF.3.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 BF.3 9.98e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V460 BF.3 3.64e-2 GU280_gp01_pp1a ORF1ab_pp1a 1514 1249C>T missense_variant H417Y His417Tyr
V2694 BF.3 2.36e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 15451 15187G>A missense_variant G5063S Gly5063Ser
V2918 BF.3 9.92e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 17410 17146C>T missense_variant R5716C Arg5716Cys
V3015 BF.3 9.77e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18163 17899A>G missense_variant I5967V Ile5967Val
V3022 BF.3 4.13e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 18175 17911C>T missense_variant P5971S Pro5971Ser
V1982 BF.3 9.94e-1 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V3273 BF.3 9.74e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19955 19691C>T missense_variant T6564I Thr6564Ile
V66 BF.3 6.43e-2 GU280_gp01_pp1a ORF1ab_pp1a 203 -63C>T upstream_gene_variant None None
V2129 BF.3 3.48e-2 GU280_gp01_pp1a ORF1ab_pp1a 11139 10874C>T missense_variant A3625V Ala3625Val
V3534 BF.3 8.32e-1 GU280_gp02 S 21618 56C>T missense_variant T19I Thr19Ile
V3544 BF.3 8.32e-1 GU280_gp02 S 21632 71_79delTACCCCCTG disruptive_inframe_deletion L24_A27delinsS Leu24_Ala27delinsSer
V3547 BF.3 4.39e-2 GU280_gp02 S 21633 71T>C missense_variant L24S Leu24Ser
V3555 BF.3 2.04e-2 GU280_gp02 S 21641 79G>T missense_variant A27S Ala27Ser
V3578 BF.3 8.93e-1 GU280_gp02 S 21764 204_209delACATGT disruptive_inframe_deletion H69_V70del His69_Val70del
V3583 BF.3 1.06e-1 GU280_gp02 S 21770 208G>A missense_variant V70I Val70Ile
V3635 BF.3 9.78e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3638 BF.3 3.05e-2 GU280_gp02 S 21990 432_434delTTA disruptive_inframe_deletion Y145del Tyr145del
V3691 BF.3 6.54e-2 GU280_gp02 S 22101 539A>T missense_variant E180V Glu180Val
V3735 BF.3 9.80e-1 GU280_gp02 S 22200 638T>G missense_variant V213G Val213Gly
V2163 BF.3 9.31e-1 GU280_gp01_pp1a ORF1ab_pp1a 11287 11023_11031delTCTGGTTTT conservative_inframe_deletion S3675_F3677del Ser3675_Phe3677del
V2165 BF.3 4.50e-2 GU280_gp01_pp1a ORF1ab_pp1a 11288 11023T>A missense_variant S3675T Ser3675Thr
V2167 BF.3 7.93e-2 GU280_gp01_pp1a ORF1ab_pp1a 11291 11026G>A missense_variant G3676S Gly3676Ser
V2169 BF.3 2.36e-1 GU280_gp01_pp1a ORF1ab_pp1a 11296 11031T>G missense_variant F3677L Phe3677Leu
V3820 BF.3 9.38e-1 GU280_gp02 S 22578 1016G>A missense_variant G339D Gly339Asp
V3840 BF.3 9.24e-1 GU280_gp02 S 22674 1112C>T missense_variant S371F Ser371Phe
V3841 BF.3 9.27e-1 GU280_gp02 S 22679 1117T>C missense_variant S373P Ser373Pro
V3843 BF.3 9.24e-1 GU280_gp02 S 22686 1124C>T missense_variant S375F Ser375Phe
V3844 BF.3 9.23e-1 GU280_gp02 S 22688 1126A>G missense_variant T376A Thr376Ala
V3851 BF.3 8.55e-1 GU280_gp02 S 22775 1213G>A missense_variant D405N Asp405Asn
V3854 BF.3 8.04e-1 GU280_gp02 S 22786 1224A>C missense_variant R408S Arg408Ser
V3861 BF.3 8.31e-1 GU280_gp02 S 22813 1251G>T missense_variant K417N Lys417Asn
V3868 BF.3 8.05e-1 GU280_gp02 S 22882 1320T>G missense_variant N440K Asn440Lys
V3877 BF.3 2.14e-2 GU280_gp02 S 22898 1336G>A missense_variant G446S Gly446Ser
V3886 BF.3 8.26e-1 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3896 BF.3 8.48e-1 GU280_gp02 S 22992 1430G>A missense_variant S477N Ser477Asn
V3900 BF.3 8.49e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3911 BF.3 8.69e-1 GU280_gp02 S 23013 1451A>C missense_variant E484A Glu484Ala
V3916 BF.3 8.71e-1 GU280_gp02 S 23018 1456T>G missense_variant F486V Phe486Val
V3926 BF.3 8.97e-1 GU280_gp02 S 23055 1493A>G missense_variant Q498R Gln498Arg
V3927 BF.3 9.04e-1 GU280_gp02 S 23063 1501A>T missense_variant N501Y Asn501Tyr
V3930 BF.3 8.99e-1 GU280_gp02 S 23075 1513T>C missense_variant Y505H Tyr505His
V3940 BF.3 9.78e-1 GU280_gp02 S 23202 1640C>T missense_variant T547I Thr547Ile
V3949 BF.3 1.55e-2 GU280_gp02 S 23270 1708G>T missense_variant A570S Ala570Ser
V3969 BF.3 9.94e-1 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V3997 BF.3 9.90e-1 GU280_gp02 S 23525 1963C>T missense_variant H655Y His655Tyr
V4019 BF.3 9.68e-1 GU280_gp02 S 23599 2037T>G missense_variant N679K Asn679Lys
V4022 BF.3 9.69e-1 GU280_gp02 S 23604 2042C>A missense_variant P681H Pro681His
V4063 BF.3 9.71e-1 GU280_gp02 S 23854 2292C>A missense_variant N764K Asn764Lys
V4079 BF.3 9.69e-1 GU280_gp02 S 23948 2386G>T missense_variant D796Y Asp796Tyr
V97 BF.3 8.60e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4144 BF.3 9.90e-1 GU280_gp02 S 24424 2862A>T missense_variant Q954H Gln954His
V4146 BF.3 9.90e-1 GU280_gp02 S 24469 2907T>A missense_variant N969K Asn969Lys
V4154 BF.3 9.87e-1 GU280_gp02 S 24620 3058G>T missense_variant A1020S Ala1020Ser
V4279 BF.3 2.20e-2 GU280_gp02 S 25311 3749G>T missense_variant C1250F Cys1250Phe
V4435 BF.3 1.61e-2 GU280_gp03 ORF3a 25618 226G>A missense_variant G76S Gly76Ser
V4513 BF.3 2.04e-2 GU280_gp03 ORF3a 25810 418C>T missense_variant L140F Leu140Phe
V4535 BF.3 1.71e-2 GU280_gp03 ORF3a 25904 512C>T missense_variant S171L Ser171Leu
V4596 BF.3 9.98e-1 GU280_gp03 ORF3a 26060 668C>T missense_variant T223I Thr223Ile
V4663 BF.3 9.96e-1 GU280_gp04 E 26270 26C>T missense_variant T9I Thr9Ile
V4718 BF.3 9.37e-1 GU280_gp05 M 26529 7G>A missense_variant D3N Asp3Asn
V4729 BF.3 9.25e-1 GU280_gp05 M 26577 55C>G missense_variant Q19E Gln19Glu
V4742 BF.3 9.81e-1 GU280_gp05 M 26709 187G>A missense_variant A63T Ala63Thr
V4844 BF.3 9.59e-2 GU280_gp07 ORF7a 27390 -4G>T upstream_gene_variant None None
V4846 BF.3 1.02e-2 GU280_gp07 ORF7a 27393 -1C>T upstream_gene_variant None None
V4966 BF.3 2.20e-2 GU280_gp07 ORF7a 27673 280C>A missense_variant Q94K Gln94Lys
V5060 BF.3 9.13e-1 GU280_gp09 ORF8 27889 -5C>T upstream_gene_variant None None
V773 BF.3 9.97e-1 GU280_gp01_pp1a ORF1ab_pp1a 2790 2525C>T missense_variant T842I Thr842Ile
V5241 BF.3 9.67e-1 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5274 BF.3 9.57e-1 GU280_gp10 N 28311 38C>T missense_variant P13L Pro13Leu
V5305 BF.3 8.79e-1 GU280_gp10 N 28361 90_98delAGAACGCAG disruptive_inframe_deletion E31_S33del Glu31_Ser33del
V5308 BF.3 1.55e-2 GU280_gp10 N 28362 90_97delAGAACGCA frameshift_variant E31fs Glu31fs
V5313 BF.3 5.09e-2 GU280_gp10 N 28370 97A>G missense_variant S33G Ser33Gly
V5461 BF.3 9.89e-1 GU280_gp10 N 28881 608G>A missense_variant R203K Arg203Lys
V5465 BF.3 9.89e-1 GU280_gp10 N 28883 610G>C missense_variant G204R Gly204Arg
V5651 BF.3 9.60e-1 GU280_gp10 N 29510 1237A>C missense_variant S413R Ser413Arg
V5758 BF.3 1.24e-1 GU280_gp02 S 29733 *4350_*4375delGAGGCCACGCGGAGTACGATCGAGTG downstream_gene_variant None None
V5762 BF.3 1.98e-2 GU280_gp02 S 29734 *4350G>T downstream_gene_variant None None
V5834 BF.3 2.41e-2 GU280_gp02 S 29868 *4484G>A downstream_gene_variant None None
V842 BF.3 3.22e-2 GU280_gp01_pp1a ORF1ab_pp1a 3096 2831C>T missense_variant S944L Ser944Leu
V2371 BF.3 1.39e-2 GU280_gp01_pp1a ORF1ab_pp1a 12756 12491C>T missense_variant T4164I Thr4164Ile
V986 BF.3 1.88e-2 GU280_gp01_pp1a ORF1ab_pp1a 3618 3353T>C missense_variant V1118A Val1118Ala
V1037 BF.3 1.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 3838 3573G>T missense_variant L1191F Leu1191Phe
V1044 BF.3 1.82e-2 GU280_gp01_pp1a ORF1ab_pp1a 3871 3606G>T missense_variant K1202N Lys1202Asn
V1114 BF.3 9.91e-1 GU280_gp01_pp1a ORF1ab_pp1a 4184 3919G>A missense_variant G1307S Gly1307Ser
V6 BF.3 3.43e-2 GU280_gp01_pp1a ORF1ab_pp1a 44 -222C>T upstream_gene_variant None None
V1352 BF.3 3.59e-2 GU280_gp01_pp1a ORF1ab_pp1a 5849 5584C>T missense_variant P1862S Pro1862Ser
V249 BF.3 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 670 405T>G missense_variant S135R Ser135Arg
V260 BF.3 1.13e-2 GU280_gp01_pp1a ORF1ab_pp1a 685 421_429delAAGTCATTT conservative_inframe_deletion K141_F143del Lys141_Phe143del
V1700 BF.3 1.66e-2 GU280_gp01_pp1a ORF1ab_pp1a 7995 7730T>G missense_variant V2577G Val2577Gly
V1907 BF.3 9.89e-1 GU280_gp01_pp1a ORF1ab_pp1a 9344 9079C>T missense_variant L3027F Leu3027Phe
V1937 BF.3 9.88e-1 GU280_gp01_pp1a ORF1ab_pp1a 9534 9269C>T missense_variant T3090I Thr3090Ile
V2037 BF.3 9.77e-1 GU280_gp01_pp1a ORF1ab_pp1a 10449 10184C>A missense_variant P3395H Pro3395His
V6057 BF.3 9.57e-1 GU280_gp01_pp1a ORF1ab_pp1a 1627 1362C>T synonymous_variant L454L Leu454Leu
V6265 BF.3 9.98e-1 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6426 BF.3 9.55e-1 GU280_gp01_pp1a ORF1ab_pp1a 4321 4056C>T synonymous_variant A1352A Ala1352Ala
V6778 BF.3 9.77e-1 GU280_gp01_pp1a ORF1ab_pp1a 6979 6714T>G synonymous_variant V2238V Val2238Val
V7082 BF.3 9.79e-1 GU280_gp01_pp1a ORF1ab_pp1a 9424 9159A>G synonymous_variant V3053V Val3053Val
V7193 BF.3 9.52e-1 GU280_gp01_pp1a ORF1ab_pp1a 10198 9933C>T synonymous_variant D3311D Asp3311Asp
V7219 BF.3 9.77e-1 GU280_gp01_pp1a ORF1ab_pp1a 10447 10182G>A synonymous_variant R3394R Arg3394Arg
V7437 BF.3 9.98e-1 GU280_gp01_pp1a ORF1ab_pp1a 12160 11895G>A synonymous_variant E3965E Glu3965Glu
V7472 BF.3 1.79e-1 GU280_gp01_pp1a ORF1ab_pp1a 12439 12174C>T synonymous_variant P4058P Pro4058Pro
V7520 BF.3 9.96e-1 GU280_gp01_pp1a ORF1ab_pp1a 12880 12615C>T synonymous_variant I4205I Ile4205Ile
V7888 BF.3 9.95e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15714 15450C>T synonymous_variant L5150L Leu5150Leu
V8457 BF.3 9.71e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 20055 19791A>G synonymous_variant E6597E Glu6597Glu
V9076 BF.3 9.75e-1 GU280_gp02 S 25000 3438C>T synonymous_variant D1146D Asp1146Asp
V9171 BF.3 9.94e-1 GU280_gp03 ORF3a 25584 192C>T synonymous_variant T64T Thr64Thr
V9252 BF.3 4.45e-2 GU280_gp03 ORF3a 26187 795T>C synonymous_variant D265D Asp265Asp
V9355 BF.3 1.75e-1 GU280_gp05 M 26942 420C>T synonymous_variant I140I Ile140Ile
V9374 BF.3 7.95e-1 GU280_gp05 M 27038 516A>G synonymous_variant T172T Thr172Thr
V9446 BF.3 6.39e-1 GU280_gp07 ORF7a 27549 156C>T synonymous_variant N52N Asn52Asn
V9496 BF.3 9.45e-1 GU280_gp08 ORF7b 27807 52C>T synonymous_variant L18L Leu18Leu
V9569 BF.3 9.50e-1 GU280_gp10 N 28330 57A>G synonymous_variant G19G Gly19Gly
V9682 BF.3 9.89e-1 GU280_gp10 N 28882 609G>A synonymous_variant R203R Arg203Arg
V8591 BF.3 1.32e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 21255 20991G>C synonymous_variant A6997A Ala6997Ala
V6892 BF.3 1.71e-2 GU280_gp01_pp1a ORF1ab_pp1a 7948 7683C>T synonymous_variant Y2561Y Tyr2561Tyr
V5871 BF.3 8.95e-2 GU280_gp01_pp1a ORF1ab_pp1a 478 213C>T synonymous_variant I71I Ile71Ile
V7476 BF.3 1.07e-2 GU280_gp01_pp1a ORF1ab_pp1a 12473 12208C>T synonymous_variant L4070L Leu4070Leu
V8650 BF.3 2.84e-2 GU280_gp02 S 21766 204A>C synonymous_variant I68I Ile68Ile
V9648 BF.3 1.07e-2 GU280_gp10 N 28720 447C>T synonymous_variant R149R Arg149Arg
V9576 BF.3 4.93e-2 GU280_gp10 N 28363 90A>T synonymous_variant G30G Gly30Gly
V7853 BF.3 1.02e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 15427 15163T>C synonymous_variant L5055L Leu5055Leu
V7403 BF.3 3.00e-2 GU280_gp01_pp1a ORF1ab_pp1a 11962 11697C>T synonymous_variant L3899L Leu3899Leu
V8753 BF.3 2.95e-2 GU280_gp02 S 22498 936C>T synonymous_variant I312I Ile312Ile
V9597 BF.3 1.98e-2 GU280_gp10 N 28426 153T>C synonymous_variant S51S Ser51Ser
V7550 BF.3 2.36e-2 GU280_gp01_pp1a ORF1ab_pp1a 13115 12850C>T synonymous_variant L4284L Leu4284Leu
V6610 BF.3 1.13e-2 GU280_gp01_pp1a ORF1ab_pp1a 5629 5364G>T synonymous_variant T1788T Thr1788Thr
V8808 BF.3 2.25e-2 GU280_gp02 S 22978 1416C>T synonymous_variant I472I Ile472Ile