Browsing Mutation Sites on Lineage BM.4


Overview of the global distribution of genome sequences on lineage BM.4.
Note: Color representation of genome sequence counts.



The temporal dynamics of genome sequence count within lineage BM.4.
Note: Clicking the "Count" or "Cumulative Count" button toggles the view. Count represents the number of genome sequences per month. Cumulative count represents the accumulated total count up to that month.




Mutation table of lineage BM.4.
Note: Click on the mutation ID in the table to retrieve the complete annotation information for that mutation.

Mutation ID Lineage name Mutation frequency Gene ID Gene name Genome position DNA mutation Mutation type Protein mutation-1 letter Protein mutation-3 letter
V2595 BM.4 8.87e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 14408 14144C>T missense_variant P4715L Pro4715Leu
V2694 BM.4 9.84e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15451 15187G>A missense_variant G5063S Gly5063Ser
V2062 BM.4 4.84e-2 GU280_gp01_pp1a ORF1ab_pp1a 10728 10463C>T missense_variant T3488I Thr3488Ile
V42 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 167 -99G>T upstream_gene_variant None None
V2918 BM.4 1.00e+0 GU280_gp01_pp1ab ORF1ab_pp1ab 17410 17146C>T missense_variant R5716C Arg5716Cys
V3015 BM.4 9.84e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18163 17899A>G missense_variant I5967V Ile5967Val
V3091 BM.4 9.84e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 18583 18319G>A missense_variant V6107I Val6107Ile
V1982 BM.4 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 10029 9764C>T missense_variant T3255I Thr3255Ile
V60 BM.4 2.90e-1 GU280_gp01_pp1a ORF1ab_pp1a 193 -73C>T upstream_gene_variant None None
V3228 BM.4 4.84e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 19586 19322C>T missense_variant T6441I Thr6441Ile
V3271 BM.4 3.23e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 19947 19683G>T missense_variant K6561N Lys6561Asn
V3273 BM.4 9.84e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 19955 19691C>T missense_variant T6564I Thr6564Ile
V3405 BM.4 5.65e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 20741 20477A>G missense_variant Q6826R Gln6826Arg
V3534 BM.4 9.52e-1 GU280_gp02 S 21618 56C>T missense_variant T19I Thr19Ile
V3544 BM.4 7.58e-1 GU280_gp02 S 21632 71_79delTACCCCCTG disruptive_inframe_deletion L24_A27delinsS Leu24_Ala27delinsSer
V3547 BM.4 3.23e-2 GU280_gp02 S 21633 71T>C missense_variant L24S Leu24Ser
V3555 BM.4 3.23e-2 GU280_gp02 S 21641 79G>T missense_variant A27S Ala27Ser
V3635 BM.4 5.16e-1 GU280_gp02 S 21987 425G>A missense_variant G142D Gly142Asp
V3652 BM.4 5.48e-1 GU280_gp02 S 22001 439A>G missense_variant K147E Lys147Glu
V3662 BM.4 6.13e-1 GU280_gp02 S 22016 454T>C missense_variant W152R Trp152Arg
V3675 BM.4 6.45e-1 GU280_gp02 S 22033 471C>A missense_variant F157L Phe157Leu
V3724 BM.4 7.10e-1 GU280_gp02 S 22190 628A>G missense_variant I210V Ile210Val
V3735 BM.4 7.58e-1 GU280_gp02 S 22200 638T>G missense_variant V213G Val213Gly
V2163 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 11287 11023_11031delTCTGGTTTT conservative_inframe_deletion S3675_F3677del Ser3675_Phe3677del
V2165 BM.4 6.45e-2 GU280_gp01_pp1a ORF1ab_pp1a 11288 11023T>A missense_variant S3675T Ser3675Thr
V2167 BM.4 9.68e-2 GU280_gp01_pp1a ORF1ab_pp1a 11291 11026G>A missense_variant G3676S Gly3676Ser
V3784 BM.4 7.90e-1 GU280_gp02 S 22331 769G>A missense_variant G257S Gly257Ser
V2169 BM.4 2.90e-1 GU280_gp01_pp1a ORF1ab_pp1a 11296 11031T>G missense_variant F3677L Phe3677Leu
V3818 BM.4 3.23e-1 GU280_gp02 S 22577 1015G>C missense_variant G339R Gly339Arg
V3820 BM.4 3.23e-1 GU280_gp02 S 22578 1016G>A missense_variant G339D Gly339Asp
V3840 BM.4 3.23e-1 GU280_gp02 S 22674 1112C>T missense_variant S371F Ser371Phe
V3841 BM.4 3.23e-1 GU280_gp02 S 22679 1117T>C missense_variant S373P Ser373Pro
V3843 BM.4 3.23e-1 GU280_gp02 S 22686 1124C>T missense_variant S375F Ser375Phe
V3844 BM.4 3.23e-1 GU280_gp02 S 22688 1126A>G missense_variant T376A Thr376Ala
V3851 BM.4 3.39e-1 GU280_gp02 S 22775 1213G>A missense_variant D405N Asp405Asn
V3854 BM.4 3.23e-1 GU280_gp02 S 22786 1224A>C missense_variant R408S Arg408Ser
V3861 BM.4 3.23e-1 GU280_gp02 S 22813 1251G>T missense_variant K417N Lys417Asn
V3868 BM.4 3.87e-1 GU280_gp02 S 22882 1320T>G missense_variant N440K Asn440Lys
V3869 BM.4 6.45e-2 GU280_gp02 S 22893 1331A>C missense_variant K444T Lys444Thr
V3877 BM.4 3.87e-1 GU280_gp02 S 22898 1336G>A missense_variant G446S Gly446Ser
V3886 BM.4 6.45e-2 GU280_gp02 S 22917 1355T>G missense_variant L452R Leu452Arg
V3891 BM.4 3.87e-1 GU280_gp02 S 22942 1380T>G missense_variant N460K Asn460Lys
V3896 BM.4 3.39e-1 GU280_gp02 S 22992 1430G>A missense_variant S477N Ser477Asn
V3900 BM.4 3.55e-1 GU280_gp02 S 22995 1433C>A missense_variant T478K Thr478Lys
V3911 BM.4 3.39e-1 GU280_gp02 S 23013 1451A>C missense_variant E484A Glu484Ala
V3926 BM.4 3.87e-1 GU280_gp02 S 23055 1493A>G missense_variant Q498R Gln498Arg
V3927 BM.4 3.87e-1 GU280_gp02 S 23063 1501A>T missense_variant N501Y Asn501Tyr
V3930 BM.4 3.87e-1 GU280_gp02 S 23075 1513T>C missense_variant Y505H Tyr505His
V3969 BM.4 1.00e+0 GU280_gp02 S 23403 1841A>G missense_variant D614G Asp614Gly
V3997 BM.4 1.00e+0 GU280_gp02 S 23525 1963C>T missense_variant H655Y His655Tyr
V4019 BM.4 1.00e+0 GU280_gp02 S 23599 2037T>G missense_variant N679K Asn679Lys
V4022 BM.4 1.00e+0 GU280_gp02 S 23604 2042C>A missense_variant P681H Pro681His
V4063 BM.4 9.84e-1 GU280_gp02 S 23854 2292C>A missense_variant N764K Asn764Lys
V4079 BM.4 1.00e+0 GU280_gp02 S 23948 2386G>T missense_variant D796Y Asp796Tyr
V97 BM.4 6.29e-1 GU280_gp01_pp1a ORF1ab_pp1a 241 -25C>T upstream_gene_variant None None
V4144 BM.4 9.84e-1 GU280_gp02 S 24424 2862A>T missense_variant Q954H Gln954His
V4146 BM.4 9.84e-1 GU280_gp02 S 24469 2907T>A missense_variant N969K Asn969Lys
V4394 BM.4 3.23e-2 GU280_gp03 ORF3a 25546 154C>A missense_variant L52I Leu52Ile
V4401 BM.4 3.23e-2 GU280_gp03 ORF3a 25555 163G>T missense_variant V55F Val55Phe
V4596 BM.4 9.84e-1 GU280_gp03 ORF3a 26060 668C>T missense_variant T223I Thr223Ile
V4663 BM.4 9.52e-1 GU280_gp04 E 26270 26C>T missense_variant T9I Thr9Ile
V4664 BM.4 9.52e-1 GU280_gp04 E 26275 31A>G missense_variant T11A Thr11Ala
V4729 BM.4 8.06e-1 GU280_gp05 M 26577 55C>G missense_variant Q19E Gln19Glu
V4742 BM.4 9.52e-1 GU280_gp05 M 26709 187G>A missense_variant A63T Ala63Thr
V4837 BM.4 3.23e-2 GU280_gp06 ORF6 27371 170C>T missense_variant P57L Pro57Leu
V4839 BM.4 9.35e-1 GU280_gp06 ORF6 27382 181G>C missense_variant D61H Asp61His
V4841 BM.4 9.35e-1 GU280_gp06 ORF6 27383 182A>T missense_variant D61V Asp61Val
V2294 BM.4 8.06e-2 GU280_gp01_pp1a ORF1ab_pp1a 12153 11888C>T missense_variant A3963V Ala3963Val
V773 BM.4 9.68e-1 GU280_gp01_pp1a ORF1ab_pp1a 2790 2525C>T missense_variant T842I Thr842Ile
V5241 BM.4 9.84e-1 GU280_gp10 N 28271 -3A>T upstream_gene_variant None None
V5274 BM.4 9.84e-1 GU280_gp10 N 28311 38C>T missense_variant P13L Pro13Leu
V5290 BM.4 4.84e-2 GU280_gp10 N 28340 67T>C missense_variant S23P Ser23Pro
V5305 BM.4 8.71e-1 GU280_gp10 N 28361 90_98delAGAACGCAG disruptive_inframe_deletion E31_S33del Glu31_Ser33del
V2326 BM.4 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 12444 12179A>G missense_variant N4060S Asn4060Ser
V5461 BM.4 7.42e-1 GU280_gp10 N 28881 608G>A missense_variant R203K Arg203Lys
V5465 BM.4 7.42e-1 GU280_gp10 N 28883 610G>C missense_variant G204R Gly204Arg
V391 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 1254 989C>T missense_variant S330L Ser330Leu
V5651 BM.4 8.23e-1 GU280_gp10 N 29510 1237A>C missense_variant S413R Ser413Arg
V5684 BM.4 4.84e-2 GU280_gp11 ORF10 29567 10A>G missense_variant I4V Ile4Val
V5758 BM.4 6.45e-2 GU280_gp02 S 29733 *4350_*4375delGAGGCCACGCGGAGTACGATCGAGTG downstream_gene_variant None None
V1040 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 3857 3592C>A missense_variant Q1198K Gln1198Lys
V1066 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 3927 3662C>T missense_variant S1221L Ser1221Leu
V2383 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 12806 12541G>A missense_variant V4181I Val4181Ile
V2388 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 12854 12589C>T missense_variant P4197S Pro4197Ser
V1114 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 4184 3919G>A missense_variant G1307S Gly1307Ser
V1262 BM.4 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 5183 4918C>T missense_variant P1640S Pro1640Ser
V1348 BM.4 1.29e-1 GU280_gp01_pp1a ORF1ab_pp1a 5826 5561C>T missense_variant T1854I Thr1854Ile
V249 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 670 405T>G missense_variant S135R Ser135Arg
V1603 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 7095 6830C>T missense_variant T2277I Thr2277Ile
V17 BM.4 4.84e-2 GU280_gp01_pp1a ORF1ab_pp1a 92 -174C>T upstream_gene_variant None None
V1907 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 9344 9079C>T missense_variant L3027F Leu3027Phe
V1937 BM.4 6.61e-1 GU280_gp01_pp1a ORF1ab_pp1a 9534 9269C>T missense_variant T3090I Thr3090Ile
V1969 BM.4 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 9866 9601C>T missense_variant L3201F Leu3201Phe
V2490 BM.4 3.23e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 13721 13457C>T missense_variant P4486L Pro4486Leu
V2037 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 10449 10184C>A missense_variant P3395H Pro3395His
V6265 BM.4 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 3037 2772C>T synonymous_variant F924F Phe924Phe
V6364 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 3796 3531C>T synonymous_variant V1177V Val1177Val
V6426 BM.4 9.68e-1 GU280_gp01_pp1a ORF1ab_pp1a 4321 4056C>T synonymous_variant A1352A Ala1352Ala
V6463 BM.4 8.39e-1 GU280_gp01_pp1a ORF1ab_pp1a 4586 4321C>T synonymous_variant L1441L Leu1441Leu
V7082 BM.4 8.71e-1 GU280_gp01_pp1a ORF1ab_pp1a 9424 9159A>G synonymous_variant V3053V Val3053Val
V7193 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 10198 9933C>T synonymous_variant D3311D Asp3311Asp
V7219 BM.4 9.84e-1 GU280_gp01_pp1a ORF1ab_pp1a 10447 10182G>A synonymous_variant R3394R Arg3394Arg
V7520 BM.4 1.00e+0 GU280_gp01_pp1a ORF1ab_pp1a 12880 12615C>T synonymous_variant I4205I Ile4205Ile
V7888 BM.4 9.84e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 15714 15450C>T synonymous_variant L5150L Leu5150Leu
V8457 BM.4 9.68e-1 GU280_gp01_pp1ab ORF1ab_pp1ab 20055 19791A>G synonymous_variant E6597E Glu6597Glu
V9076 BM.4 1.00e+0 GU280_gp02 S 25000 3438C>T synonymous_variant D1146D Asp1146Asp
V9139 BM.4 1.00e+0 GU280_gp03 ORF3a 25416 24C>T synonymous_variant F8F Phe8Phe
V9171 BM.4 9.35e-1 GU280_gp03 ORF3a 25584 192C>T synonymous_variant T64T Thr64Thr
V9334 BM.4 1.00e+0 GU280_gp05 M 26858 336C>T synonymous_variant F112F Phe112Phe
V9401 BM.4 9.84e-1 GU280_gp06 ORF6 27259 58A>C synonymous_variant R20R Arg20Arg
V9418 BM.4 9.35e-1 GU280_gp06 ORF6 27384 183T>C synonymous_variant D61D Asp61Asp
V9496 BM.4 8.87e-1 GU280_gp08 ORF7b 27807 52C>T synonymous_variant L18L Leu18Leu
V9682 BM.4 7.42e-1 GU280_gp10 N 28882 609G>A synonymous_variant R203R Arg203Arg
V9452 BM.4 9.68e-2 GU280_gp07 ORF7a 27576 183T>C synonymous_variant T61T Thr61Thr
V7391 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 11902 11637C>T synonymous_variant L3879L Leu3879Leu
V8662 BM.4 1.77e-1 GU280_gp02 S 21811 249C>T synonymous_variant V83V Val83Val
V9576 BM.4 1.13e-1 GU280_gp10 N 28363 90A>T synonymous_variant G30G Gly30Gly
V6067 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 1729 1464G>A synonymous_variant V488V Val488Val
V6227 BM.4 4.84e-2 GU280_gp01_pp1a ORF1ab_pp1a 2773 2508C>T synonymous_variant Y836Y Tyr836Tyr
V6670 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 6154 5889A>G synonymous_variant L1963L Leu1963Leu
V7749 BM.4 3.23e-2 GU280_gp01_pp1ab ORF1ab_pp1ab 14619 14355T>C synonymous_variant T4785T Thr4785Thr
V5847 BM.4 8.06e-2 GU280_gp01_pp1a ORF1ab_pp1a 346 81C>T synonymous_variant L27L Leu27Leu
V6501 BM.4 8.06e-2 GU280_gp01_pp1a ORF1ab_pp1a 4897 4632C>T synonymous_variant F1544F Phe1544Phe
V9391 BM.4 3.23e-2 GU280_gp05 M 27143 621C>T synonymous_variant N207N Asn207Asn
V6780 BM.4 1.29e-1 GU280_gp01_pp1a ORF1ab_pp1a 6983 6718C>T synonymous_variant L2240L Leu2240Leu
V7369 BM.4 1.29e-1 GU280_gp01_pp1a ORF1ab_pp1a 11752 11487C>T synonymous_variant L3829L Leu3829Leu
V8761 BM.4 3.23e-2 GU280_gp02 S 22591 1029C>T synonymous_variant N343N Asn343Asn
V9434 BM.4 3.23e-2 GU280_gp07 ORF7a 27504 111T>C synonymous_variant S37S Ser37Ser
V6303 BM.4 3.23e-2 GU280_gp01_pp1a ORF1ab_pp1a 3358 3093T>C synonymous_variant Y1031Y Tyr1031Tyr